HEADER HYDROLASE 22-NOV-05 2F46 TITLE CRYSTAL STRUCTURE OF A PUTATIVE PHOSPHATASE (NMA1982) FROM NEISSERIA TITLE 2 MENINGITIDIS Z2491 AT 1.41 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS Z2491; SOURCE 3 ORGANISM_TAXID: 122587; SOURCE 4 STRAIN: FAM18; SOURCE 5 GENE: 7380613; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: HK100:SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 25-JAN-23 2F46 1 REMARK SEQADV LINK REVDAT 5 23-MAR-11 2F46 1 HEADER TITLE KEYWDS REVDAT 4 24-FEB-09 2F46 1 VERSN REVDAT 3 04-NOV-08 2F46 1 JRNL REVDAT 2 21-FEB-06 2F46 1 JRNL SOURCE TITLE REVDAT 1 07-FEB-06 2F46 0 JRNL AUTH S.S.KRISHNA,L.TAUTZ,Q.XU,D.MCMULLAN,M.D.MILLER,P.ABDUBEK, JRNL AUTH 2 E.AMBING,T.ASTAKHOVA,H.L.AXELROD,D.CARLTON,H.J.CHIU, JRNL AUTH 3 T.CLAYTON,M.DIDONATO,L.DUAN,M.A.ELSLIGER,S.K.GRZECHNIK, JRNL AUTH 4 J.HALE,E.HAMPTON,G.W.HAN,J.HAUGEN,L.JAROSZEWSKI,K.K.JIN, JRNL AUTH 5 H.E.KLOCK,M.W.KNUTH,E.KOESEMA,A.T.MORSE,T.MUSTELIN, JRNL AUTH 6 E.NIGOGHOSSIAN,S.OOMMACHEN,R.REYES,C.L.RIFE,H.VAN DEN BEDEM, JRNL AUTH 7 D.WEEKES,A.WHITE,K.O.HODGSON,J.WOOLEY,A.M.DEACON,A.GODZIK, JRNL AUTH 8 S.A.LESLEY,I.A.WILSON JRNL TITL CRYSTAL STRUCTURE OF NMA1982 FROM NEISSERIA MENINGITIDIS AT JRNL TITL 2 1.5 A RESOLUTION PROVIDES A STRUCTURAL SCAFFOLD FOR JRNL TITL 3 NONCLASSICAL, EUKARYOTIC-LIKE PHOSPHATASES. JRNL REF PROTEINS V. 69 415 2007 JRNL REFN ISSN 0887-3585 JRNL PMID 17636569 JRNL DOI 10.1002/PROT.21314 REMARK 2 REMARK 2 RESOLUTION. 1.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 83.4 REMARK 3 NUMBER OF REFLECTIONS : 43885 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2352 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.41 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.45 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1247 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 32.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2239 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 409 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.29000 REMARK 3 B22 (A**2) : 0.32000 REMARK 3 B33 (A**2) : -0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.39000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.090 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.089 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.719 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2515 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2293 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3433 ; 1.452 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5311 ; 0.837 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 330 ; 6.128 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 133 ;36.039 ;23.383 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 440 ;12.054 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;12.222 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 366 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2957 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 550 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 576 ; 0.262 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2541 ; 0.195 