HEADER LIGASE 06-DEC-05 2F9Y TITLE THE CRYSTAL STRUCTURE OF THE CARBOXYLTRANSFERASE SUBUNIT OF ACC FROM TITLE 2 ESCHERICHIA COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETYL-COA CARBOXYLASE, CARBOXYLTRANSFERASE ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 EC: 6.4.1.2; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ACETYL-COENZYME A CARBOXYLASE CARBOXYL TRANSFERASE SUBUNIT COMPND 8 BETA; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: ACCASE BETA CHAIN; COMPND 11 EC: 6.4.1.2; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21-DE3PLYSS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PCZB4(PET14); SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 562; SOURCE 12 GENE: ACCD; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: BL21-DE3PLYSS; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 17 EXPRESSION_SYSTEM_PLASMID: PCZB4(PET14) KEYWDS ZINC RIBBON, CROTONASE SUPERFAMILY, SPIRAL DOMAIN, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR P.W.BILDER REVDAT 6 16-OCT-24 2F9Y 1 REMARK REVDAT 5 30-AUG-23 2F9Y 1 REMARK SEQADV LINK REVDAT 4 18-OCT-17 2F9Y 1 REMARK REVDAT 3 13-JUL-11 2F9Y 1 VERSN REVDAT 2 24-FEB-09 2F9Y 1 VERSN REVDAT 1 12-DEC-06 2F9Y 0 JRNL AUTH P.BILDER,S.LIGHTLE,G.BAINBRIDGE,J.OHREN,B.FINZEL,F.SUN, JRNL AUTH 2 S.HOLLEY,L.AL-KASSIM,C.SPESSARD,M.MELNICK,M.NEWCOMER, JRNL AUTH 3 G.L.WALDROP JRNL TITL THE STRUCTURE OF THE CARBOXYLTRANSFERASE COMPONENT OF JRNL TITL 2 ACETYL-COA CARBOXYLASE REVEALS A ZINC-BINDING MOTIF UNIQUE JRNL TITL 3 TO THE BACTERIAL ENZYME(,). JRNL REF BIOCHEMISTRY V. 45 1712 2006 JRNL REFN ISSN 0006-2960 JRNL PMID 16460018 JRNL DOI 10.1021/BI0520479 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 232301.660 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 22466 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.257 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2247 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.40 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3140 REMARK 3 BIN R VALUE (WORKING SET) : 0.3670 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 366 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.018 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4258 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 7 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 0.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 79.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.46000 REMARK 3 B22 (A**2) : -5.46000 REMARK 3 B33 (A**2) : 10.92000 REMARK 3 B12 (A**2) : 11.77000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.45 REMARK 3 ESD FROM SIGMAA (A) : 0.65 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.44 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.57 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.770 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 12.700; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 19.800; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 26.100; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 32.400; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.28 REMARK 3 BSOL : 71.13 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2F9Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1000035635. