HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 14-DEC-05 2FDS TITLE CRYSTAL STRUCTURE OF PLASMODIUM BERGHEI OROTIDINE 5'-MONOPHOSPHATE TITLE 2 DECARBOXYLASE (ORTHOLOG OF PLASMODIUM FALCIPARUM PF10_0225) COMPND MOL_ID: 1; COMPND 2 MOLECULE: OROTIDINE-MONOPHOSPHATE-DECARBOXYLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM BERGHEI; SOURCE 3 ORGANISM_TAXID: 5821; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS TIM BARREL, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 2 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR W.QIU,A.DONG,G.WASNEY,M.VEDADI,J.LEW,I.KOZIERADSKI,Z.ALAM,M.MELONE, AUTHOR 2 J.WEIGELT,M.SUNDSTROM,A.EDWARDS,C.ARROWSMITH,R.HUI,M.GAO, AUTHOR 3 A.BOCHKAREV,J.D.ARTZ,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 7 30-AUG-23 2FDS 1 REMARK SEQADV REVDAT 6 18-OCT-17 2FDS 1 REMARK REVDAT 5 24-FEB-09 2FDS 1 VERSN REVDAT 4 26-DEC-06 2FDS 1 JRNL REVDAT 3 10-OCT-06 2FDS 1 AUTHOR REVDAT 2 10-JAN-06 2FDS 1 AUTHOR REVDAT 1 20-DEC-05 2FDS 0 JRNL AUTH M.VEDADI,J.LEW,J.ARTZ,M.AMANI,Y.ZHAO,A.DONG,G.A.WASNEY, JRNL AUTH 2 M.GAO,T.HILLS,S.BROKX,W.QIU,S.SHARMA,A.DIASSITI,Z.ALAM, JRNL AUTH 3 M.MELONE,A.MULICHAK,A.WERNIMONT,J.BRAY,P.LOPPNAU, JRNL AUTH 4 O.PLOTNIKOVA,K.NEWBERRY,E.SUNDARARAJAN,S.HOUSTON,J.WALKER, JRNL AUTH 5 W.TEMPEL,A.BOCHKAREV,I.KOZIERADZKI,A.EDWARDS,C.ARROWSMITH, JRNL AUTH 6 D.ROOS,K.KAIN,R.HUI JRNL TITL GENOME-SCALE PROTEIN EXPRESSION AND STRUCTURAL BIOLOGY OF JRNL TITL 2 PLASMODIUM FALCIPARUM AND RELATED APICOMPLEXAN ORGANISMS. JRNL REF MOL.BIOCHEM.PARASITOL. V. 151 100 2007 JRNL REFN ISSN 0166-6851 JRNL PMID 17125854 JRNL DOI 10.1016/J.MOLBIOPARA.2006.10.011 REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 3 NUMBER OF REFLECTIONS : 65422 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3308 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.72 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.76 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2978 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 61.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.4090 REMARK 3 BIN FREE R VALUE SET COUNT : 148 REMARK 3 BIN FREE R VALUE : 0.5580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5274 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 328 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.128 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.079 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.398 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5537 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7475 ; 1.314 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 671 ; 5.715 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 295 ;38.674 ;25.864 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1050 ;13.629 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;17.932 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 796 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4246 