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1301 ; 0.178 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1476 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 302 ; 0.175 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 25 ; 0.290 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 90 ; 0.307 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 34 ; 0.182 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1584 ; 1.959 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 618 ; 0.502 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2512 ; 2.903 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1028 ; 4.587 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 915 ; 6.447 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 15 A 153 6 REMARK 3 1 B 15 B 153 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 2124 ; 0.270 ; 5.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 2124 ; 1.250 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 2. THERE EXISTS A PSEUDO-TRANSLATION BETWEEN THE TWO REMARK 3 MONOMERS IN THE ASU. AS A RESULT, THE L=2N+1 REMARK 3 REFLECTIONS ARE SYSTEMATICALLY WEAK. THIS RESULTS IN REMARK 3 HIGH R-FACTOR FOR L=2N+1 REFLECTIONS. THE OVERALL REMARK 3 R-FACTORS IS RELATIVELY HIGH DUE TO THIS REASON. REMARK 3 THE MAPS LOOK VERY GOOD. REMARK 3 3. AN UNKNOWN DENSITY NEAR B88 WAS MODELED AS UNL, REMARK 3 UNKNOWN LIGAND. REMARK 3 4. DATA AT HIGHEST RESOLUTION SHELLS ARE INCOMPLETE. REMARK 4 REMARK 4 2F46 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-NOV-05. REMARK 100 THE DEPOSITION ID IS D_1000035430. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.019951, 0.979741 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : COLLIMATING MIRROR, DCM, REMARK 200 TOROIDAL FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46247 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.410 REMARK 200 RESOLUTION RANGE LOW (A) : 18.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 83.4 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : 0.04100 REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.41 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 32.3 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : 0.27600 REMARK 200 R SYM FOR SHELL (I) : 0.27600 REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL2, 30.0% PEG-4000, 0.1M TRIS, REMARK 280 PH 8.5, VAPOR DIFFUSION,SITTING DROP,NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 72.13900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 16.73300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 72.13900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 16.73300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 PRO A 2 REMARK 465 SER A 3 REMARK 465 GLU A 4 REMARK 465 LYS A 5 REMARK 465 GLN A 6 REMARK 465 PRO A 7 REMARK 465 GLN A 8 REMARK 465 SER A 9 REMARK 465 LYS A 10 REMARK 465 GLY A 11 REMARK 465 ASN A 12 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 PRO B 2 REMARK 465 SER B 3 REMARK 465 GLU B 4 REMARK 465 LYS B 5 REMARK 465 GLN B 6 REMARK 465 PRO B 7 REMARK 465 GLN B 8 REMARK 465 SER B 9 REMARK 465 LYS B 10 REMARK 465 GLY