data_2F2J # _entry.id 2F2J # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2F2J pdb_00002f2j 10.2210/pdb2f2j/pdb RCSB RCSB035372 ? ? WWPDB D_1000035372 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-01-31 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-11-10 5 'Structure model' 1 4 2024-10-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif 7 5 'Structure model' chem_comp_atom 8 5 'Structure model' chem_comp_bond 9 5 'Structure model' pdbx_entry_details 10 5 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2F2J _pdbx_database_status.recvd_initial_deposition_date 2005-11-17 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2F2I _pdbx_database_related.details 'the same protein(P20D,V21K)' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Clark, R.J.' 1 'Daly, N.L.' 2 'Craik, D.J.' 3 # _citation.id primary _citation.title 'Structural plasticity of the cyclic cystine knot framework: implications for biological activity and drug design' _citation.journal_abbrev Biochem.J. _citation.journal_volume 394 _citation.page_first 85 _citation.page_last 93 _citation.year 2006 _citation.journal_id_ASTM BIJOAK _citation.country UK _citation.journal_id_ISSN 0264-6021 _citation.journal_id_CSD 0043 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16300479 _citation.pdbx_database_id_DOI 10.1042/BJ20051691 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Clark, R.J.' 1 ? primary 'Daly, N.L.' 2 ? primary 'Craik, D.J.' 3 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description Kalata-B1 _entity.formula_weight 2907.352 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation W19K/P20N/V21K/S29V _entity.pdbx_fragment 'residues 1-29' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code CGETCVGGTCNTPGCTCSKNKCTRNGLPV _entity_poly.pdbx_seq_one_letter_code_can CGETCVGGTCNTPGCTCSKNKCTRNGLPV _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 CYS n 1 2 GLY n 1 3 GLU n 1 4 THR n 1 5 CYS n 1 6 VAL n 1 7 GLY n 1 8 GLY n 1 9 THR n 1 10 CYS n 1 11 ASN n 1 12 THR n 1 13 PRO n 1 14 GLY n 1 15 CYS n 1 16 THR n 1 17 CYS n 1 18 SER n 1 19 LYS n 1 20 ASN n 1 21 LYS n 1 22 CYS n 1 23 THR n 1 24 ARG n 1 25 ASN n 1 26 GLY n 1 27 LEU n 1 28 PRO n 1 29 VAL n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'The peptide was chemically synthesized. The sequence of the peptide is naturally found in Oldenlandia affinis.' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 CYS 1 1 1 CYS CYS A . n A 1 2 GLY 2 2 2 GLY GLY A . n A 1 3 GLU 3 3 3 GLU GLU A . n A 1 4 THR 4 4 4 THR THR A . n A 1 5 CYS 5 5 5 CYS CYS A . n A 1 6 VAL 6 6 6 VAL VAL A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 THR 9 9 9 THR THR A . n A 1 10 CYS 10 10 10 CYS CYS A . n A 1 11 ASN 11 11 11 ASN ASN A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 PRO 13 13 13 PRO PRO A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 CYS 15 15 15 CYS CYS A . n A 1 16 THR 16 16 16 THR THR A . n A 1 17 CYS 17 17 17 CYS CYS A . n A 1 