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JAN-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 9.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23565 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06800 REMARK 200 FOR THE DATA SET : 26.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.41200 REMARK 200 FOR SHELL : 8.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2F9I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1M NAH2PO4, 1M K2HPO4, 2M LI2SO4, 1M REMARK 280 CAPS, PH 9.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K, REMARK 280 PH 9.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.499997 -0.866031 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866020 -0.500003 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 128.54933 REMARK 290 SMTRY1 3 -0.500003 0.866031 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866020 -0.499997 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 64.27467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 96.41200 REMARK 290 SMTRY1 5 0.499997 0.866031 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866020 0.500003 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 32.13733 REMARK 290 SMTRY1 6 0.500003 -0.866031 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866020 0.499997 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 160.68667 REMARK 290 SMTRY1 7 -0.499997 0.866035 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866020 0.499997 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 128.54933 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500003 -0.866027 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866020 0.500003 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 64.27467 REMARK 290 SMTRY1 10 0.499997 -0.866035 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866020 -0.499997 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 32.13733 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 96.41200 REMARK 290 SMTRY1 12 0.500003 0.866027 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866020 -0.500003 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 160.68667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER GENERATED FROM THE REMARK 300 DIMER IN THE ASYMMETRIC UNIT BY THE TRANSFORMATION -Y, -X, -Z+1/6 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 12490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -94.