HEADER TRANSPORT PROTEIN 29-NOV-05 2F6M TITLE STRUCTURE OF A VPS23-C:VPS28-N SUBCOMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPPRESSOR PROTEIN STP22 OF TEMPERATURE-SENSITIVE ALPHA- COMPND 3 FACTOR RECEPTOR AND ARGININE PERMEASE; COMPND 4 CHAIN: A, C; COMPND 5 FRAGMENT: VPS23C-TERMINAL DOMAIN (322-385); COMPND 6 SYNONYM: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS23; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS28; COMPND 11 CHAIN: B, D; COMPND 12 FRAGMENT: VPS28N-TERMINAL DOMAIN (13-118); COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: STP22, VPS23; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PST39; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 13 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 14 ORGANISM_TAXID: 4932; SOURCE 15 GENE: VPS28, VPT28; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PST39 KEYWDS ENDOSOMES, TRAFFICKING COMPLEX, VPS23, VPS28, VACUOLE PROTEIN KEYWDS 2 SORTING, ESCRT PROTEIN COMPLEXES, ENDOSOMAL SORTING COMPLEX REQUIRED KEYWDS 3 FOR TRANSPORT, ESCRT-I, UBIQUITIN, TSG101, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.S.KOSTELANSKY,S.LEE,J.KIM,J.H.HURLEY REVDAT 5 14-FEB-24 2F6M 1 REMARK REVDAT 4 20-OCT-21 2F6M 1 REMARK SEQADV REVDAT 3 13-JUL-11 2F6M 1 VERSN REVDAT 2 24-FEB-09 2F6M 1 VERSN REVDAT 1 18-APR-06 2F6M 0 JRNL AUTH M.S.KOSTELANSKY,J.SUN,S.LEE,J.KIM,R.GHIRLANDO,A.HIERRO, JRNL AUTH 2 S.D.EMR,J.H.HURLEY JRNL TITL STRUCTURAL AND FUNCTIONAL ORGANIZATION OF THE ESCRT-I JRNL TITL 2 TRAFFICKING COMPLEX. JRNL REF CELL(CAMBRIDGE,MASS.) V. 125 113 2006 JRNL REFN ISSN 0092-8674 JRNL PMID 16615894 JRNL DOI 10.1016/J.CELL.2006.01.049 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 25067 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.242 REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1332 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1477 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2760 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 113 REMARK 3 SOLVENT ATOMS : 40 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.62000 REMARK 3 B22 (A**2) : 0.44000 REMARK 3 B33 (A**2) : -2.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.240 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.190 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.136 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.451 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2909 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3918 ; 0.946 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 333 ; 3.907 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 145 ;39.978 ;25.034 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 518 ;14.436 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;15.560 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 452 ; 0.059 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2094 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1267 ; 0.193 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2031 ; 0.292 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 83 ; 0.146 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 49 ; 0.201 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.112 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1741 ; 0.408 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2746 ; 0.675 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1296 ; 