18 SER 18 18 18 SER SER A . n A 1 19 LYS 19 19 19 LYS LYS A . n A 1 20 ASN 20 20 20 ASN ASN A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 CYS 22 22 22 CYS CYS A . n A 1 23 THR 23 23 23 THR THR A . n A 1 24 ARG 24 24 24 ARG ARG A . n A 1 25 ASN 25 25 25 ASN ASN A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 PRO 28 28 28 PRO PRO A . n A 1 29 VAL 29 29 29 VAL VAL A . n # _exptl.entry_id 2F2J _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _database_PDB_matrix.entry_id 2F2J _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2F2J _struct.title 'Solution structure of [W19K, P20N, V21K]-kalata B1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2F2J _struct_keywords.pdbx_keywords 'ANTIMICROBIAL PROTEIN' _struct_keywords.text 'cystine knot, circular backbone, beta-hairpin, ANTIMICROBIAL PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code KAB1_OLDAF _struct_ref.pdbx_db_accession P56254 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code CGETCVGGTCNTPGCTCSWPVCTRNGLPS _struct_ref.pdbx_align_begin 93 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2F2J _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 29 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P56254 _struct_ref_seq.db_align_beg 93 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 121 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 29 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2F2J LYS A 19 ? UNP P56254 TRP 111 'engineered mutation' 19 1 1 2F2J ASN A 20 ? UNP P56254 PRO 112 'engineered mutation' 20 2 1 2F2J LYS A 21 ? UNP P56254 VAL 113 'engineered mutation' 21 3 1 2F2J VAL A 29 ? UNP P56254 SER 121 'engineered mutation' 29 4 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 1 SG ? ? ? 1_555 A CYS 15 SG ? ? A CYS 1 A CYS 15 1_555 ? ? ? ? ? ? ? 2.028 ? ? disulf2 disulf ? ? A CYS 5 SG ? ? ? 1_555 A CYS 17 SG ? ? A CYS 5 A CYS 17 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf3 disulf ? ? A CYS 10 SG ? ? ? 1_555 A CYS 22 SG ? ? A CYS 10 A CYS 22 1_555 ? ? ? ? ? ? ? 2.021 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CYS A 1 ? CYS A 15 ? CYS A 1 ? 1_555 CYS A 15 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 CYS A 5 ? CYS A 17 ? CYS A 5 ? 1_555 CYS A 17 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS A 10 ? CYS A 22 ? CYS A 10 ? 1_555 CYS A 22 ? 1_555 SG SG . . . None 'Disulfide bridge' # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 CYS A 15 ? SER A 18 ? CYS A 15 SER A 18 A 2 LYS A 21 ? ARG A 24 ? LYS A 21 ARG A 24 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id THR _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 16 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id THR _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 16 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id THR _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 23 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id THR _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 23 # _pdbx_entry_details.entry_id 2F2J _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 N A CYS 1 ? ? C A VAL 29 ? ? 