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.499997 0.866035 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866020 0.499997 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -64.27467 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LEU A 3 REMARK 465 LEU A 22 REMARK 465 THR A 23 REMARK 465 ALA A 24 REMARK 465 GLY A 25 REMARK 465 SER A 26 REMARK 465 ARG A 27 REMARK 465 GLN A 28 REMARK 465 ASP A 29 REMARK 465 GLU A 30 REMARK 465 LYS A 31 REMARK 465 LEU A 32 REMARK 465 ASP A 33 REMARK 465 ILE A 34 REMARK 465 ASN A 35 REMARK 465 ILE A 36 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 TRP B 3 REMARK 465 ILE B 4 REMARK 465 GLU B 5 REMARK 465 ARG B 6 REMARK 465 ILE B 7 REMARK 465 LYS B 8 REMARK 465 SER B 9 REMARK 465 ASN B 10 REMARK 465 ILE B 11 REMARK 465 THR B 12 REMARK 465 PRO B 13 REMARK 465 THR B 14 REMARK 465 ARG B 15 REMARK 465 LYS B 16 REMARK 465 ALA B 17 REMARK 465 SER B 18 REMARK 465 ILE B 19 REMARK 465 PRO B 20 REMARK 465 GLU B 21 REMARK 465 GLY B 22 REMARK 465 ASP B 93 REMARK 465 ARG B 94 REMARK 465 LEU B 95 REMARK 465 ALA B 96 REMARK 465 SER B 97 REMARK 465 ALA B 98 REMARK 465 GLU B 286 REMARK 465 ALA B 287 REMARK 465 PRO B 288 REMARK 465 ARG B 289 REMARK 465 GLU B 290 REMARK 465 GLY B 291 REMARK 465 VAL B 292 REMARK 465 VAL B 293 REMARK 465 VAL B 294 REMARK 465 PRO B 295 REMARK 465 PRO B 296 REMARK 465 VAL B 297 REMARK 465 PRO B 298 REMARK 465 ASP B 299 REMARK 465 GLN B 300 REMARK 465 GLU B 301 REMARK 465 PRO B 302 REMARK 465 GLU B 303 REMARK 465 ALA B 304 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 16 CG CD OE1 OE2 REMARK 470 LYS A 18 CG CD CE NZ REMARK 470 ILE A 19 CG1 CG2 CD1 REMARK 470 ASP A 20 CG OD1 OD2 REMARK 470 SER A 21 OG REMARK 470 ASP A 37 CG OD1 OD2 REMARK 470 GLU A 38 CG CD OE1 OE2 REMARK 470 HIS A 41 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 46 CG CD CE NZ REMARK 470 ARG A 255 CG CD NE CZ NH1 NH2 REMARK 470 TYR B 91 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PRO B 285 CG CD REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASN A 4 CB REMARK 480 PHE A 5 CB REMARK 480 GLU A 14 O REMARK 480 LEU A 15 CB REMARK 480 ALA A 17 CB REMARK 480 LYS A 18 O REMARK 480 ILE A 19 O REMARK 480 ASP A 20 C O REMARK 480 SER A 21 O REMARK 480 ASP A 37 CB REMARK 480 GLU A 38 CB REMARK 480 GLU A 39 CB REMARK 480 VAL A 40 CB REMARK 480 HIS A 41 CB REMARK 480 LEU A 43 CB REMARK 480 ARG A 44 CB REMARK 480 GLU A 45 CB REMARK 480 LYS A 46 O REMARK 480 SER A 47 O REMARK 480 GLN A 62 CB REMARK 480 GLU A 123 O REMARK 480 LYS A 125 CB CG CD CE REMARK 480 GLU A 138 OE1 REMARK 480 LEU A 237 CD2 REMARK 480 TRP A 238 CD1 REMARK 480 LYS A 239 CD REMARK 480 ASP A 242 CB REMARK 480 GLU A 260 CG CD REMARK 480 LEU A 272 CD2 REMARK 480 ASP A 298 CG REMARK 480 LYS B 26 CE NZ REMARK 480 GLN B 32 CG CD REMARK 480 VAL B 33 CG2 REMARK 480 GLU B 38 OE2 REMARK 480 CYS B 49 N REMARK 480 HIS B 62 CG REMARK 480 LYS B 105 NZ REMARK 480 MET B 134 CE REMARK 480 ARG B 231 NH1 REMARK 480 GLU B 239 CB REMARK 480 LYS B 240 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 49 CA - CB - SG ANGL. DEV. = 10.