HEADER HYDROLASE 06-DEC-05 2F9M TITLE 3D STRUCTURE OF ACTIVE HUMAN RAB11B GTPASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAB11B, MEMBER RAS ONCOGENE FAMILY; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: GTPASE DOMAIN, RESIDUES 8 TO 205; COMPND 5 EC: 3.6.5.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: DH5ALPHA; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PCYTEXP3 KEYWDS RAB11B GTPASE, VESICLE TRANSPORT, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.M.N.SCAPIN,B.G.GUIMARAES,N.I.T.ZANCHIN REVDAT 6 14-FEB-24 2F9M 1 REMARK SEQADV LINK REVDAT 5 24-JAN-18 2F9M 1 AUTHOR REVDAT 4 18-OCT-17 2F9M 1 REMARK REVDAT 3 24-FEB-09 2F9M 1 VERSN REVDAT 2 30-MAY-06 2F9M 1 JRNL REVDAT 1 04-APR-06 2F9M 0 JRNL AUTH S.M.SCAPIN,F.R.CARNEIRO,A.C.ALVES,F.J.MEDRANO,B.G.GUIMARAES, JRNL AUTH 2 N.I.ZANCHIN JRNL TITL THE CRYSTAL STRUCTURE OF THE SMALL GTPASE RAB11B REVEALS JRNL TITL 2 CRITICAL DIFFERENCES RELATIVE TO THE RAB11A ISOFORM. JRNL REF J.STRUCT.BIOL. V. 154 260 2006 JRNL REFN ISSN 1047-8477 JRNL PMID 16545962 JRNL DOI 10.1016/J.JSB.2006.01.007 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 17437 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 940 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1263 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2040 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.2710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1456 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 286 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.66000 REMARK 3 B22 (A**2) : -0.59000 REMARK 3 B33 (A**2) : 1.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.134 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.130 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.655 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1513 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2051 ; 1.263 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 181 ; 5.570 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 74 ;36.324 ;23.649 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 265 ;14.483 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;13.887 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 231 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1122 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 921 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1069 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 287 ; 0.149 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.071 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 63 ; 0.225 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 40 ; 0.135 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 915 ; 0.560 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1449 ; 1.036 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 671 ; 1.763 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 602 ; 2.926 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2F9M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JAN-06. REMARK 100 THE DEPOSITION ID IS D_1000035623. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-SEP-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : D03B-MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.43 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18222 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 33.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09000 REMARK 200 FOR THE DATA SET : 19.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.33100 REMARK 200 FOR SHELL : 6.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RESERVOIR SOLUTION: 0.1M TRIS-HCL REMARK 280 PH8.5, 1M LITHIUM SULFATE, 0.01M NICKEL CHLORIDE. PROTEIN SAMPLE: REMARK 280 68 MG/ML RAB11B-GPPNHP, 10MM TRIS-HCL PH7.4, 0.1MM MAGNESIUM REMARK 280 CHLORIDE., VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.30550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.44300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.70450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.44300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.30550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.70450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.30550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.70450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 43.44300 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.70450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.30550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 43.44300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1205 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1244 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1320 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 189 REMARK 465 SER A 190 REMARK 465 PRO A 191 REMARK 465 GLY A 192 REMARK 465 ASN A 193 REMARK 465 ASN A 194 REMARK 465 VAL A 195 REMARK 465 VAL A 196 REMARK 465 ASP A 197 REMARK 465 ILE A 198 REMARK 465 SER A 199 REMARK 465 VAL A 200 REMARK 465 PRO A 201 REMARK 465 PRO A 202 REMARK 465 THR A 203 REMARK 465 THR A 204 REMARK 465 ASP A 205 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 75 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG GLU A 103 O HOH A 1480 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 125 35.95 71.47 REMARK 500 LEU A 128 40.06 -90.83 REMARK 500 SER A 158 -9.45 84.