HEADER TRANSCRIPTION 06-DEC-05 2FA1 TITLE CRYSTAL STRUCTURE OF PHNF C-TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE TRANSCRIPTIONAL REGULATOR PHNF; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: PHNF; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET15B KEYWDS PNHF, TRANSCRIPTION, REGULATOR, APC5558, EFFECTOR BINDING DOMAIN, KEYWDS 2 PSI, PROTEIN STRUCTURE INITIATIVE, MCSG, MIDWEST CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR V.V.LUNIN,B.P.NOCEK,M.GORELIK,T.SKARINA,A.M.EDWARDS,A.JOACHIMIAK, AUTHOR 2 A.SAVCHENKO,MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 6 14-FEB-24 2FA1 1 HETSYN REVDAT 5 29-JUL-20 2FA1 1 COMPND REMARK SEQADV HETNAM REVDAT 5 2 1 SITE REVDAT 4 05-OCT-11 2FA1 1 AUTHOR VERSN REVDAT 3 24-FEB-09 2FA1 1 VERSN REVDAT 2 23-MAY-06 2FA1 1 JRNL REVDAT 1 10-JAN-06 2FA1 0 JRNL AUTH M.GORELIK,V.V.LUNIN,T.SKARINA,A.SAVCHENKO JRNL TITL STRUCTURAL CHARACTERIZATION OF GNTR/HUTC FAMILY SIGNALING JRNL TITL 2 DOMAIN. JRNL REF PROTEIN SCI. V. 15 1 2006 JRNL REFN ISSN 0961-8368 JRNL PMID 16672238 JRNL DOI 10.1110/PS.062146906 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 31080 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1643 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2306 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2390 REMARK 3 BIN FREE R VALUE SET COUNT : 117 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2511 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 327 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.61000 REMARK 3 B22 (A**2) : 0.52000 REMARK 3 B33 (A**2) : -0.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.78000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.129 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.081 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.384 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2689 ; 0.025 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3656 ; 2.332 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 340 ; 7.214 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 135 ;35.209 ;22.519 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 473 ;15.458 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;22.506 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 411 ; 0.181 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2083 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1243 ; 0.235 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1823 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 274 ; 0.187 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 65 ; 0.361 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 27 ; 0.292 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1716 ; 1.681 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2690 ; 2.608 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1069 ; 3.631 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 966 ; 5.481 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2FA1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1000035638. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97944 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32745 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06800 REMARK 200 FOR THE DATA SET : 33.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.18300 REMARK 200 FOR SHELL : 2.750 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.2M MG FORMATE, 50MMTRIS REMARK 280 PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.78600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 82 REMARK 465 GLY B 82 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 83 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 174 O HOH A 339 2.09 REMARK 500 OXT HIS B 241 O HOH B 388 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD GLU A 219 O HOH B 367 2646 1.97 REMARK 500 OE1 GLU A 127 O HOH A 320 2646 1.98 REMARK 500 OE1 GLU A 219 O HOH B 367 2646 2.01 REMARK 500 OE2 GLU A 127 O HOH A 320 2646 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 225 CD1 TYR A 225 CE1 0.099 REMARK 500 CYS B 196 CB CYS B 196 SG -0.125 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 107 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 LEU A 107 CA - CB - CG ANGL. DEV. = 16.8 DEGREES REMARK 500 LEU A 107 CB - CG - CD2 ANGL. DEV. = 11.3 DEGREES REMARK 500 ARG A 111 NE - CZ - NH1 ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG A 111 NE - CZ - NH2 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 185 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 185 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 PRO A 222 C - N - CA ANGL. DEV. = -9.5 DEGREES REMARK 500 MET A 234 CG - SD - CE ANGL. DEV. = -10.4 DEGREES REMARK 500 ARG B 136 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 161 CD - NE - CZ ANGL. DEV. = 10.5 DEGREES REMARK 500 ARG B 161 NE - CZ - NH1 ANGL. DEV. = 9.5 DEGREES REMARK 500 ARG B 161 NE - CZ - NH2 ANGL. DEV. = -5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 163 -53.94 -120.23 REMARK 500 ALA A 193 -118.97 54.37 REMARK 500 ASP A 217 96.24 0.25 REMARK 500 ASP A 217 93.16 -1.99 REMARK 500 SER B 99 53.15 -159.76 REMARK 500 ALA B 193 -124.04 68.33 REMARK 500 ASP B 217 97.36 -54.