B 11 REMARK 465 ASN B 12 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 13 N CB CG CD CE NZ REMARK 470 GLU A 35 CD OE1 OE2 REMARK 470 GLU A 55 CG CD OE1 OE2 REMARK 470 ASP A 84 CG OD1 OD2 REMARK 470 LYS A 87 CG CD CE NZ REMARK 470 GLN A 99 CD OE1 NE2 REMARK 470 ARG A 154 CD NE CZ NH1 NH2 REMARK 470 VAL A 155 CA C O CB CG1 CG2 REMARK 470 LYS B 13 N CG CD CE NZ REMARK 470 LYS B 18 CE NZ REMARK 470 GLU B 55 CG CD OE1 OE2 REMARK 470 ASP B 84 CG OD1 OD2 REMARK 470 LYS B 87 NZ REMARK 470 GLN B 99 CD OE1 NE2 REMARK 470 ARG B 154 CD NE CZ NH1 NH2 REMARK 470 VAL B 155 CA C O CB CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 27 -178.42 -68.92 REMARK 500 CYS A 108 -147.41 -139.34 REMARK 500 ARG B 52 30.06 73.52 REMARK 500 CYS B 108 -151.74 -143.19 REMARK 500 CYS B 108 -151.89 -143.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 156 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 156 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL B 157 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 359389 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV REMARK 999 PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE REMARK 999 TARGET SEQUENCE. REMARK 999 THE STRAIN CLONED DIFFERS FROM THE SEQUENCED STRAIN REMARK 999 IN THE DATABASE. THE ELECTRON DENSITY CLEARLY REMARK 999 INDICATED THAT VALINE AT 45 SHOULD BE ISOLEUCINE AND REMARK 999 SERINE AT 102 SHOULD BE TYROSINE, I.E., V45I AND S102Y. REMARK 999 THE DNA SEQUENCE OF THE CLONED CONSTRUCT CONFIRMS THIS REMARK 999 OBSERVATION. DBREF 2F46 A 1 155 GB 7380613 CAB85202 1 155 DBREF 2F46 B 1 155 GB 7380613 CAB85202 1 155 SEQADV 2F46 GLY A 0 GB 7380613 EXPRESSION TAG SEQADV 2F46 MSE A 1 GB 7380613 MET 1 MODIFIED RESIDUE SEQADV 2F46 MSE A 14 GB 7380613 MET 14 MODIFIED RESIDUE SEQADV 2F46 ILE A 45 GB 7380613 VAL 45 SEE REMARK 999 SEQADV 2F46 TYR A 102 GB 7380613 SER 102 SEE REMARK 999 SEQADV 2F46 MSE A 127 GB 7380613 MET 127 MODIFIED RESIDUE SEQADV 2F46 GLY B 0 GB 7380613 EXPRESSION TAG SEQADV 2F46 MSE B 1 GB 7380613 MET 1 MODIFIED RESIDUE SEQADV 2F46 MSE B 14 GB 7380613 MET 14 MODIFIED RESIDUE SEQADV 2F46 ILE B 45 GB 7380613 VAL 45 SEE REMARK 999 SEQADV 2F46 TYR B 102 GB 7380613 SER 102 SEE REMARK 999 SEQADV 2F46 MSE B 127 GB 7380613 MET 127 MODIFIED RESIDUE SEQRES 1 A 156 GLY MSE PRO SER GLU LYS GLN PRO GLN SER LYS GLY ASN SEQRES 2 A 156 LYS MSE ALA ILE LEU LYS LEU ASP GLU HIS LEU TYR ILE SEQRES 3 A 156 SER PRO GLN LEU THR LYS ALA ASP ALA GLU GLN ILE ALA SEQRES 4 A 156 GLN LEU GLY ILE LYS THR ILE ILE CYS ASN ARG PRO ASP SEQRES 5 A 156 ARG GLU GLU GLU SER GLN PRO ASP PHE ALA GLN ILE LYS SEQRES 6 A 156 GLN TRP LEU GLU GLN ALA GLY VAL THR GLY PHE HIS HIS SEQRES 7 A 156 GLN PRO VAL THR ALA ARG ASP ILE GLN LYS HIS ASP VAL SEQRES 8 A 156 GLU THR PHE ARG GLN LEU ILE GLY GLN ALA GLU TYR PRO SEQRES 9 A 156 VAL LEU ALA TYR CYS ARG THR GLY THR ARG CYS SER LEU SEQRES 10 A 156 LEU TRP GLY PHE ARG ARG ALA ALA GLU GLY MSE PRO VAL SEQRES 11 A 156 ASP GLU ILE ILE ARG ARG ALA GLN ALA ALA GLY VAL ASN SEQRES 12 A 156 LEU GLU ASN PHE ARG GLU ARG LEU ASP ASN ALA ARG VAL SEQRES 1 B 156 GLY MSE PRO SER GLU LYS GLN PRO GLN SER LYS