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 5 136.46 -24.85 REMARK 500 LEU A 6 -168.25 -72.00 REMARK 500 ASP A 7 -92.73 -65.37 REMARK 500 PHE A 8 8.15 -56.34 REMARK 500 GLU A 38 -15.53 -168.04 REMARK 500 HIS A 41 -11.68 -46.73 REMARK 500 ARG A 44 8.14 -64.85 REMARK 500 LEU A 50 -70.89 75.70 REMARK 500 ASP A 57 72.32 -119.79 REMARK 500 ALA A 94 -18.87 -145.97 REMARK 500 TYR A 95 -56.52 -141.59 REMARK 500 LYS A 120 -82.76 -75.92 REMARK 500 ARG A 122 -71.26 -51.81 REMARK 500 LYS A 125 -39.68 165.37 REMARK 500 ASN A 131 40.26 28.87 REMARK 500 PHE A 153 53.67 -110.51 REMARK 500 LYS A 154 55.11 22.31 REMARK 500 ASP A 162 81.53 -170.50 REMARK 500 SER A 205 -156.92 41.65 REMARK 500 ILE A 211 26.91 -148.32 REMARK 500 TYR A 225 127.85 -172.35 REMARK 500 ILE A 228 147.88 -177.28 REMARK 500 CYS A 233 -38.57 -35.33 REMARK 500 SER A 235 13.06 -64.21 REMARK 500 TRP A 238 9.20 -155.29 REMARK 500 LYS A 239 33.48 36.66 REMARK 500 LYS A 243 29.56 -77.16 REMARK 500 ARG A 257 -32.23 -34.81 REMARK 500 GLU A 260 8.36 -65.86 REMARK 500 LYS A 262 10.35 47.97 REMARK 500 PRO A 271 -178.56 -55.41 REMARK 500 ASN A 278 78.17 -172.73 REMARK 500 ALA A 292 -71.81 -59.95 REMARK 500 LEU A 294 13.34 -58.42 REMARK 500 ALA A 295 -34.82 -135.69 REMARK 500 ASP B 28 -78.11 -48.17 REMARK 500 SER B 29 76.19 -105.84 REMARK 500 CYS B 30 -42.53 173.83 REMARK 500 GLN B 32 104.42 -52.29 REMARK 500 LEU B 39 59.30 -68.67 REMARK 500 GLU B 40 -69.94 -132.43 REMARK 500 LEU B 43 90.64 35.90 REMARK 500 GLU B 44 43.47 24.31 REMARK 500 ASP B 50 -2.60 63.16 REMARK 500 THR B 56 141.69 -35.31 REMARK 500 SER B 63 -8.23 -54.10 REMARK 500 LEU B 64 -74.80 -105.52 REMARK 500 LEU B 65 150.22 -48.78 REMARK 500 ASP B 66 -145.00 -56.69 REMARK 500 GLU B 76 43.40 -83.17 REMARK 500 REMARK 500 THIS ENTRY HAS 74 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 305 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 27 SG REMARK 620 2 CYS B 30 SG 129.0 REMARK 620 3 CYS B 46 SG 87.6 143.3 REMARK 620 4 CYS B 49 SG 85.1 111.7 62.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2F9I RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CARBOXYLTRANSFERASE SUBUNIT OF ACC FROM REMARK 900 STAPHYLOCOCCUS AUREUS DBREF 2F9Y A 1 319 GB 4902926 BAA77860 1 319 DBREF 2F9Y B 1 304 UNP P0A9Q6 ACCD_ECO57 1 304 SEQADV 2F9Y MET A -19 GB 4902926 CLONING ARTIFACT SEQADV 2F9Y GLY A -18 GB 4902926 CLONING ARTIFACT SEQADV 2F9Y SER A -17 GB 4902926 CLONING ARTIFACT SEQADV 2F9Y SER A -16 GB 4902926 CLONING ARTIFACT SEQADV 2F9Y HIS A -15 GB 4902926 EXPRESSION TAG SEQADV 2F9Y HIS A -14 GB 4902926 EXPRESSION TAG SEQADV 2F9Y HIS A -13 GB 4902926 EXPRESSION TAG SEQADV 2F9Y HIS A -12 GB 4902926 EXPRESSION TAG SEQADV 2F9Y HIS A -11 GB 4902926 EXPRESSION TAG SEQADV 2F9Y HIS A -10 GB 4902926 EXPRESSION TAG SEQADV 2F9Y SER A -9 GB 4902926 CLONING ARTIFACT SEQADV 2F9Y SER A -8 GB 4902926 CLONING ARTIFACT SEQADV 2F9Y GLY A -7 GB 4902926 CLONING ARTIFACT SEQADV 2F9Y LEU A -6 GB 4902926 CLONING ARTIFACT SEQADV 2F9Y VAL A -5 GB 4902926 CLONING ARTIFACT SEQADV 2F9Y PRO A -4 GB 4902926 CLONING ARTIFACT SEQADV 2F9Y ARG A -3 GB 4902926 CLONING ARTIFACT SEQADV 2F9Y GLY A -2 GB 4902926 CLONING ARTIFACT SEQADV 2F9Y SER A -1 GB 4902926 CLONING ARTIFACT SEQADV 2F9Y HIS A 0 GB 4902926 CLONING ARTIFACT SEQRES 1 A 339 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 339 LEU VAL PRO ARG GLY SER HIS MET SER LEU ASN PHE LEU SEQRES 3 A 339 ASP PHE GLU GLN PRO ILE ALA GLU LEU GLU ALA LYS ILE