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP B 217 GLY B 218 -149.48 REMARK 500 GLU B 219 SER B 220 140.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC5558 RELATED DB: TARGETDB DBREF 2FA1 A 85 241 UNP P16684 PHNF_ECOLI 85 241 DBREF 2FA1 B 85 241 UNP P16684 PHNF_ECOLI 85 241 SEQADV 2FA1 GLY A 82 UNP P16684 CLONING ARTIFACT SEQADV 2FA1 HIS A 83 UNP P16684 CLONING ARTIFACT SEQADV 2FA1 MET A 84 UNP P16684 CLONING ARTIFACT SEQADV 2FA1 GLY B 82 UNP P16684 CLONING ARTIFACT SEQADV 2FA1 HIS B 83 UNP P16684 CLONING ARTIFACT SEQADV 2FA1 MET B 84 UNP P16684 CLONING ARTIFACT SEQRES 1 A 160 GLY HIS MET ASN ALA GLN ALA ARG PHE SER GLN ASN LEU SEQRES 2 A 160 LEU ASP GLN GLY SER HIS PRO THR SER GLU LYS LEU LEU SEQRES 3 A 160 SER VAL LEU ARG PRO ALA SER GLY HIS VAL ALA ASP ALA SEQRES 4 A 160 LEU GLY ILE THR GLU GLY GLU ASN VAL ILE HIS LEU ARG SEQRES 5 A 160 THR LEU ARG ARG VAL ASN GLY VAL ALA LEU CYS LEU ILE SEQRES 6 A 160 ASP HIS TYR PHE ALA ASP LEU THR LEU TRP PRO THR LEU SEQRES 7 A 160 GLN ARG PHE ASP SER GLY SER LEU HIS ASP PHE LEU ARG SEQRES 8 A 160 GLU GLN THR GLY ILE ALA LEU ARG ARG SER GLN THR ARG SEQRES 9 A 160 ILE SER ALA ARG ARG ALA GLN ALA LYS GLU CYS GLN ARG SEQRES 10 A 160 LEU GLU ILE PRO ASN MET SER PRO LEU LEU CYS VAL ARG SEQRES 11 A 160 THR LEU ASN HIS ARG ASP GLY GLU SER SER PRO ALA GLU SEQRES 12 A 160 TYR SER VAL SER LEU THR ARG ALA ASP MET ILE GLU PHE SEQRES 13 A 160 THR MET GLU HIS SEQRES 1 B 160 GLY HIS MET ASN ALA GLN ALA ARG PHE SER GLN ASN LEU SEQRES 2 B 160 LEU ASP GLN GLY SER HIS PRO THR SER GLU LYS LEU LEU SEQRES 3 B 160 SER VAL LEU ARG PRO ALA SER GLY HIS VAL ALA ASP ALA SEQRES 4 B 160 LEU GLY ILE THR GLU GLY GLU ASN VAL ILE HIS LEU ARG SEQRES 5 B 160 THR LEU ARG ARG VAL ASN GLY VAL ALA LEU CYS LEU ILE SEQRES 6 B 160 ASP HIS TYR PHE ALA ASP LEU THR LEU TRP PRO THR LEU SEQRES 7 B 160 GLN ARG PHE ASP SER GLY SER LEU HIS ASP PHE LEU ARG SEQRES 8 B 160 GLU GLN THR GLY ILE ALA LEU ARG ARG SER GLN THR ARG SEQRES 9 B 160 ILE SER ALA ARG ARG ALA GLN ALA LYS GLU CYS GLN ARG SEQRES 10 B 160 LEU GLU ILE PRO ASN MET SER PRO LEU LEU CYS VAL ARG SEQRES 11 B 160 THR LEU ASN HIS ARG ASP GLY GLU SER SER PRO ALA GLU SEQRES 12 B 160 TYR SER VAL SER LEU THR ARG ALA ASP MET ILE GLU PHE SEQRES 13 B 160 THR MET GLU HIS HET BDF B 1 12 HETNAM BDF BETA-D-FRUCTOPYRANOSE HETSYN BDF BETA-D-FRUCTOSE; D-FRUCTOSE; FRUCTOSE FORMUL 3 BDF C6 H12 O6 FORMUL 4 HOH *327(H2 O) HELIX 1 1 SER A 114 GLY A 122 1 9 HELIX 2 2 ASP A 152 THR A 154 5 3 HELIX 3 3 LEU A 155 GLN A 160 1 6 HELIX 4 4 SER A 166 GLY A 176 1 11 HELIX 5 5 ALA A 193 GLU A 200 1 8 HELIX 6 6 ASP B 96 HIS B 100 5 5 HELIX 7 7 SER B 114 GLY B 122 1 9 HELIX 8 8 ASP B 152 THR B 154 5 3 HELIX 9 9 LEU B 155 GLN B 160 1 6 HELIX 10 10 SER B 166 GLY B 176 1 11 HELIX 11 11 ALA B 193 GLU B 200 1 8 SHEET 1 A 8 PHE A 90 ASN A 93 0 SHEET 2 A 8 ILE A 235 GLU A 240 1 O GLU A 236 N GLN A 92 SHEET 3 A 8 LEU B 179 ARG B 190 -1 O ILE B 186 N PHE A 237 SHEET 4 A 8 PRO B 206 ARG B 216 -1 O LEU B 213 N SER B 182 SHEET 5 A 8 GLU B 224 ARG B 231 -1 O SER B 228 N VAL B 210 SHEET 6 A 8 VAL B 141 PHE B 150 -1 N LEU B 145 O LEU B 229 SHEET 7 A 8 ASN B 128 VAL B 138 -1 N LEU B 132 O HIS B 148 SHEET 8 A 8 GLU B 104 PRO B 112 -1 N LEU B 106 O ARG B 133 SHEET 1 B 8 GLU A 104 PRO A 112 0 SHEET 2 B 8 ASN A 128 VAL A 138 -1 O ARG A 133 N LEU A 106 SHEET 3 B 8 VAL A 141 PHE A 150 -1 O HIS A 148 N LEU A 132 SHEET 4 B 8 GLU A 224 ARG A 231 -1 O LEU A 229 N LEU A 145 SHEET 5 B 8 PRO A 206 ARG A 216 -1 N VAL A 210 O SER A 228 SHEET 6 B 8 LEU A 179 ARG A 190 -1 N SER A 182 O LEU A 213 SHEET 7 B 8 ILE B 235 GLU B 240 -1 O PHE B 237 N ILE A 186 SHEET 8 B 8 PHE B 90 ASN B 93 1 N GLN B 92 O THR B 238 CRYST1 46.765 51.572 63.961 90.00 103.64 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021384 0.000000 0.005190 0.00000 SCALE2 0.000000 0.019390 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016088 0.00000