HEADER TRANSFERASE 06-DEC-05 2FA0 TITLE HMG-COA SYNTHASE FROM BRASSICA JUNCEA IN COMPLEX WITH HMG-COA AND TITLE 2 COVALENTLY BOUND TO HMG-COA COMPND MOL_ID: 1; COMPND 2 MOLECULE: HMG-COA SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRASSICA JUNCEA; SOURCE 3 ORGANISM_TAXID: 3707; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PHIS8 KEYWDS HMGS1, HMG-COA, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.POJER,J.L.FERRER,S.B.RICHARD,J.P.NOEL REVDAT 6 25-DEC-24 2FA0 1 REMARK LINK REVDAT 5 13-JUL-11 2FA0 1 VERSN REVDAT 4 24-FEB-09 2FA0 1 VERSN REVDAT 3 15-AUG-06 2FA0 1 JRNL REVDAT 2 08-AUG-06 2FA0 1 TITLE REVDAT 1 25-JUL-06 2FA0 0 JRNL AUTH F.POJER,J.L.FERRER,S.B.RICHARD,D.A.NAGEGOWDA,M.L.CHYE, JRNL AUTH 2 T.J.BACH,J.P.NOEL JRNL TITL STRUCTURAL BASIS FOR THE DESIGN OF POTENT AND JRNL TITL 2 SPECIES-SPECIFIC INHIBITORS OF 3-HYDROXY-3-METHYLGLUTARYL JRNL TITL 3 COA SYNTHASES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 103 11491 2006 JRNL REFN ISSN 0027-8424 JRNL PMID 16864776 JRNL DOI 10.1073/PNAS.0604935103 REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 16104 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 864 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.49 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1033 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.4090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3510 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 99 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : 0.11000 REMARK 3 B33 (A**2) : -0.17000 REMARK 3 B12 (A**2) : 0.06000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.853 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.335 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.233 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.088 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.866 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3712 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5036 ; 2.297 ; 2.008 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 448 ; 8.367 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 155 ;39.632 ;24.516 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 622 ;21.983 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;20.338 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 547 ; 0.139 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2748 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1859 ; 0.263 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2488 ; 0.320 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 202 ; 0.183 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 103 ; 0.212 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.184 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2297 ; 0.916 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3585 ; 1.571 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1627 ; 2.473 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1448 ; 3.702 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 451 REMARK 3 RESIDUE RANGE : A 501 A 599 REMARK 3 ORIGIN FOR THE GROUP (A): 20.1836 7.1368 18.0573 REMARK 3 T TENSOR REMARK 3 T11: 0.0369 T22: 0.0063 REMARK 3 T33: -0.0125 T12: -0.0575 REMARK 3 T13: 0.0217 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 0.3424 L22: 0.2958 REMARK 3 L33: 0.3116 L12: 0.2448 REMARK 3 L13: -0.0785 L23: 0.0473 REMARK 3 S TENSOR REMARK 3 S11: -0.0932 S12: 0.0583 S13: -0.0097 REMARK 3 S21: -0.0959 S22: 0.1014 S23: -0.0475 REMARK 3 S31: 0.0217 S32: -0.0285 S33: -0.0083 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2FA0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1000035637. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979762 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NEMO REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16813 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.490 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 13.39 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.4600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.66900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.040 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17% PEG 20K, 0.25M TMAO, 100MM PIPES, REMARK 280 2MM DITHIOTHREITOL, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 137.18667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 274.37333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 205.78000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 342.96667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.59333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 137.18667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 274.37333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 342.96667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 205.78000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 68.59333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 8760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 68.59333 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 103 CB CYS A 103 SG 0.104 REMARK 500 CYS A 117 CB CYS A 117 SG -0.118 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 114 CB - CA - C ANGL. DEV. = -17.2 DEGREES REMARK 500 ASP A 218 CB - CG - OD1 ANGL. DEV. = 7.3 DEGREES REMARK 500 ASP A 218 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 LEU A 305 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 ARG A 413 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 32 -57.16 -20.10 REMARK 500 LYS A 69 71.37 43.83 REMARK 500 SER A 89 -37.09 -130.01 REMARK 500 GLU A 101 13.96 -62.82 REMARK 500 LYS A 102 -50.26 -146.76 REMARK 500 VAL A 111 -148.64 -132.18 REMARK 500 ASN A 115 103.80 -165.62 REMARK 500 GLU A 153 -58.19 -4.22 REMARK 500 ALA A 162 134.54 -172.26 REMARK 500 SER A 179 -39.59 -35.40 REMARK 500 TYR A 190 54.48 -117.04 REMARK 500 ASP A 205 64.70 -110.04 REMARK 500 LYS A 207 -70.37 -67.31 REMARK 500 LEU A 262 -56.63 -26.56 REMARK 500 LEU A 267 -37.41 -37.90 REMARK 500 VAL A 324 -43.19 -135.45 REMARK 500 TYR A 328 -123.46 42.02 REMARK 500 ALA A 348 123.26 -35.63 REMARK 500 GLU A 372 106.09 -43.11 REMARK 500 PHE A 377 63.71 -101.45 REMARK 500 GLU A 418 65.28 63.10 REMARK 500 ILE A 426 -51.45 -125.30 REMARK 500 TYR A 444 12.55 39.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 114 ASN A 115 142.22 REMARK 500 ALA A 149 VAL A 150 -148.91 REMARK 500 LYS A 450 LYS A 451 143.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 CYS A 117 -10.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HMG A 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2F82 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN THE APO-FORM REMARK 900 RELATED ID: 2F9A RELATED DB: PDB REMARK 900 THE SAME PROTEIN COVALENTLY BOUND WITH THE INHIBITOR F244. REMARK 900 RELATED ID: 2FA3 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH ACETYL-COA AND ACETYL-CYS117. DBREF 2FA0 A 2 451 UNP Q9M6U3 Q9M6U3_BRAJU 2 451 SEQRES 1 A 450 ALA LYS ASN VAL GLY ILE LEU ALA MET ASP ILE TYR PHE SEQRES 2 A 450 PRO PRO THR CYS VAL GLN GLN GLU ALA LEU GLU ALA HIS SEQRES 3 A 450 ASP GLY ALA SER LYS GLY LYS TYR THR ILE GLY LEU GLY SEQRES 4 A 450 GLN ASP CYS LEU ALA PHE CYS THR GLU LEU GLU ASP VAL SEQRES 5 A 450 ILE SER MET SER PHE ASN ALA VAL THR SER LEU LEU GLU SEQRES 6 A 450 LYS TYR LYS ILE ASP PRO LYS GLN ILE GLY ARG LEU GLU SEQRES 7 A 450 VAL GLY SER GLU THR VAL ILE ASP LYS SER LYS SER ILE SEQRES 8 A 450 LYS THR PHE LEU MET GLN LEU PHE GLU LYS CYS GLY ASN SEQRES 9 A 450 THR ASP VAL GLU GLY VAL ASP SER THR ASN ALA CYS TYR SEQRES 10 A 450 GLY GLY THR ALA ALA LEU LEU ASN CYS VAL ASN TRP VAL SEQRES 11 A 450 GLU SER ASN SER TRP ASP GLY ARG TYR GLY LEU VAL ILE SEQRES 12 A 450 CYS THR ASP SER ALA VAL TYR ALA GLU GLY PRO ALA ARG SEQRES 13 A 450 PRO THR GLY GLY ALA ALA ALA ILE ALA MET LEU ILE GLY SEQRES 14 A 450 PRO ASP ALA PRO ILE VAL PHE GLU SER LYS LEU ARG GLY SEQRES 15 A 450 SER HIS MET ALA