1.33 2 2 N A CYS 1 ? ? C A VAL 29 ? ? 1.33 3 3 N A CYS 1 ? ? C A VAL 29 ? ? 1.32 4 4 N A CYS 1 ? ? C A VAL 29 ? ? 1.33 5 5 N A CYS 1 ? ? C A VAL 29 ? ? 1.33 6 6 N A CYS 1 ? ? C A VAL 29 ? ? 1.33 7 7 N A CYS 1 ? ? C A VAL 29 ? ? 1.33 8 8 N A CYS 1 ? ? C A VAL 29 ? ? 1.33 9 9 N A CYS 1 ? ? C A VAL 29 ? ? 1.32 10 10 N A CYS 1 ? ? C A VAL 29 ? ? 1.33 11 11 N A CYS 1 ? ? C A VAL 29 ? ? 1.33 12 12 N A CYS 1 ? ? C A VAL 29 ? ? 1.33 13 13 N A CYS 1 ? ? C A VAL 29 ? ? 1.33 14 14 N A CYS 1 ? ? C A VAL 29 ? ? 1.32 15 15 N A CYS 1 ? ? C A VAL 29 ? ? 1.33 16 16 N A CYS 1 ? ? C A VAL 29 ? ? 1.33 17 17 N A CYS 1 ? ? C A VAL 29 ? ? 1.33 18 18 N A CYS 1 ? ? C A VAL 29 ? ? 1.33 19 19 N A CYS 1 ? ? C A VAL 29 ? ? 1.33 20 20 N A CYS 1 ? ? C A VAL 29 ? ? 1.32 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 19 ? ? -46.74 83.18 2 1 ASN A 20 ? ? 58.76 18.94 3 2 SER A 18 ? ? -120.96 -168.80 4 2 LYS A 19 ? ? -47.59 83.46 5 3 GLU A 3 ? ? -57.88 173.88 6 3 LYS A 19 ? ? -46.57 83.71 7 3 ASN A 20 ? ? 56.90 19.69 8 4 SER A 18 ? ? -127.15 -167.08 9 4 LYS A 19 ? ? -49.10 81.87 10 5 GLU A 3 ? ? -59.82 172.46 11 5 LYS A 19 ? ? -46.77 81.92 12 5 ASN A 20 ? ? 58.13 18.07 13 6 LYS A 19 ? ? -49.79 95.03 14 7 LYS A 19 ? ? -46.73 84.90 15 7 ASN A 20 ? ? 49.59 23.26 16 8 LYS A 19 ? ? -47.50 86.00 17 9 LYS A 19 ? ? -45.80 80.58 18 10 SER A 18 ? ? -125.89 -166.73 19 10 LYS A 19 ? ? -45.49 82.21 20 11 LYS A 19 ? ? -46.83 89.36 21 11 ASN A 20 ? ? 48.50 24.22 22 12 LYS A 19 ? ? -48.87 91.91 23 13 LYS A 19 ? ? -48.31 88.71 24 14 LYS A 19 ? ? -47.90 94.00 25 15 GLU A 3 ? ? -57.90 172.51 26 15 LYS A 19 ? ? -48.16 86.13 27 16 LYS A 19 ? ? -46.40 80.38 28 17 LYS A 19 ? ? -47.48 86.31 29 17 ASN A 20 ? ? 56.78 15.78 30 18 LYS A 19 ? ? -47.39 83.29 31 19 GLU A 3 ? ? -58.64 172.02 32 19 LYS A 19 ? ? -48.49 85.51 33 20 LYS A 19 ? ? -49.47 85.28 # _pdbx_nmr_ensemble.entry_id 2F2J _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2F2J _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1mM [W19K, P20N, V21K]-kalata B1, 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 290 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 4 _pdbx_nmr_exptl_sample_conditions.ionic_strength 1 _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 '2D NOESY' 1 2 1 '2D TOCSY' 1 3 1 DQF-COSY 1 4 1 E-COSY 1 # _pdbx_nmr_refine.entry_id 2F2J _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 'data analysis' XEASY 1.3.7 'Eccles et al' 2 'structure solution' DYANA 1.5 'Guntert et al' 3 'structure solution' CNS 1.1 'Brunger et al' 4 refinement CNS 1.1 'Brunger et al' 5 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ARG N N N N 1 ARG CA C N S 2 ARG C C N N 3 ARG O O N N 4 ARG CB C N N 5 ARG CG C N N 6 ARG CD C N N 7 ARG NE N N N 8 ARG CZ C N N 9 ARG NH1 N N N 10 ARG NH2 N N N 11 ARG OXT O N N 12 ARG H H N N 13 ARG H2 H N N 