SEQRES 4 A 339 ASP SER LEU THR ALA GLY SER ARG GLN ASP GLU LYS LEU SEQRES 5 A 339 ASP ILE ASN ILE ASP GLU GLU VAL HIS ARG LEU ARG GLU SEQRES 6 A 339 LYS SER VAL GLU LEU THR ARG LYS ILE PHE ALA ASP LEU SEQRES 7 A 339 GLY ALA TRP GLN ILE ALA GLN LEU ALA ARG HIS PRO GLN SEQRES 8 A 339 ARG PRO TYR THR LEU ASP TYR VAL ARG LEU ALA PHE ASP SEQRES 9 A 339 GLU PHE ASP GLU LEU ALA GLY ASP ARG ALA TYR ALA ASP SEQRES 10 A 339 ASP LYS ALA ILE VAL GLY GLY ILE ALA ARG LEU ASP GLY SEQRES 11 A 339 ARG PRO VAL MET ILE ILE GLY HIS GLN LYS GLY ARG GLU SEQRES 12 A 339 THR LYS GLU LYS ILE ARG ARG ASN PHE GLY MET PRO ALA SEQRES 13 A 339 PRO GLU GLY TYR ARG LYS ALA LEU ARG LEU MET GLN MET SEQRES 14 A 339 ALA GLU ARG PHE LYS MET PRO ILE ILE THR PHE ILE ASP SEQRES 15 A 339 THR PRO GLY ALA TYR PRO GLY VAL GLY ALA GLU GLU ARG SEQRES 16 A 339 GLY GLN SER GLU ALA ILE ALA ARG ASN LEU ARG GLU MET SEQRES 17 A 339 SER ARG LEU GLY VAL PRO VAL VAL CYS THR VAL ILE GLY SEQRES 18 A 339 GLU GLY GLY SER GLY GLY ALA LEU ALA ILE GLY VAL GLY SEQRES 19 A 339 ASP LYS VAL ASN MET LEU GLN TYR SER THR TYR SER VAL SEQRES 20 A 339 ILE SER PRO GLU GLY CYS ALA SER ILE LEU TRP LYS SER SEQRES 21 A 339 ALA ASP LYS ALA PRO LEU ALA ALA GLU ALA MET GLY ILE SEQRES 22 A 339 ILE ARG PRO ARG LEU LYS GLU LEU LYS LEU ILE ASP SER SEQRES 23 A 339 ILE ILE PRO GLU PRO LEU GLY GLY ALA HIS ARG ASN PRO SEQRES 24 A 339 GLU ALA MET ALA ALA SER LEU LYS ALA GLN LEU LEU ALA SEQRES 25 A 339 ASP LEU ALA ASP LEU ASP VAL LEU SER THR GLU ASP LEU SEQRES 26 A 339 LYS ASN ARG ARG TYR GLN ARG LEU MET SER TYR GLY TYR SEQRES 27 A 339 ALA SEQRES 1 B 304 MET SER TRP ILE GLU ARG ILE LYS SER ASN ILE THR PRO SEQRES 2 B 304 THR ARG LYS ALA SER ILE PRO GLU GLY VAL TRP THR LYS SEQRES 3 B 304 CYS ASP SER CYS GLY GLN VAL LEU TYR ARG ALA GLU LEU SEQRES 4 B 304 GLU ARG ASN LEU GLU VAL CYS PRO LYS CYS ASP HIS HIS SEQRES 5 B 304 MET ARG MET THR ALA ARG ASN ARG LEU HIS SER LEU LEU SEQRES 6 B 304 ASP GLU GLY SER LEU VAL GLU LEU GLY SER GLU LEU GLU SEQRES 7 B 304 PRO LYS ASP VAL LEU LYS PHE ARG ASP SER LYS LYS TYR SEQRES 8 B 304 LYS ASP ARG LEU ALA SER ALA GLN LYS GLU THR GLY GLU SEQRES 9 B 304 LYS ASP ALA LEU VAL VAL MET LYS GLY THR LEU TYR GLY SEQRES 10 B 304 MET PRO VAL VAL ALA ALA ALA PHE GLU PHE ALA PHE MET SEQRES 11 B 304 GLY GLY SER MET GLY SER VAL VAL GLY ALA ARG PHE VAL SEQRES 12 B 304 ARG ALA VAL GLU GLN ALA LEU GLU ASP ASN CYS PRO LEU SEQRES 13 B 304 ILE CYS PHE SER ALA SER GLY GLY ALA ARG MET GLN GLU SEQRES 14 B 304 ALA LEU MET SER LEU MET GLN MET ALA LYS THR SER ALA SEQRES 15 B 304 ALA LEU ALA LYS MET GLN GLU ARG GLY LEU PRO TYR ILE SEQRES 16 B 304 SER VAL LEU THR ASP PRO THR MET GLY GLY VAL SER ALA SEQRES 17 B 304 SER PHE ALA MET LEU GLY ASP LEU ASN ILE ALA GLU PRO SEQRES 18 B 304 LYS ALA LEU ILE GLY PHE ALA GLY PRO ARG VAL ILE GLU SEQRES 19 B 304 GLN THR VAL ARG GLU LYS LEU PRO PRO GLY PHE GLN ARG SEQRES 20 B 304 SER GLU PHE LEU ILE GLU LYS GLY ALA ILE ASP MET ILE SEQRES 21 B 304 VAL ARG ARG PRO GLU MET ARG LEU LYS LEU ALA SER ILE SEQRES 22 B 304 LEU ALA LYS LEU MET ASN LEU PRO ALA PRO ASN