HIS VAL TYR ASP PHE TYR LYS PRO ASN SEQRES 16 A 450 LEU ALA SER GLU TYR PRO VAL VAL ASP GLY LYS LEU SER SEQRES 17 A 450 GLN THR CYS TYR LEU MET ALA LEU ASP SER CYS TYR LYS SEQRES 18 A 450 HIS LEU CYS ASN LYS PHE GLU LYS LEU GLU GLY LYS GLU SEQRES 19 A 450 PHE SER ILE ASN ASP ALA ASP TYR PHE VAL PHE HIS SER SEQRES 20 A 450 PRO TYR ASN LYS LEU VAL GLN LYS SER PHE ALA ARG LEU SEQRES 21 A 450 LEU TYR ASN ASP PHE LEU ARG ASN ALA SER SER ILE ASP SEQRES 22 A 450 GLU ALA ALA LYS GLU LYS PHE THR PRO TYR SER SER LEU SEQRES 23 A 450 SER LEU ASP GLU SER TYR GLN SER ARG ASP LEU GLU LYS SEQRES 24 A 450 VAL SER GLN GLN LEU ALA LYS THR TYR TYR ASP ALA LYS SEQRES 25 A 450 VAL GLN PRO THR THR LEU VAL PRO LYS GLN VAL GLY ASN SEQRES 26 A 450 MET TYR THR ALA SER LEU TYR ALA ALA PHE ALA SER LEU SEQRES 27 A 450 VAL HIS ASN LYS HIS SER ASP LEU ALA GLY LYS ARG VAL SEQRES 28 A 450 VAL MET PHE SER TYR GLY SER GLY SER THR ALA THR MET SEQRES 29 A 450 PHE SER LEU ARG LEU CYS GLU ASN GLN SER PRO PHE SER SEQRES 30 A 450 LEU SER ASN ILE ALA SER VAL MET ASP VAL GLY GLY LYS SEQRES 31 A 450 LEU LYS ALA ARG HIS GLU TYR ALA PRO GLU LYS PHE VAL SEQRES 32 A 450 GLU THR MET LYS LEU MET GLU HIS ARG TYR GLY ALA LYS SEQRES 33 A 450 GLU PHE VAL THR SER LYS GLU GLY ILE LEU ASP LEU LEU SEQRES 34 A 450 ALA PRO GLY THR TYR TYR LEU LYS GLU VAL ASP SER LEU SEQRES 35 A 450 TYR ARG ARG PHE TYR GLY LYS LYS HET HMG A 500 116 HETNAM HMG 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A HETSYN HMG (S)-HMG-COA FORMUL 2 HMG C27 H39 N7 O20 P3 S 5- FORMUL 3 HOH *99(H2 O) HELIX 1 1 GLN A 21 GLY A 29 1 9 HELIX 2 2 ASP A 52 LYS A 69 1 18 HELIX 3 3 ASP A 71 LYS A 73 5 3 HELIX 4 4 SER A 91 MET A 97 1 7 HELIX 5 5 GLN A 98 GLU A 101 5 4 HELIX 6 6 ASN A 115 CYS A 117 5 3 HELIX 7 7 TYR A 118 GLU A 132 1 15 HELIX 8 8 ALA A 156 GLY A 160 5 5 HELIX 9 9 LYS A 207 GLY A 233 1 27 HELIX 10 10 SER A 237 ALA A 241 5 5 HELIX 11 11 TYR A 250 ARG A 268 1 19 HELIX 12 12 ASP A 274 THR A 282 1 9 HELIX 13 13 PRO A 283 LEU A 287 5 5 HELIX 14 14 SER A 288 TYR A 293 1 6 HELIX 15 15 SER A 295 VAL A 314 1 20 HELIX 16 16 GLN A 315 THR A 317 5 3 HELIX 17 17 THR A 318 GLY A 325 1 8 HELIX 18 18 MET A 327 THR A 329 5 3 HELIX 19 19 ALA A 330 HIS A 344 1 15 HELIX 20 20 SER A 378 ASP A 387 1 10 HELIX 21 21 ASP A 387 ALA A 394 1 8 HELIX 22 22 ALA A 399 TYR A 414 1 16 HELIX 23 23 ILE A 426 LEU A 430 5 5 SHEET 1 A 9 ASP A 112 SER A 113 0 SHEET 2 A 9 ILE A 75 GLY A 81 1 N VAL A 80 O SER A 113 SHEET 3 A 9 TYR A 140 ALA A 149 1 O ILE A 144 N GLY A 81 SHEET 4 A 9 GLY A 161 GLY A 170 -1 O GLY A 161 N ALA A 149 SHEET 5 A 9 GLY A 6 TYR A 13 -1 N ASP A 11 O ALA A 166 SHEET 6 A 9 ILE A 175 MET A 186 -1 O ILE A 175 N ILE A 7 SHEET 7 A 9 THR A 362 LEU A 370 -1 O ARG A 369 N VAL A 176 SHEET 8 A 9 ARG A 351 GLY A 358 -1 N SER A 356 O THR A 364 SHEET 9 A 9 TYR A 243 PHE A 246 1 N VAL A 245 O VAL A 353 SHEET 1 B 3 CYS A 43 ALA A 45 0 SHEET 2 B 3 THR A 17 GLN A 20 -1 N VAL A 19 O LEU A 44 SHEET 3 B 3 HIS A 396 GLU A 397 1 O HIS A 396 N CYS A 18 SHEET 1 C 2 PHE A 192 TYR A 193 0 SHEET 2 C 2 VAL A 203 VAL A 204 -1 O VAL A 203 N TYR A 193 SHEET 1 D 3 PHE A 419 VAL A 420 0 SHEET 2 D 3 TYR A 435 VAL A 440 -1 O VAL A 440 N PHE A 419 SHEET 3 D 3 ARG A 446 LYS A 450 -1 O PHE A 447 N LYS A 438 LINK SG CYS A 117 C5 AHMG A 500 1555 1555 1.67 CISPEP 1 GLY A 360 SER A 361 0 -16.62 CISPEP 2 SER A 375 PRO A 376 0 9.06 SITE 1 AC1 29 SER A 31 LYS A 32 GLY A 33 LYS A 34 SITE 2 AC1 29 ILE A 37 GLY A 38 GLU A 83 ALA A 116 SITE 3 AC1 29 CYS A 117 TYR A 151 PRO A 155 THR A 159 SITE 4 AC1 29 PHE A 192 VAL A 204 GLY A 206 SER A 209 SITE 5 AC1 29 TYR A 213 HIS A 247 PRO A 249 TYR A 250 SITE 6 AC1 29 LYS A 252 LEU A 253 LYS A 256 ASN A 326 SITE 7 AC1 29 TYR A 328 TYR A 357 GLY A 358 SER A 359 SITE 8 AC1 29 HOH A 599 CRYST1 61.330 61.330 411.560 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016305 0.009414 0.000000 0.00000 SCALE2 0.000000 0.018828 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002430 0.00000