14 ARG HA H N N 15 ARG HB2 H N N 16 ARG HB3 H N N 17 ARG HG2 H N N 18 ARG HG3 H N N 19 ARG HD2 H N N 20 ARG HD3 H N N 21 ARG HE H N N 22 ARG HH11 H N N 23 ARG HH12 H N N 24 ARG HH21 H N N 25 ARG HH22 H N N 26 ARG HXT H N N 27 ASN N N N N 28 ASN CA C N S 29 ASN C C N N 30 ASN O O N N 31 ASN CB C N N 32 ASN CG C N N 33 ASN OD1 O N N 34 ASN ND2 N N N 35 ASN OXT O N N 36 ASN H H N N 37 ASN H2 H N N 38 ASN HA H N N 39 ASN HB2 H N N 40 ASN HB3 H N N 41 ASN HD21 H N N 42 ASN HD22 H N N 43 ASN HXT H N N 44 CYS N N N N 45 CYS CA C N R 46 CYS C C N N 47 CYS O O N N 48 CYS CB C N N 49 CYS SG S N N 50 CYS OXT O N N 51 CYS H H N N 52 CYS H2 H N N 53 CYS HA H N N 54 CYS HB2 H N N 55 CYS HB3 H N N 56 CYS HG H N N 57 CYS HXT H N N 58 GLU N N N N 59 GLU CA C N S 60 GLU C C N N 61 GLU O O N N 62 GLU CB C N N 63 GLU CG C N N 64 GLU CD C N N 65 GLU OE1 O N N 66 GLU OE2 O N N 67 GLU OXT O N N 68 GLU H H N N 69 GLU H2 H N N 70 GLU HA H N N 71 GLU HB2 H N N 72 GLU HB3 H N N 73 GLU HG2 H N N 74 GLU HG3 H N N 75 GLU HE2 H N N 76 GLU HXT H N N 77 GLY N N N N 78 GLY CA C N N 79 GLY C C N N 80 GLY O O N N 81 GLY OXT O N N 82 GLY H H N N 83 GLY H2 H N N 84 GLY HA2 H N N 85 GLY HA3 H N N 86 GLY HXT H N N 87 LEU N N N N 88 LEU CA C N S 89 LEU C C N N 90 LEU O O N N 91 LEU CB C N N 92 LEU CG C N N 93 LEU CD1 C N N 94 LEU CD2 C N N 95 LEU OXT O N N 96 LEU H H N N 97 LEU H2 H N N 98 LEU HA H N N 99 LEU HB2 H N N 100 LEU HB3 H N N 101 LEU HG H N N 102 LEU HD11 H N N 103 LEU HD12 H N N 104 LEU HD13 H N N 105 LEU HD21 H N N 106 LEU HD22 H N N 107 LEU HD23 H N N 108 LEU HXT H N N 109 LYS N N N N 110 LYS CA C N S 111 LYS C C N N 112 LYS O O N N 113 LYS CB C N N 114 LYS CG C N N 115 LYS CD C N N 116 LYS CE C N N 117 LYS NZ N N N 118 LYS OXT O N N 119 LYS H H N N 120 LYS H2 H N N 121 LYS HA H N N 122 LYS HB2 H N N 123 LYS HB3 H N N 124 LYS HG2 H N N 125 LYS HG3 H N N 126 LYS HD2 H N N 127 LYS HD3 H N N 128 LYS HE2 H N N 129 LYS HE3 H N N 130 LYS HZ1 H N N 131 LYS HZ2 H N N 132 LYS HZ3 H N N 133 LYS HXT H N N 134 PRO N N N N 135 PRO CA C N S 136 PRO C C N N 137 PRO O O N N 138 PRO CB C N N 139 PRO CG C N N 140 PRO CD C N N 141 PRO OXT O N N 142 PRO H H N N 143 PRO HA H N N 144 PRO HB2 H N N 145 PRO HB3 H N N 146 PRO HG2 H N N 147 PRO HG3 H N N 148 PRO HD2 H N N 149 PRO HD3 H N N 150 PRO HXT H N N 151 SER N N N N 152 SER CA C N S 153 SER C C N N 154 SER O O N N 155 SER CB C N N 156 SER OG O N N 157 SER OXT O N N 158 SER H H N N 159 SER H2 H N N 160 SER HA H N N 161 SER HB2 H N N 162 SER HB3 H N N 163 SER HG H N N 164 SER HXT H N N 165 THR N N N N 166 THR CA C N S 167 THR C C N N 168 THR O O N N 169 THR CB C N R 170 THR OG1 O N N 171 THR CG2 C N N 172 THR OXT O N N 173 THR H H N N 174 THR H2 H N N 175 THR HA H N N 176 THR HB H N N 177 THR HG1 H N N 178 THR HG21 H N N 179 THR HG22 H N N 180 THR HG23 H N N 181 THR HXT H N N 182 TRP N N N N 183 TRP CA C N S 184 TRP C C N N 185 TRP O O N N 186 TRP CB C N N 187 TRP CG C Y N 188 TRP CD1 C Y N 189 TRP CD2 C Y