PRO GLU SEQRES 23 B 304 ALA PRO ARG GLU GLY VAL VAL VAL PRO PRO VAL PRO ASP SEQRES 24 B 304 GLN GLU PRO GLU ALA HET ZN B 305 1 HETNAM ZN ZINC ION FORMUL 3 ZN ZN 2+ FORMUL 4 HOH *7(H2 O) HELIX 1 1 GLU A 9 LEU A 15 1 7 HELIX 2 2 GLU A 38 ARG A 42 5 5 HELIX 3 3 LEU A 43 GLU A 49 1 7 HELIX 4 4 ARG A 52 ASP A 57 1 6 HELIX 5 5 GLY A 59 ARG A 68 1 10 HELIX 6 6 TYR A 74 PHE A 83 1 10 HELIX 7 7 LYS A 125 ARG A 130 1 6 HELIX 8 8 ASN A 131 MET A 134 5 4 HELIX 9 9 ALA A 136 PHE A 153 1 18 HELIX 10 10 GLY A 169 ARG A 175 1 7 HELIX 11 11 GLY A 176 ARG A 190 1 15 HELIX 12 12 SER A 205 ALA A 210 1 6 HELIX 13 13 SER A 229 TRP A 238 1 10 HELIX 14 14 LYS A 243 GLY A 252 1 10 HELIX 15 15 ILE A 254 GLU A 260 1 7 HELIX 16 16 GLY A 274 ARG A 277 5 4 HELIX 17 17 ASN A 278 LEU A 294 1 17 HELIX 18 18 SER A 301 TYR A 316 1 16 HELIX 19 19 THR B 56 LEU B 65 1 10 HELIX 20 20 ASP B 87 TYR B 91 5 5 HELIX 21 21 SER B 136 ASN B 153 1 18 HELIX 22 22 ARG B 166 GLU B 169 5 4 HELIX 23 23 ALA B 170 ARG B 190 1 21 HELIX 24 24 GLY B 204 ALA B 208 1 5 HELIX 25 25 SER B 209 LEU B 213 5 5 HELIX 26 26 GLY B 229 ARG B 238 1 10 HELIX 27 27 ARG B 247 ILE B 252 1 6 HELIX 28 28 GLU B 253 GLY B 255 5 3 HELIX 29 29 ARG B 262 MET B 278 1 17 SHEET 1 A 6 ASP A 84 GLU A 88 0 SHEET 2 A 6 ILE A 101 LEU A 108 -1 O ARG A 107 N ASP A 84 SHEET 3 A 6 ARG A 111 HIS A 118 -1 O VAL A 113 N ALA A 106 SHEET 4 A 6 ILE A 157 THR A 163 1 O ILE A 158 N MET A 114 SHEET 5 A 6 VAL A 195 GLY A 204 1 O GLU A 202 N THR A 163 SHEET 6 A 6 LYS A 216 MET A 219 1 O LYS A 216 N CYS A 197 SHEET 1 B 6 ASP A 84 GLU A 88 0 SHEET 2 B 6 ILE A 101 LEU A 108 -1 O ARG A 107 N ASP A 84 SHEET 3 B 6 ARG A 111 HIS A 118 -1 O VAL A 113 N ALA A 106 SHEET 4 B 6 ILE A 157 THR A 163 1 O ILE A 158 N MET A 114 SHEET 5 B 6 VAL A 195 GLY A 204 1 O GLU A 202 N THR A 163 SHEET 6 B 6 THR A 224 SER A 226 1 O SER A 226 N GLY A 203 SHEET 1 C 2 TRP B 24 THR B 25 0 SHEET 2 C 2 LEU B 34 TYR B 35 -1 O LEU B 34 N THR B 25 SHEET 1 D 3 VAL B 71 GLU B 72 0 SHEET 2 D 3 LEU B 108 LYS B 112 -1 O LYS B 112 N VAL B 71 SHEET 3 D 3 ALA B 122 PHE B 125 -1 O ALA B 122 N MET B 111 SHEET 1 E 2 THR B 114 LEU B 115 0 SHEET 2 E 2 MET B 118 PRO B 119 -1 O MET B 118 N LEU B 115 SHEET 1 F 3 LEU B 156 SER B 162 0 SHEET 2 F 3 TYR B 194 MET B 203 1 O VAL B 197 N CYS B 158 SHEET 3 F 3 ILE B 225 GLY B 226 1 O GLY B 226 N THR B 202 SHEET 1 G 4 LEU B 156 SER B 162 0 SHEET 2 G 4 TYR B 194 MET B 203 1 O VAL B 197 N CYS B 158 SHEET 3 G 4 LEU B 216 ALA B 219 1 O ILE B 218 N SER B 196 SHEET 4 G 4 MET B 259 ILE B 260 1 O MET B 259 N ALA B 219 SSBOND 1 CYS B 46 CYS B 49 1555 1555 2.05 LINK SG CYS B 27 ZN ZN B 305 1555 1555 2.93 LINK SG CYS B 30 ZN ZN B 305 1555 1555 2.57 LINK SG CYS B 46 ZN ZN B 305 1555 1555 2.16 LINK SG CYS B 49 ZN ZN B 305 1555 1555 1.71 CISPEP 1 ASP B 200 PRO B 201 0 -0.08 SITE 1 AC1 4 CYS B 27 CYS B 30 CYS B 46 CYS B 49 CRYST1 156.729 156.728 192.824 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006380 0.003684 0.000000 0.00000 SCALE2 0.000000 0.007368 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005186 0.00000