1.106 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1172 ; 1.797 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 321 A 385 REMARK 3 ORIGIN FOR THE GROUP (A): 18.2261 10.6247 52.0683 REMARK 3 T TENSOR REMARK 3 T11: -0.3321 T22: -0.2280 REMARK 3 T33: -0.2364 T12: -0.0605 REMARK 3 T13: -0.0205 T23: -0.0274 REMARK 3 L TENSOR REMARK 3 L11: 3.5788 L22: 9.3596 REMARK 3 L33: 2.5266 L12: -4.4225 REMARK 3 L13: 0.7638 L23: -2.2709 REMARK 3 S TENSOR REMARK 3 S11: 0.0300 S12: 0.0479 S13: 0.0581 REMARK 3 S21: 0.1603 S22: -0.0633 S23: -0.1378 REMARK 3 S31: -0.1257 S32: 0.1854 S33: 0.0333 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 12 B 30 REMARK 3 ORIGIN FOR THE GROUP (A): 9.9026 28.0668 45.8802 REMARK 3 T TENSOR REMARK 3 T11: 0.0361 T22: -0.1666 REMARK 3 T33: 0.0130 T12: 0.0623 REMARK 3 T13: -0.0047 T23: -0.0439 REMARK 3 L TENSOR REMARK 3 L11: 15.5515 L22: 4.2162 REMARK 3 L33: 18.8679 L12: -4.8693 REMARK 3 L13: -16.2147 L23: 2.7791 REMARK 3 S TENSOR REMARK 3 S11: 0.5479 S12: -0.5422 S13: 1.1625 REMARK 3 S21: -0.5560 S22: 0.4401 S23: 0.1423 REMARK 3 S31: -1.1025 S32: 0.5872 S33: -0.9880 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 31 B 58 REMARK 3 ORIGIN FOR THE GROUP (A): 28.3608 9.3302 44.5775 REMARK 3 T TENSOR REMARK 3 T11: -0.2770 T22: -0.0792 REMARK 3 T33: -0.1442 T12: -0.0127 REMARK 3 T13: 0.0834 T23: -0.0261 REMARK 3 L TENSOR REMARK 3 L11: 5.9737 L22: 11.2751 REMARK 3 L33: 15.8200 L12: -6.0036 REMARK 3 L13: 7.1235 L23: -9.0867 REMARK 3 S TENSOR REMARK 3 S11: 0.2246 S12: 0.2059 S13: -0.0657 REMARK 3 S21: -0.5289 S22: -0.2055 S23: -0.4812 REMARK 3 S31: 0.1316 S32: 0.7685 S33: -0.0191 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 59 B 82 REMARK 3 ORIGIN FOR THE GROUP (A): 35.5161 -1.0420 44.9846 REMARK 3 T TENSOR REMARK 3 T11: -0.1421 T22: 0.2656 REMARK 3 T33: 0.1156 T12: 0.2385 REMARK 3 T13: 0.1108 T23: -0.0759 REMARK 3 L TENSOR REMARK 3 L11: 7.8127 L22: 19.7429 REMARK 3 L33: 19.7396 L12: -5.4620 REMARK 3 L13: 2.9255 L23: -13.4583 REMARK 3 S TENSOR REMARK 3 S11: -0.2548 S12: -0.0863 S13: -0.6231 REMARK 3 S21: -0.3806 S22: -0.0512 S23: -1.0455 REMARK 3 S31: 1.0006 S32: 1.2081 S33: 0.3060 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 83 B 100 REMARK 3 ORIGIN FOR THE GROUP (A): 31.3092 20.6750 39.9200 REMARK 3 T TENSOR REMARK 3 T11: 0.4542 T22: 0.6068 REMARK 3 T33: 0.3861 T12: -0.2551 REMARK 3 T13: 0.3259 T23: 0.0443 REMARK 3 L TENSOR REMARK 3 L11: 5.5800 L22: 14.8043 REMARK 3 L33: 38.0133 L12: -2.6785 REMARK 3 L13: -4.7509 L23: 0.2914 REMARK 3 S TENSOR REMARK 3 S11: 0.7575 S12: 0.8814 S13: 0.6946 REMARK 3 S21: -2.4435 S22: -0.5130 S23: -2.4965 REMARK 3 S31: -1.8858 S32: 3.1111 S33: -0.2445 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 101 B 118 REMARK 3 ORIGIN FOR THE GROUP (A): 35.2073 12.7048 52.0626 REMARK 3 T TENSOR REMARK 3 T11: -0.2086 T22: 0.1861 REMARK 3 T33: 0.0692 T12: -0.1397 REMARK 3 T13: -0.0431 T23: -0.0254 REMARK 3 L TENSOR REMARK 3 L11: 15.3539 L22: 20.0954 REMARK 3 L33: 9.4966 L12: -14.9692 REMARK 3 L13: -6.1662 L23: 6.6111 REMARK 3 S TENSOR REMARK 3 S11: 0.0422 S12: -0.1592 S13: 0.5967 REMARK 3 S21: 0.1930 S22: -0.0571 S23: -1.0683 REMARK 3 S31: -0.5180 S32: 1.0353 S33: 0.0149 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 321 C 383 REMARK 3 ORIGIN FOR THE GROUP (A): 11.3241 -7.8005 53.5996 REMARK 3 T TENSOR REMARK 3 T11: -0.1978 T22: -0.2420 REMARK 3 T33: -0.2488 T12: -0.0900 