N 190 TRP NE1 N Y N 191 TRP CE2 C Y N 192 TRP CE3 C Y N 193 TRP CZ2 C Y N 194 TRP CZ3 C Y N 195 TRP CH2 C Y N 196 TRP OXT O N N 197 TRP H H N N 198 TRP H2 H N N 199 TRP HA H N N 200 TRP HB2 H N N 201 TRP HB3 H N N 202 TRP HD1 H N N 203 TRP HE1 H N N 204 TRP HE3 H N N 205 TRP HZ2 H N N 206 TRP HZ3 H N N 207 TRP HH2 H N N 208 TRP HXT H N N 209 VAL N N N N 210 VAL CA C N S 211 VAL C C N N 212 VAL O O N N 213 VAL CB C N N 214 VAL CG1 C N N 215 VAL CG2 C N N 216 VAL OXT O N N 217 VAL H H N N 218 VAL H2 H N N 219 VAL HA H N N 220 VAL HB H N N 221 VAL HG11 H N N 222 VAL HG12 H N N 223 VAL HG13 H N N 224 VAL HG21 H N N 225 VAL HG22 H N N 226 VAL HG23 H N N 227 VAL HXT H N N 228 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG N CA sing N N 1 ARG N H sing N N 2 ARG N H2 sing N N 3 ARG CA C sing N N 4 ARG CA CB sing N N 5 ARG CA HA sing N N 6 ARG C O doub N N 7 ARG C OXT sing N N 8 ARG CB CG sing N N 9 ARG CB HB2 sing N N 10 ARG CB HB3 sing N N 11 ARG CG CD sing N N 12 ARG CG HG2 sing N N 13 ARG CG HG3 sing N N 14 ARG CD NE sing N N 15 ARG CD HD2 sing N N 16 ARG CD HD3 sing N N 17 ARG NE CZ sing N N 18 ARG NE HE sing N N 19 ARG CZ NH1 sing N N 20 ARG CZ NH2 doub N N 21 ARG NH1 HH11 sing N N 22 ARG NH1 HH12 sing N N 23 ARG NH2 HH21 sing N N 24 ARG NH2 HH22 sing N N 25 ARG OXT HXT sing N N 26 ASN N CA sing N N 27 ASN N H sing N N 28 ASN N H2 sing N N 29 ASN CA C sing N N 30 ASN CA CB sing N N 31 ASN CA HA sing N N 32 ASN C O doub N N 33 ASN C OXT sing N N 34 ASN CB CG sing N N 35 ASN CB HB2 sing N N 36 ASN CB HB3 sing N N 37 ASN CG OD1 doub N N 38 ASN CG ND2 sing N N 39 ASN ND2 HD21 sing N N 40 ASN ND2 HD22 sing N N 41 ASN OXT HXT sing N N 42 CYS N CA sing N N 43 CYS N H sing N N 44 CYS N H2 sing N N 45 CYS CA C sing N N 46 CYS CA CB sing N N 47 CYS CA HA sing N N 48 CYS C O doub N N 49 CYS C OXT sing N N 50 CYS CB SG sing N N 51 CYS CB HB2 sing N N 52 CYS CB HB3 sing N N 53 CYS SG HG sing N N 54 CYS OXT HXT sing N N 55 GLU N CA sing N N 56 GLU N H sing N N 57 GLU N H2 sing N N 58 GLU CA C sing N N 59 GLU CA CB sing N N 60 GLU CA HA sing N N 61 GLU C O doub N N 62 GLU C OXT sing N N 63 GLU CB CG sing N N 64 GLU CB HB2 sing N N 65 GLU CB HB3 sing N N 66 GLU CG CD sing N N 67 GLU CG HG2 sing N N 68 GLU CG HG3 sing N N 69 GLU CD OE1 doub N N 70 GLU CD OE2 sing N N 71 GLU OE2 HE2 sing N N 72 GLU OXT HXT sing N N 73 GLY N CA sing N N 74 GLY N H sing N N 75 GLY N H2 sing N N 76 GLY CA C sing N N 77 GLY CA HA2 sing N N 78 GLY CA HA3 sing N N 79 GLY C O doub N N 80 GLY C OXT sing N N 81 GLY OXT HXT sing N N 82 LEU N CA sing N N 83 LEU N H sing N N 84 LEU N H2 sing N N 85 LEU CA C sing N N 86 LEU CA CB sing N N 87 LEU CA HA sing N N 88 LEU C O doub N N 89 LEU C OXT sing N N 90 LEU CB CG sing N N 91 LEU CB HB2 sing N N 92 LEU CB HB3 sing N N 93 LEU CG CD1 sing N N 94 LEU CG CD2 sing N N 95 LEU CG HG sing N N 96 LEU CD1 HD11 sing N N 97 LEU CD1 HD12 sing N N 98 LEU CD1 HD13 sing N N 99 LEU CD2 HD21 sing N N 100 LEU CD2 HD22 