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2879 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3980 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 382 ; 0.135 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 47 ; 0.181 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.092 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3325 ; 1.276 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5371 ; 2.034 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2426 ; 1.374 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2104 ; 2.028 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2FDS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1000035756. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65456 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 67.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.38200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY: 2AQW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG3350, 140MM DIAMMONIUM HYDROGEN REMARK 280 CITRATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 54.31150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 SER A -8 REMARK 465 SER A -7 REMARK 465 GLY A -6 REMARK 465 LEU A -5 REMARK 465 VAL A -4 REMARK 465 PRO A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 SER A 49 REMARK 465 GLY A 269 REMARK 465 ALA A 270 REMARK 465 GLN A 271 REMARK 465 ASN A 272 REMARK 465 GLY A 273 REMARK 465 GLY A 325 REMARK 465 GLY A 326 REMARK 465 ASN A 327 REMARK 465 ILE A 328 REMARK 465 GLU A 329 REMARK 465 GLN A 330 REMARK 465 VAL A 331 REMARK 465 TYR A 332 REMARK 465 LEU A 333 REMARK 465 MET B -18 REMARK 465 GLY B -17 REMARK 465 SER B -16 REMARK 465 SER B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 SER B -8 REMARK 465 SER B -7 REMARK 465 GLY B -6 REMARK 465 LEU B -5 REMARK 465 VAL B -4 REMARK 465 PRO B -3 REMARK 465 ARG B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 GLY B 269 REMARK 465 ALA B 270 REMARK 465 GLN B 271 REMARK 465 ASN B 272 REMARK 465 GLY B 273 REMARK 465 GLY B 325 REMARK 465 GLY B 326 REMARK 465 ASN B 327 REMARK 465 ILE B 328 REMARK 465 GLU B 329 REMARK 465 GLN B 330 REMARK 465 VAL B 331 REMARK 465 TYR B 332 REMARK 465 LEU B 333 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASN A 14 ND2 REMARK 480 LYS A 29 CD CE NZ REMARK 480 GLU A 73 CB CG CD OE1 OE2 REMARK 480 LYS A 199 CE NZ REMARK 480 LYS B 37 NZ REMARK 480 LYS B 62 CE NZ REMARK 480 LYS B 80 NZ REMARK 480 LYS B 176 CD CE NZ REMARK 480 LYS B 186 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 221 NZ LYS A 257 2.12 REMARK 500 NZ LYS B 184 O HOH B 1165 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 51 87.81 -57.42 REMARK 500 ASN A 211 -113.95 44.16 REMARK 500 ALA A 247 58.77 -107.65 REMARK 500 SER B 49 -80.02 -106.56 REMARK 500 ASN B 50 14.65 90.58 REMARK 500 ASN B 51 -5.66 64.11 REMARK 500 ASP B 143 -175.97 -172.88 REMARK 500 ALA B 247 63.75 -102.