REMARK 3 T13: -0.0539 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 3.8355 L22: 6.4748 REMARK 3 L33: 2.7779 L12: -3.1591 REMARK 3 L13: 0.5915 L23: -0.6674 REMARK 3 S TENSOR REMARK 3 S11: 0.0359 S12: 0.1108 S13: 0.0375 REMARK 3 S21: -0.2389 S22: 0.0484 S23: 0.1432 REMARK 3 S31: 0.5459 S32: -0.0721 S33: -0.0844 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 16 D 30 REMARK 3 ORIGIN FOR THE GROUP (A): 21.3843 -24.5746 48.8428 REMARK 3 T TENSOR REMARK 3 T11: 0.6092 T22: -0.0418 REMARK 3 T33: -0.0531 T12: 0.1833 REMARK 3 T13: -0.0758 T23: -0.0685 REMARK 3 L TENSOR REMARK 3 L11: 4.5956 L22: 3.2114 REMARK 3 L33: 18.1419 L12: -2.2186 REMARK 3 L13: 9.1282 L23: -4.2541 REMARK 3 S TENSOR REMARK 3 S11: 0.0671 S12: 0.1857 S13: -0.3668 REMARK 3 S21: 0.2742 S22: 0.5798 S23: -0.3736 REMARK 3 S31: 1.2881 S32: 0.4104 S33: -0.6470 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 31 D 58 REMARK 3 ORIGIN FOR THE GROUP (A): 2.5497 -8.9243 45.1588 REMARK 3 T TENSOR REMARK 3 T11: -0.1321 T22: -0.0483 REMARK 3 T33: -0.1241 T12: -0.1605 REMARK 3 T13: -0.1665 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 7.5717 L22: 18.2028 REMARK 3 L33: 8.9853 L12: -9.8722 REMARK 3 L13: -7.5867 L23: 9.3664 REMARK 3 S TENSOR REMARK 3 S11: 0.2033 S12: 0.2268 S13: -0.0856 REMARK 3 S21: -0.6085 S22: -0.2430 S23: 0.7055 REMARK 3 S31: 0.1123 S32: -0.4004 S33: 0.0397 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 59 D 82 REMARK 3 ORIGIN FOR THE GROUP (A): -5.4450 0.4490 43.0393 REMARK 3 T TENSOR REMARK 3 T11: -0.1938 T22: 0.1561 REMARK 3 T33: 0.0553 T12: -0.0457 REMARK 3 T13: -0.1766 T23: 0.0462 REMARK 3 L TENSOR REMARK 3 L11: 9.2110 L22: 22.7941 REMARK 3 L33: 12.7086 L12: -7.5952 REMARK 3 L13: -1.4560 L23: 11.5338 REMARK 3 S TENSOR REMARK 3 S11: 0.6427 S12: 0.6852 S13: -0.1276 REMARK 3 S21: -0.9094 S22: -0.8644 S23: 1.1532 REMARK 3 S31: 0.0813 S32: -0.8687 S33: 0.2217 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 83 D 93 REMARK 3 ORIGIN FOR THE GROUP (A): 1.3471 -20.7070 35.0853 REMARK 3 T TENSOR REMARK 3 T11: 0.5024 T22: 0.4203 REMARK 3 T33: 0.4884 T12: -0.0581 REMARK 3 T13: -0.0165 T23: -0.1694 REMARK 3 L TENSOR REMARK 3 L11: 55.4095 L22: 76.4833 REMARK 3 L33: 68.7047 L12: -9.5753 REMARK 3 L13: 23.6321 L23: -36.4123 REMARK 3 S TENSOR REMARK 3 S11: -0.1656 S12: -1.6757 S13: -1.1076 REMARK 3 S21: -4.1032 S22: 1.2941 S23: -0.1648 REMARK 3 S31: 2.0932 S32: -1.2013 S33: -1.1285 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 94 D 117 REMARK 3 ORIGIN FOR THE GROUP (A): -4.5296 -14.7089 49.6570 REMARK 3 T TENSOR REMARK 3 T11: 0.2816 T22: 0.3771 REMARK 3 T33: 0.3396 T12: -0.3459 REMARK 3 T13: -0.0106 T23: -0.0203 REMARK 3 L TENSOR REMARK 3 L11: 27.5172 L22: 15.3691 REMARK 3 L33: 10.9556 L12: -12.8321 REMARK 3 L13: 5.9632 L23: -0.2969 REMARK 3 S TENSOR REMARK 3 S11: 0.2221 S12: 0.2593 S13: -1.1648 REMARK 3 S21: -0.4079 S22: -0.3282 S23: 2.4516 REMARK 3 S31: 0.5634 S32: -1.7988 S33: 0.1061 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2F6M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1000035515. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-05; 29-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SSRL; APS REMARK 200 BEAMLINE : BL9-2; 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9190, 0.9800; 0.9795 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH; MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25067 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07500 REMARK 200 FOR THE DATA SET : 20.