sing N N 101 LEU CD2 HD23 sing N N 102 LEU OXT HXT sing N N 103 LYS N CA sing N N 104 LYS N H sing N N 105 LYS N H2 sing N N 106 LYS CA C sing N N 107 LYS CA CB sing N N 108 LYS CA HA sing N N 109 LYS C O doub N N 110 LYS C OXT sing N N 111 LYS CB CG sing N N 112 LYS CB HB2 sing N N 113 LYS CB HB3 sing N N 114 LYS CG CD sing N N 115 LYS CG HG2 sing N N 116 LYS CG HG3 sing N N 117 LYS CD CE sing N N 118 LYS CD HD2 sing N N 119 LYS CD HD3 sing N N 120 LYS CE NZ sing N N 121 LYS CE HE2 sing N N 122 LYS CE HE3 sing N N 123 LYS NZ HZ1 sing N N 124 LYS NZ HZ2 sing N N 125 LYS NZ HZ3 sing N N 126 LYS OXT HXT sing N N 127 PRO N CA sing N N 128 PRO N CD sing N N 129 PRO N H sing N N 130 PRO CA C sing N N 131 PRO CA CB sing N N 132 PRO CA HA sing N N 133 PRO C O doub N N 134 PRO C OXT sing N N 135 PRO CB CG sing N N 136 PRO CB HB2 sing N N 137 PRO CB HB3 sing N N 138 PRO CG CD sing N N 139 PRO CG HG2 sing N N 140 PRO CG HG3 sing N N 141 PRO CD HD2 sing N N 142 PRO CD HD3 sing N N 143 PRO OXT HXT sing N N 144 SER N CA sing N N 145 SER N H sing N N 146 SER N H2 sing N N 147 SER CA C sing N N 148 SER CA CB sing N N 149 SER CA HA sing N N 150 SER C O doub N N 151 SER C OXT sing N N 152 SER CB OG sing N N 153 SER CB HB2 sing N N 154 SER CB HB3 sing N N 155 SER OG HG sing N N 156 SER OXT HXT sing N N 157 THR N CA sing N N 158 THR N H sing N N 159 THR N H2 sing N N 160 THR CA C sing N N 161 THR CA CB sing N N 162 THR CA HA sing N N 163 THR C O doub N N 164 THR C OXT sing N N 165 THR CB OG1 sing N N 166 THR CB CG2 sing N N 167 THR CB HB sing N N 168 THR OG1 HG1 sing N N 169 THR CG2 HG21 sing N N 170 THR CG2 HG22 sing N N 171 THR CG2 HG23 sing N N 172 THR OXT HXT sing N N 173 TRP N CA sing N N 174 TRP N H sing N N 175 TRP N H2 sing N N 176 TRP CA C sing N N 177 TRP CA CB sing N N 178 TRP CA HA sing N N 179 TRP C O doub N N 180 TRP C OXT sing N N 181 TRP CB CG sing N N 182 TRP CB HB2 sing N N 183 TRP CB HB3 sing N N 184 TRP CG CD1 doub Y N 185 TRP CG CD2 sing Y N 186 TRP CD1 NE1 sing Y N 187 TRP CD1 HD1 sing N N 188 TRP CD2 CE2 doub Y N 189 TRP CD2 CE3 sing Y N 190 TRP NE1 CE2 sing Y N 191 TRP NE1 HE1 sing N N 192 TRP CE2 CZ2 sing Y N 193 TRP CE3 CZ3 doub Y N 194 TRP CE3 HE3 sing N N 195 TRP CZ2 CH2 doub Y N 196 TRP CZ2 HZ2 sing N N 197 TRP CZ3 CH2 sing Y N 198 TRP CZ3 HZ3 sing N N 199 TRP CH2 HH2 sing N N 200 TRP OXT HXT sing N N 201 VAL N CA sing N N 202 VAL N H sing N N 203 VAL N H2 sing N N 204 VAL CA C sing N N 205 VAL CA CB sing N N 206 VAL CA HA sing N N 207 VAL C O doub N N 208 VAL C OXT sing N N 209 VAL CB CG1 sing N N 210 VAL CB CG2 sing N N 211 VAL CB HB sing N N 212 VAL CG1 HG11 sing N N 213 VAL CG1 HG12 sing N N 214 VAL CG1 HG13 sing N N 215 VAL CG2 HG21 sing N N 216 VAL CG2 HG22 sing N N 217 VAL CG2 HG23 sing N N 218 VAL OXT HXT sing N N 219 # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 AVANCE Bruker 500 ? 2 DMX Bruker 750 ? # _atom_sites.entry_id 2F2J _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_