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER B 49 ASN B 50 35.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2AQW RELATED DB: PDB REMARK 900 THE SAME PROTEIN FROM PLASMODIUM YOELII. DBREF 2FDS A 1 333 UNP Q4Z4C3 Q4Z4C3_PLABE 2 334 DBREF 2FDS B 1 333 UNP Q4Z4C3 Q4Z4C3_PLABE 2 334 SEQADV 2FDS MET A -18 UNP Q4Z4C3 CLONING ARTIFACT SEQADV 2FDS GLY A -17 UNP Q4Z4C3 CLONING ARTIFACT SEQADV 2FDS SER A -16 UNP Q4Z4C3 CLONING ARTIFACT SEQADV 2FDS SER A -15 UNP Q4Z4C3 CLONING ARTIFACT SEQADV 2FDS HIS A -14 UNP Q4Z4C3 EXPRESSION TAG SEQADV 2FDS HIS A -13 UNP Q4Z4C3 EXPRESSION TAG SEQADV 2FDS HIS A -12 UNP Q4Z4C3 EXPRESSION TAG SEQADV 2FDS HIS A -11 UNP Q4Z4C3 EXPRESSION TAG SEQADV 2FDS HIS A -10 UNP Q4Z4C3 EXPRESSION TAG SEQADV 2FDS HIS A -9 UNP Q4Z4C3 EXPRESSION TAG SEQADV 2FDS SER A -8 UNP Q4Z4C3 CLONING ARTIFACT SEQADV 2FDS SER A -7 UNP Q4Z4C3 CLONING ARTIFACT SEQADV 2FDS GLY A -6 UNP Q4Z4C3 CLONING ARTIFACT SEQADV 2FDS LEU A -5 UNP Q4Z4C3 CLONING ARTIFACT SEQADV 2FDS VAL A -4 UNP Q4Z4C3 CLONING ARTIFACT SEQADV 2FDS PRO A -3 UNP Q4Z4C3 CLONING ARTIFACT SEQADV 2FDS ARG A -2 UNP Q4Z4C3 CLONING ARTIFACT SEQADV 2FDS GLY A -1 UNP Q4Z4C3 CLONING ARTIFACT SEQADV 2FDS SER A 0 UNP Q4Z4C3 CLONING ARTIFACT SEQADV 2FDS MET B -18 UNP Q4Z4C3 CLONING ARTIFACT SEQADV 2FDS GLY B -17 UNP Q4Z4C3 CLONING ARTIFACT SEQADV 2FDS SER B -16 UNP Q4Z4C3 CLONING ARTIFACT SEQADV 2FDS SER B -15 UNP Q4Z4C3 CLONING ARTIFACT SEQADV 2FDS HIS B -14 UNP Q4Z4C3 EXPRESSION TAG SEQADV 2FDS HIS B -13 UNP Q4Z4C3 EXPRESSION TAG SEQADV 2FDS HIS B -12 UNP Q4Z4C3 EXPRESSION TAG SEQADV 2FDS HIS B -11 UNP Q4Z4C3 EXPRESSION TAG SEQADV 2FDS HIS B -10 UNP Q4Z4C3 EXPRESSION TAG SEQADV 2FDS HIS B -9 UNP Q4Z4C3 EXPRESSION TAG SEQADV 2FDS SER B -8 UNP Q4Z4C3 CLONING ARTIFACT SEQADV 2FDS SER B -7 UNP Q4Z4C3 CLONING ARTIFACT SEQADV 2FDS GLY B -6 UNP Q4Z4C3 CLONING ARTIFACT SEQADV 2FDS LEU B -5 UNP Q4Z4C3 CLONING ARTIFACT SEQADV 2FDS VAL B -4 UNP Q4Z4C3 CLONING ARTIFACT SEQADV 2FDS PRO B -3 UNP Q4Z4C3 CLONING ARTIFACT SEQADV 2FDS ARG B -2 UNP Q4Z4C3 CLONING ARTIFACT SEQADV 2FDS GLY B -1 UNP Q4Z4C3 CLONING ARTIFACT SEQADV 2FDS SER B 0 UNP Q4Z4C3 CLONING ARTIFACT SEQRES 1 A 352 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 352 LEU VAL PRO ARG GLY SER HIS PHE LYS THR LYS LEU LYS SEQRES 3 A 352 ASN ARG ARG ASN GLU VAL ASN THR CYS LEU CYS ILE GLY SEQRES 4 A 352 LEU ASP PRO ASP GLU ASP ASP ILE LYS ASN PHE MET ARG SEQRES 5 A 352 ASN GLU GLU LYS ASN GLY TYR LYS ASN VAL LYS ASN ASN SEQRES 6 A 352 MET ASN SER ASN ASN ASN ARG ILE GLU ASN VAL ILE LYS SEQRES 7 A 352 ILE GLY LYS GLU ILE LEU LEU THR ASP GLU GLU ASN ILE SEQRES 8 A 352 GLU ASN LEU SER GLU GLU ASP LYS PHE PHE TYR PHE PHE SEQRES 9 A 352 ASN HIS PHE CYS PHE TYR ILE ILE ASN ASN THR LYS GLU SEQRES 10 A 352 TYR ALA LEU ILE TYR LYS MET ASN PHE ALA PHE TYR ILE SEQRES 11 A 352 PRO TYR GLY SER VAL GLY ILE ASN ALA LEU LYS ASN VAL SEQRES 12 A 352 