HEADER LIGASE 13-DEC-05 2FD4 TITLE CRYSTAL STRUCTURE OF AVRPTOB (436-553) COMPND MOL_ID: 1; COMPND 2 MOLECULE: AVIRULENCE PROTEIN AVRPTOB; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN, RESIDUES 436-553; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SYRINGAE; SOURCE 3 ORGANISM_TAXID: 317; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX4T3 KEYWDS PSEUDOMONAS, AVRPTOB, RING FINGER, U-BOX, UBIQUITIN LIGASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR R.JANJUSEVIC,C.E.STEBBINS REVDAT 6 14-FEB-24 2FD4 1 SEQADV REVDAT 5 18-OCT-17 2FD4 1 REMARK REVDAT 4 13-JUL-11 2FD4 1 VERSN REVDAT 3 24-FEB-09 2FD4 1 VERSN REVDAT 2 24-JAN-06 2FD4 1 JRNL REVDAT 1 27-DEC-05 2FD4 0 JRNL AUTH R.JANJUSEVIC,R.B.ABRAMOVITCH,G.B.MARTIN,C.E.STEBBINS JRNL TITL A BACTERIAL INHIBITOR OF HOST PROGRAMMED CELL DEATH DEFENSES JRNL TITL 2 IS AN E3 UBIQUITIN LIGASE. JRNL REF SCIENCE V. 311 222 2006 JRNL REFN ISSN 0036-8075 JRNL PMID 16373536 JRNL DOI 10.1126/SCIENCE.1120131 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 12049 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.243 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 637 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 880 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3140 REMARK 3 BIN FREE R VALUE SET COUNT : 42 REMARK 3 BIN FREE R VALUE : 0.2240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 801 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 51 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.92000 REMARK 3 B22 (A**2) : 1.92000 REMARK 3 B33 (A**2) : -2.88000 REMARK 3 B12 (A**2) : 0.96000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.140 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.130 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.122 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.825 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 814 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 742 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1097 ; 1.794 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1737 ; 0.894 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 101 ; 8.912 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 35 ;41.213 ;25.429 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 139 ;14.338 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ; 6.097 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 125 ; 0.122 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 887 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 148 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 159 ; 0.239 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 736 ; 0.196 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 380 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 507 ; 0.094 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 42 ; 0.178 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.092 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 31 ; 0.203 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.170 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 656 ; 1.147 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 211 ; 0.293 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 832 ; 1.370 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 327 ; 2.450 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 265 ; 3.525 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 435 A 454 REMARK 3 ORIGIN FOR THE GROUP (A): 31.4506 3.8988 8.2231 REMARK 3 T TENSOR REMARK 3 T11: -0.2210 T22: -0.2044 REMARK 3 T33: -0.1242 T12: 0.0113 REMARK 3 T13: -0.0043 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 1.6110 L22: 7.6505 REMARK 3 L33: 15.4869 L12: -0.6124 REMARK 3 L13: -0.7367 L23: 1.3278 REMARK 3 S TENSOR REMARK 3 S11: -0.1684 S12: -0.1642 S13: 0.0710 REMARK 3 S21: 0.1497 S22: 0.6088 S23: -0.5849 REMARK 3 S31: 0.1423 S32: -0.2376 S33: -0.4404 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 461 A 467 REMARK 3 ORIGIN FOR THE GROUP (A): 46.2378 3.5153 -3.8780 REMARK 3 T TENSOR REMARK 3 T11: 0.1068 T22: 0.0903 REMARK 3 T33: 0.3660 T12: 0.0415 REMARK 3 T13: 0.3286 T23: 0.0401 REMARK 3 L TENSOR REMARK 3 L11: 39.1359 L22: 11.6988 REMARK 3 L33: 45.5436 L12: -3.3871 REMARK 3 L13: 24.4867 L23: 4.5440 REMARK 3 S TENSOR REMARK 3 S11: 0.2988 S12: 1.5799 S13: 0.8450 REMARK 3 S21: -1.2903 S22: -0.0990 