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.28500 REMARK 200 FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5MG/ML PROTEIN SOLUTION CONTAINING 40 REMARK 280 MM TRIS PH 7.4, 120 MM NACL, AND 20 MM DDAO WAS MIXED WITH EQUAL REMARK 280 VOLUME OF CRYSTALLANT CONTAINING 13% PEG 3350, 200 MM MGCL2 AND REMARK 280 20% GLYCEROL., VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.61950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.69550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.62600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.69550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.61950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 59.62600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.61950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.62600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 62.69550 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.62600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.61950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 62.69550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS TWO UNITS. REMARK 300 COMPLEX 1 = CHAINS A,B AND COMPLEX 2 = CHAINS C,D REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 10 REMARK 465 ALA B 11 REMARK 465 LEU C 384 REMARK 465 SER C 385 REMARK 465 GLY D 10 REMARK 465 ALA D 11 REMARK 465 MET D 12 REMARK 465 ASP D 13 REMARK 465 ILE D 14 REMARK 465 SER D 15 REMARK 465 GLY D 118 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG C 379 O PRO D 23 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 383 82.94 -59.55 REMARK 500 LEU A 384 44.13 28.20 REMARK 500 PHE B 18 59.35 -118.43 REMARK 500 ASN B 83 44.98 -81.18 REMARK 500 ASN B 86 -23.94 67.89 REMARK 500 LYS B 87 -27.34 79.95 REMARK 500 ALA B 108 47.98 -155.35 REMARK 500 ASP D 60 42.34 -92.68 REMARK 500 SER D 84 -105.38 -144.54 REMARK 500 SER D 96 -148.74 60.87 REMARK 500 ILE D 97 -63.04 -131.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 109 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DDQ A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DDQ A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DDQ B 119 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DDQ C 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DDQ D 119 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DDQ B 120 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DDQ C 108 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1U5T RELATED DB: PDB REMARK 900 RELATED ID: 2F66 RELATED DB: PDB REMARK 900 RELATED ID: 1W7P RELATED DB: PDB REMARK 900 RELATED ID: 1UZX RELATED DB: PDB REMARK 900 RELATED ID: 1XB4 RELATED DB: PDB DBREF 2F6M A 322 385 UNP P25604 STP22_YEAST 322 385 DBREF 2F6M B 13 118 UNP Q02767 VPS28_YEAST 13 118 DBREF 2F6M C 322 385 UNP P25604 STP22_YEAST 322 385 DBREF 2F6M D 13 118 UNP Q02767 VPS28_YEAST 13 118 SEQADV 2F6M MET A 321 UNP P25604 CLONING ARTIFACT SEQADV 2F6M ALA A 344 UNP P25604 CYS 344 ENGINEERED MUTATION SEQADV 2F6M MET C 321 UNP P25604 CLONING ARTIFACT SEQADV 2F6M ALA C 344 UNP P25604 CYS 344 ENGINEERED MUTATION SEQADV 2F6M GLY B 10 UNP Q02767 CLONING ARTIFACT SEQADV 2F6M ALA B 11 UNP Q02767 CLONING ARTIFACT SEQADV 2F6M MET B 12 UNP Q02767 CLONING ARTIFACT SEQADV 2F6M ALA B 101 UNP Q02767 CYS 101 ENGINEERED MUTATION SEQADV 2F6M GLY D 