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A1203 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 7 N REMARK 620 2 MET A 7 O 78.0 REMARK 620 3 ASP A 183 OD2 91.3 90.1 REMARK 620 4 HIS A 187 NE2 173.8 99.3 94.3 REMARK 620 5 HOH A1247 O 88.4 91.7 178.0 86.1 REMARK 620 6 HOH A1483 O 95.9 171.4 96.1 86.1 82.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 25 OG REMARK 620 2 THR A 43 OG1 76.1 REMARK 620 3 GNP A1200 O2G 170.3 94.2 REMARK 620 4 GNP A1200 O2B 91.4 166.4 98.3 REMARK 620 5 HOH A1211 O 89.5 86.2 90.5 88.2 REMARK 620 6 HOH A1220 O 86.3 93.6 93.8 91.1 175.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A1202 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 108 OE1 REMARK 620 2 HIS A 112 NE2 96.1 REMARK 620 3 HOH A1264 O 171.9 91.8 REMARK 620 4 HOH A1281 O 99.5 90.8 78.3 REMARK 620 5 HOH A1300 O 93.3 166.8 78.6 78.4 REMARK 620 6 HOH A1348 O 88.3 97.8 92.7 167.7 91.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 1200 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2F9L RELATED DB: PDB REMARK 900 INACTIVE HUMAN RAB11B GTPASE DBREF 2F9M A 8 205 UNP Q15907 RB11B_HUMAN 8 205 SEQADV 2F9M MET A 7 UNP Q15907 INITIATING METHIONINE SEQRES 1 A 199 MET TYR ASP TYR LEU PHE LYS VAL VAL LEU ILE GLY ASP SEQRES 2 A 199 SER GLY VAL GLY LYS SER ASN LEU LEU SER ARG PHE THR SEQRES 3 A 199 ARG ASN GLU PHE ASN LEU GLU SER LYS SER THR ILE GLY SEQRES 4 A 199 VAL GLU PHE ALA THR ARG SER ILE GLN VAL ASP GLY LYS SEQRES 5 A 199 THR ILE LYS ALA GLN ILE TRP ASP THR ALA GLY GLN GLU SEQRES 6 A 199 ARG TYR ARG ARG ILE THR SER ALA TYR TYR ARG GLY ALA SEQRES 7 A 199 VAL GLY ALA LEU LEU VAL TYR ASP ILE ALA LYS HIS LEU SEQRES 8 A 199 THR TYR GLU ASN VAL GLU ARG TRP LEU LYS GLU LEU ARG SEQRES 9 A 199 ASP HIS ALA ASP SER ASN ILE VAL ILE MET LEU VAL GLY SEQRES 10 A 199 ASN LYS SER ASP LEU ARG HIS LEU ARG ALA VAL PRO THR SEQRES 11 A 199 ASP GLU ALA ARG ALA PHE ALA GLU LYS ASN ASN LEU SER SEQRES 12 A 199 PHE ILE GLU THR SER ALA LEU ASP SER THR ASN VAL GLU SEQRES 13 A 199 GLU ALA PHE LYS ASN ILE LEU THR GLU ILE TYR ARG ILE SEQRES 14 A 199 VAL SER GLN LYS GLN ILE ALA ASP ARG ALA ALA HIS ASP SEQRES 15 A 199 GLU SER PRO GLY ASN ASN VAL VAL ASP ILE SER VAL PRO SEQRES 16 A 199 PRO THR THR ASP HET MG A1201 1 HET NI A1202 1 HET NI A1203 1 HET GNP A1200 32 HETNAM MG MAGNESIUM ION HETNAM NI NICKEL (II) ION HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER FORMUL 2 MG MG 2+ FORMUL 3 NI 2(NI 2+) FORMUL 5 GNP C10 H17 N6 O13 P3 FORMUL 6 HOH *286(H2 O) HELIX 1 1 GLY A 23 ASN A 34 1 12 HELIX 2 2 THR A 77 ARG A 82 1 6 HELIX 3 3 LYS A 95 ASN A 101 1 7 HELIX 4 4 ASN A 101 ALA A 113 1 13 HELIX 5 5 LYS A 125 ARG A 132 5 8 HELIX 6 6 PRO A 135 ASN A 146 1 12 HELIX 7 7 ASN A 160 ASP A 188 1 29 SHEET 1 A 6 VAL A 46 VAL A 55 0 SHEET 2 A 6 LYS A 58 THR A 67 -1 O ILE A 60 N ILE A 53 SHEET 3 A 6 TYR A 10 ILE A 17 1 N TYR A 10 O LYS A 61 SHEET 4 A 6 ALA A 84 ASP A 92 1 O VAL A 90 N ILE A 17 SHEET 5 A 6 VAL A 118 ASN A 124 1 O ASN A 124 N TYR A 91 SHEET 6 A 6 SER A 149 GLU A 152 1 O SER A 149 N LEU A 121 LINK N MET A 7 NI NI A1203 8555 1555 2.33 LINK O MET A 7 NI NI A1203 8555 1555 2.01 LINK OG SER A 25 MG MG A1201 1555 1555 1.99 LINK OG1 THR A 43 MG MG A1201 1555 1555 2.09 LINK OE1 GLU A 108 NI NI A1202 1555 1555 2.09 LINK NE2 HIS A 112 NI NI A1202 1555 1555 2.02 LINK OD2 ASP A 183 NI NI A1203 1555 1555 2.09 LINK NE2 HIS A 187 NI NI A1203 1555 1555 2.08 LINK O2G GNP A1200 MG MG A1201 1555 1555 1.94 LINK O2B GNP A1200 MG MG A1201 1555 1555 1.98 LINK MG MG A1201 O HOH A1211 1555 1555 1.88 LINK MG MG A1201 O HOH A1220 1555 1555 2.02 LINK NI NI A1202 O HOH A1264 1555 1555 2.31 LINK NI NI A1202 O HOH A1281 1555 1555 2.20 LINK NI NI A1202 O HOH A1300 1555 1555 2.17 LINK NI NI A1202 O HOH A1348 1555 1555 2.16 LINK NI NI A1203 O HOH A1247 1555 1555 2.24 LINK NI NI A1203 O HOH A1483 1555 8555 2.14 SITE 1 AC1 5 SER A 25 THR A 43 GNP A1200 HOH A1211 SITE 2 AC1 5 HOH A1220 SITE 1 AC2 6 GLU A 108 HIS A 112 HOH A1264 HOH A1281 SITE 2 AC2 6 HOH A1300 HOH A1348 SITE 1 AC3 5 MET A 7 ASP A 183 HIS A 187 HOH A1247 SITE 2 AC3 5 HOH A1483 SITE 1 AC4 30 SER A 20 GLY A 21 VAL A 22 GLY A 23 SITE 2 AC4 30 LYS A 24 SER A 25 ASN A 26 PHE A 36 SITE 3 AC4 30 ASN A 37 LEU A 38 SER A 40 SER A 42 SITE 4 AC4 30 THR A 43 ALA A 68 GLY A 69 ASN A 124 SITE 5 AC4 30 LYS A 125 ASP A 127 LEU A 128 SER A 154 SITE 6 AC4 30 ALA A 155 LEU A 156 MG A1201 HOH A1211 SITE 7 AC4 30 HOH A1220 HOH A1221 HOH A1245 HOH A1282 SITE 8 AC4 30 HOH A1344 HOH A1464 CRYST1 66.611 85.409 86.886 90.00 90.00 90.00 I 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015013 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011708 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011509 0.00000