S23: -1.1419 REMARK 3 S31: 0.9809 S32: 3.6556 S33: -0.1998 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 472 A 507 REMARK 3 ORIGIN FOR THE GROUP (A): 38.0592 6.2247 -0.8922 REMARK 3 T TENSOR REMARK 3 T11: -0.1486 T22: -0.1915 REMARK 3 T33: -0.0344 T12: -0.0112 REMARK 3 T13: 0.0755 T23: -0.0732 REMARK 3 L TENSOR REMARK 3 L11: 4.9291 L22: 7.2210 REMARK 3 L33: 9.1930 L12: 0.3747 REMARK 3 L13: 2.8309 L23: -2.4817 REMARK 3 S TENSOR REMARK 3 S11: -0.0647 S12: 0.2081 S13: -0.5116 REMARK 3 S21: -0.2928 S22: 0.2531 S23: -0.8006 REMARK 3 S31: 0.3995 S32: 0.3931 S33: -0.1885 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 513 A 553 REMARK 3 ORIGIN FOR THE GROUP (A): 30.8716 10.9329 0.1969 REMARK 3 T TENSOR REMARK 3 T11: -0.1770 T22: -0.1740 REMARK 3 T33: -0.1974 T12: -0.0522 REMARK 3 T13: -0.0007 T23: -0.0252 REMARK 3 L TENSOR REMARK 3 L11: 3.5991 L22: 7.6642 REMARK 3 L33: 7.6723 L12: -0.9998 REMARK 3 L13: -0.0569 L23: -1.7323 REMARK 3 S TENSOR REMARK 3 S11: -0.3595 S12: 0.0763 S13: -0.0775 REMARK 3 S21: -0.2516 S22: 0.5100 S23: -0.2532 REMARK 3 S31: -0.1990 S32: -0.5738 S33: -0.1505 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2FD4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1000035733. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-OCT-04 REMARK 200 TEMPERATURE (KELVIN) : 103 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X9A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR. REMARK 200 SI(111) OR SI(220) OPTIONS. REMARK 200 SAGITALL FOCUSING. CYLINDRICALLY REMARK 200 BENT ULE MIRROR WITH PT AND RH REMARK 200 COATING. REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15065 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.03000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.67400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE 2.08, RESOLVE 2.08 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.37 M-1.39 M SODIUM CITRATE, 100 MM REMARK 280 HEPES, 2 MM DTT, PH 6.8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.27933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 20.13967 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 20.13967 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 40.27933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 433 REMARK 465 PRO A 434 REMARK 465 ASP A 455 REMARK 465 ALA A 456 REMARK 465 GLU A 457 REMARK 465 SER A 458 REMARK 465 GLU A 459 REMARK 465 GLU A 460 REMARK 465 ASP A 468 REMARK 465 HIS A 469 REMARK 465 HIS A 470 REMARK 465 THR A 471 REMARK 465 GLN A 508 REMARK 465 GLU A 509 REMARK 465 GLY A 510 REMARK 465 ASN A 511 REMARK 465 LYS A 512 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA A 467 C ALA A 467 O 0.114 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 473 1.36 80.15 REMARK 500 THR A 502 94.18 -57.75 REMARK 500 SER A 503 60.00 87.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 503 GLN A 504 122.81 REMARK 500 REMARK 500 REMARK: NULL DBREF 2FD4 A 436 553 UNP Q8RSY1 Q8RSY1_PSESM 436 553 SEQADV 2FD4 GLY A 433 UNP Q8RSY1 CLONING ARTIFACT SEQADV 2FD4 PRO A 434 UNP Q8RSY1 CLONING ARTIFACT SEQADV 2FD4 LYS A 435A UNP Q8RSY1 CLONING ARTIFACT SEQADV 2FD4 LEU A 435 UNP Q8RSY1 CLONING ARTIFACT SEQRES 1 A 122 GLY PRO LYS LEU ALA ALA LEU ASP PRO ILE ALA SER GLN SEQRES 2 A 122 PHE SER GLN LEU ARG THR ILE SER LYS ALA ASP ALA GLU SEQRES 3 A 122 SER GLU GLU LEU GLY PHE LYS ASP ALA ALA ASP HIS HIS SEQRES 4 A 122 THR ASP ASP VAL THR HIS CYS LEU PHE GLY GLY GLU LEU SEQRES 5 A 122 SER LEU SER ASN PRO ASP GLN GLN VAL ILE GLY LEU ALA SEQRES 6 A 122 GLY ASN PRO THR ASP THR SER GLN PRO TYR SER GLN GLU SEQRES 7 A 122 GLY ASN LYS ASP LEU ALA PHE MET ASP MET LYS LYS LEU SEQRES 8 A 122 ALA GLN PHE LEU ALA GLY LYS PRO GLU HIS PRO MET THR SEQRES 9 A 122 ARG GLU THR LEU ASN ALA GLU ASN ILE ALA LYS TYR ALA SEQRES 10 A 122 PHE ARG ILE VAL PRO FORMUL 2 HOH *51(H2 O) HELIX 1 1 ILE A 441 LEU A 448 5 8 HELIX 2 2 MET A 519 LYS A 529 1 11 HELIX 3 3 ASN A 543 TYR A 547 1 5 SHEET 1 A 4 ARG A 449 SER A 452 0 SHEET 2 A 4 ALA A 548 VAL A 552 1 O ARG A 550 N ARG A 449 SHEET 3 A 4 VAL A 492 ALA A 496 -1 N GLY A 494 O PHE A 549 SHEET 4 A 4 LEU A 514 ASP A 518 -1 O ALA A 515 N LEU A 495 CRYST1 61.863 61.863 60.419 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016160 0.009330 0.000000 0.00000 SCALE2 0.000000 0.018670 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016550 0.00000