GLY ASN SEQRES 2 B 156 LYS MSE ALA ILE LEU LYS LEU ASP GLU HIS LEU TYR ILE SEQRES 3 B 156 SER PRO GLN LEU THR LYS ALA ASP ALA GLU GLN ILE ALA SEQRES 4 B 156 GLN LEU GLY ILE LYS THR ILE ILE CYS ASN ARG PRO ASP SEQRES 5 B 156 ARG GLU GLU GLU SER GLN PRO ASP PHE ALA GLN ILE LYS SEQRES 6 B 156 GLN TRP LEU GLU GLN ALA GLY VAL THR GLY PHE HIS HIS SEQRES 7 B 156 GLN PRO VAL THR ALA ARG ASP ILE GLN LYS HIS ASP VAL SEQRES 8 B 156 GLU THR PHE ARG GLN LEU ILE GLY GLN ALA GLU TYR PRO SEQRES 9 B 156 VAL LEU ALA TYR CYS ARG THR GLY THR ARG CYS SER LEU SEQRES 10 B 156 LEU TRP GLY PHE ARG ARG ALA ALA GLU GLY MSE PRO VAL SEQRES 11 B 156 ASP GLU ILE ILE ARG ARG ALA GLN ALA ALA GLY VAL ASN SEQRES 12 B 156 LEU GLU ASN PHE ARG GLU ARG LEU ASP ASN ALA ARG VAL MODRES 2F46 MSE A 14 MET SELENOMETHIONINE MODRES 2F46 MSE A 127 MET SELENOMETHIONINE MODRES 2F46 MSE B 14 MET SELENOMETHIONINE MODRES 2F46 MSE B 127 MET SELENOMETHIONINE HET MSE A 14 13 HET MSE A 127 8 HET MSE B 14 13 HET MSE B 127 8 HET CL A 156 1 HET CL B 156 1 HET UNL B 157 5 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM UNL UNKNOWN LIGAND FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 CL 2(CL 1-) FORMUL 6 HOH *409(H2 O) HELIX 1 1 THR A 30 ALA A 32 5 3 HELIX 2 2 ASP A 33 GLY A 41 1 9 HELIX 3 3 ASP A 59 GLU A 68 1 10 HELIX 4 4 GLN A 69 GLY A 71 5 3 HELIX 5 5 GLN A 86 GLN A 99 1 14 HELIX 6 6 GLY A 111 GLU A 125 1 15 HELIX 7 7 PRO A 128 ALA A 139 1 12 HELIX 8 8 LEU A 143 ASN A 145 5 3 HELIX 9 9 PHE A 146 ALA A 153 1 8 HELIX 10 10 THR B 30 ALA B 32 5 3 HELIX 11 11 ASP B 33 GLY B 41 1 9 HELIX 12 12 ASP B 59 GLU B 68 1 10 HELIX 13 13 GLN B 69 GLY B 71 5 3 HELIX 14 14 GLN B 86 GLN B 99 1 14 HELIX 15 15 GLY B 111 GLY B 126 1 16 HELIX 16 16 PRO B 128 ALA B 139 1 12 HELIX 17 17 LEU B 143 ASN B 145 5 3 HELIX 18 18 PHE B 146 ALA B 153 1 8 SHEET 1 A 5 LEU A 17 ASP A 20 0 SHEET 2 A 5 LEU A 23 SER A 26 -1 O LEU A 23 N LEU A 19 SHEET 3 A 5 VAL A 104 TYR A 107 1 O VAL A 104 N TYR A 24 SHEET 4 A 5 THR A 44 CYS A 47 1 N THR A 44 O LEU A 105 SHEET 5 A 5 GLY A 74 HIS A 77 1 O HIS A 76 N CYS A 47 SHEET 1 B 5 LEU B 17 ASP B 20 0 SHEET 2 B 5 LEU B 23 SER B 26 -1 O LEU B 23 N LEU B 19 SHEET 3 B 5 VAL B 104 TYR B 107 1 O VAL B 104 N TYR B 24 SHEET 4 B 5 THR B 44 CYS B 47 1 N THR B 44 O LEU B 105 SHEET 5 B 5 GLY B 74 HIS B 77 1 O HIS B 76 N CYS B 47 LINK C LYS A 13 N MSE A 14 1555 1555 1.34 LINK C MSE A 14 N ALA A 15 1555 1555 1.34 LINK C GLY A 126 N MSE A 127 1555 1555 1.33 LINK C MSE A 127 N PRO A 128 1555 1555 1.35 LINK C LYS B 13 N MSE B 14 1555 1555 1.34 LINK C MSE B 14 N ALA B 15 1555 1555 1.33 LINK C GLY B 126 N MSE B 127 1555 1555 1.34 LINK C MSE B 127 N PRO B 128 1555 1555 1.34 CISPEP 1 TYR A 102 PRO A 103 0 -3.65 CISPEP 2 TYR B 102 PRO B 103 0 -3.35 SITE 1 AC1 3 PRO B 50 ASP B 51 HIS B 77 SITE 1 AC2 3 PRO A 50 ASP A 51 HIS A 77 SITE 1 AC3 7 ASP B 84 GLN B 86 HIS B 88 ASP B 89 SITE 2 AC3 7 HOH B 238 HOH B 265 HOH B 316 CRYST1 144.278 33.466 59.899 90.00 96.18 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006930 0.000000 0.000750 0.00000 SCALE2 0.000000 0.029880 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016790 0.00000