10 UNP Q02767 CLONING ARTIFACT SEQADV 2F6M ALA D 11 UNP Q02767 CLONING ARTIFACT SEQADV 2F6M MET D 12 UNP Q02767 CLONING ARTIFACT SEQADV 2F6M ALA D 101 UNP Q02767 CYS 101 ENGINEERED MUTATION SEQRES 1 A 65 MET THR ASP GLY LEU ASN GLN LEU TYR ASN LEU VAL ALA SEQRES 2 A 65 GLN ASP TYR ALA LEU THR ASP THR ILE GLU ALA LEU SER SEQRES 3 A 65 ARG MET LEU HIS ARG GLY THR ILE PRO LEU ASP THR PHE SEQRES 4 A 65 VAL LYS GLN GLY ARG GLU LEU ALA ARG GLN GLN PHE LEU SEQRES 5 A 65 VAL ARG TRP HIS ILE GLN ARG ILE THR SER PRO LEU SER SEQRES 1 B 109 GLY ALA MET ASP ILE SER GLN LEU PHE HIS ASP GLU VAL SEQRES 2 B 109 PRO LEU PHE ASP ASN SER ILE THR SER LYS ASP LYS GLU SEQRES 3 B 109 VAL ILE GLU THR LEU SER GLU ILE TYR SER ILE VAL ILE SEQRES 4 B 109 THR LEU ASP HIS VAL GLU LYS ALA TYR LEU LYS ASP SER SEQRES 5 B 109 ILE ASP ASP THR GLN TYR THR ASN THR VAL ASP LYS LEU SEQRES 6 B 109 LEU LYS GLN PHE LYS VAL TYR LEU ASN SER GLN ASN LYS SEQRES 7 B 109 GLU GLU ILE ASN LYS HIS PHE GLN SER ILE GLU ALA PHE SEQRES 8 B 109 ALA ASP THR TYR ASN ILE THR ALA SER ASN ALA ILE THR SEQRES 9 B 109 ARG LEU GLU ARG GLY SEQRES 1 C 65 MET THR ASP GLY LEU ASN GLN LEU TYR ASN LEU VAL ALA SEQRES 2 C 65 GLN ASP TYR ALA LEU THR ASP THR ILE GLU ALA LEU SER SEQRES 3 C 65 ARG MET LEU HIS ARG GLY THR ILE PRO LEU ASP THR PHE SEQRES 4 C 65 VAL LYS GLN GLY ARG GLU LEU ALA ARG GLN GLN PHE LEU SEQRES 5 C 65 VAL ARG TRP HIS ILE GLN ARG ILE THR SER PRO LEU SER SEQRES 1 D 109 GLY ALA MET ASP ILE SER GLN LEU PHE HIS ASP GLU VAL SEQRES 2 D 109 PRO LEU PHE ASP ASN SER ILE THR SER LYS ASP LYS GLU SEQRES 3 D 109 VAL ILE GLU THR LEU SER GLU ILE TYR SER ILE VAL ILE SEQRES 4 D 109 THR LEU ASP HIS VAL GLU LYS ALA TYR LEU LYS ASP SER SEQRES 5 D 109 ILE ASP ASP THR GLN TYR THR ASN THR VAL ASP LYS LEU SEQRES 6 D 109 LEU LYS GLN PHE LYS VAL TYR LEU ASN SER GLN ASN LYS SEQRES 7 D 109 GLU GLU ILE ASN LYS HIS PHE GLN SER ILE GLU ALA PHE SEQRES 8 D 109 ALA ASP THR TYR ASN ILE THR ALA SER ASN ALA ILE THR SEQRES 9 D 109 ARG LEU GLU ARG GLY HET MG A 109 1 HET DDQ A 101 14 HET DDQ A 102 14 HET DDQ A 104 14 HET DDQ B 119 14 HET DDQ B 120 14 HET DDQ C 105 14 HET DDQ C 108 14 HET DDQ D 119 14 HETNAM MG MAGNESIUM ION HETNAM DDQ DECYLAMINE-N,N-DIMETHYL-N-OXIDE FORMUL 5 MG MG 2+ FORMUL 6 DDQ 8(C12 H27 N O) FORMUL 14 HOH *40(H2 O) HELIX 1 1 THR A 322 GLY A 352 1 31 HELIX 2 2 PRO A 355 SER A 382 1 28 HELIX 3 3 ASP B 13 PHE B 18 1 6 HELIX 4 4 THR B 30 LYS B 59 1 30 HELIX 5 5 ASP B 63 ASN B 83 1 21 HELIX 6 6 GLU B 88 TYR B 104 1 17 HELIX 7 7 ALA B 108 GLY B 118 1 11 HELIX 8 8 THR C 322 ARG C 351 1 30 HELIX 9 9 PRO C 355 THR C 381 1 27 HELIX 10 10 THR D 30 LYS D 59 1 30 HELIX 11 11 ASP D 63 ASN D 83 1 21 HELIX 12 12 ASN D 86 PHE D 94 1 9 HELIX 13 13 GLU D 98 TYR D 104 1 7 HELIX 14 14 ALA D 108 ARG D 117 1 10 SITE 1 AC1 1 ASP A 340 SITE 1 AC2 5 THR A 341 LEU A 366 LEU C 345 GLN C 362 SITE 2 AC2 5 LEU C 366 SITE 1 AC3 5 THR A 358 HOH C 6 HOH C 10 GLN C 334 SITE 2 AC3 5 GLN C 369 SITE 1 AC4 4 TRP A 375 GLN A 378 TYR B 44 SER B 96 SITE 1 AC5 3 MET C 321 ILE C 377 THR C 381 SITE 1 AC6 3 ASN C 326 TYR C 329 THR D 103 SITE 1 AC7 3 TYR A 329 ASP A 335 TYR B 104 SITE 1 AC8 4 THR C 322 LEU C 328 PRO C 383 GLN D 16 CRYST1 61.239 119.252 125.391 90.00 90.00 90.00 I 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016329 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008386 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007975 0.00000