PHE ASP TYR LEU ASN SER MET ASN ILE PRO THR MET LEU SEQRES 13 A 352 ASP MET LYS ILE ASN ASP ILE GLY ASN THR VAL LYS ASN SEQRES 14 A 352 TYR ARG LYS PHE ILE PHE GLU TYR LEU LYS SER ASP SER SEQRES 15 A 352 CYS THR ILE ASN VAL TYR MET GLY THR SER MET LEU LYS SEQRES 16 A 352 ASP ILE CYS PHE ASP TYR GLU LYS ASN LYS TYR TYR SER SEQRES 17 A 352 ALA TYR VAL LEU ILE LYS THR THR ASN LYS ASP SER PHE SEQRES 18 A 352 ILE PHE GLN ASN GLU LEU SER ILE ASN ASP LYS GLN ALA SEQRES 19 A 352 TYR ILE VAL MET ALA GLU GLU THR GLN LYS MET ALA THR SEQRES 20 A 352 ASP LEU LYS ILE ASP GLN ASN ASN GLU PHE ILE GLY PHE SEQRES 21 A 352 VAL VAL GLY SER ASN ALA PHE GLU GLU MET LYS ILE ILE SEQRES 22 A 352 ARG ASN LYS PHE PRO ASP SER TYR ILE LEU SER PRO GLY SEQRES 23 A 352 ILE GLY ALA GLN ASN GLY ASP LEU TYR LYS THR LEU LYS SEQRES 24 A 352 ASN GLY TYR ASN LYS ASP TYR GLU LYS LEU LEU ILE ASN SEQRES 25 A 352 VAL GLY ARG ALA ILE THR LYS SER PRO ASN PRO LYS LYS SEQRES 26 A 352 SER SER GLU SER TYR TYR ASN GLN ILE ILE GLN ILE PHE SEQRES 27 A 352 LYS ASP ILE GLU ASN GLY GLY ASN ILE GLU GLN VAL TYR SEQRES 28 A 352 LEU SEQRES 1 B 352 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 352 LEU VAL PRO ARG GLY SER HIS PHE LYS THR LYS LEU LYS SEQRES 3 B 352 ASN ARG ARG ASN GLU VAL ASN THR CYS LEU CYS ILE GLY SEQRES 4 B 352 LEU ASP PRO ASP GLU ASP ASP ILE LYS ASN PHE MET ARG SEQRES 5 B 352 ASN GLU GLU LYS ASN GLY TYR LYS ASN VAL LYS ASN ASN SEQRES 6 B 352 MET ASN SER ASN ASN ASN ARG ILE GLU ASN VAL ILE LYS SEQRES 7 B 352 ILE GLY LYS GLU ILE LEU LEU THR ASP GLU GLU ASN ILE SEQRES 8 B 352 GLU ASN LEU SER GLU GLU ASP LYS PHE PHE TYR PHE PHE SEQRES 9 B 352 ASN HIS PHE CYS PHE TYR ILE ILE ASN ASN THR LYS GLU SEQRES 10 B 352 TYR ALA LEU ILE TYR LYS MET ASN PHE ALA PHE TYR ILE SEQRES 11 B 352 PRO TYR GLY SER VAL GLY ILE ASN ALA LEU LYS ASN VAL SEQRES 12 B 352 PHE ASP TYR LEU ASN SER MET ASN ILE PRO THR MET LEU SEQRES 13 B 352 ASP MET LYS ILE ASN ASP ILE GLY ASN THR VAL LYS ASN SEQRES 14 B 352 TYR ARG LYS PHE ILE PHE GLU TYR LEU LYS SER ASP SER SEQRES 15 B 352 CYS THR ILE ASN VAL TYR MET GLY THR SER MET LEU LYS SEQRES 16 B 352 ASP ILE CYS PHE ASP TYR GLU LYS ASN LYS TYR TYR SER SEQRES 17 B 352 ALA TYR VAL LEU ILE LYS THR THR ASN LYS ASP SER PHE SEQRES 18 B 352 ILE PHE GLN ASN GLU LEU SER ILE ASN ASP LYS GLN ALA SEQRES 19 B 352 TYR ILE VAL MET ALA GLU GLU THR GLN LYS MET ALA THR SEQRES 20 B 352 ASP LEU LYS ILE ASP GLN ASN ASN GLU PHE ILE GLY PHE SEQRES 21 B 352 VAL VAL GLY SER ASN ALA PHE GLU GLU MET LYS ILE ILE SEQRES 22 B 352 ARG ASN LYS PHE PRO ASP SER TYR ILE LEU SER PRO GLY SEQRES 23 B 352 ILE GLY ALA GLN ASN GLY ASP LEU TYR LYS THR LEU LYS SEQRES 24 B 352 ASN GLY TYR ASN LYS ASP TYR GLU LYS LEU LEU ILE ASN SEQRES 25 B 352 VAL GLY ARG ALA ILE THR LYS SER PRO ASN PRO LYS LYS SEQRES 26 B 352 SER SER GLU SER TYR TYR ASN GLN ILE ILE GLN ILE PHE SEQRES 27 B 352 LYS ASP ILE GLU ASN GLY GLY ASN ILE GLU GLN VAL TYR SEQRES 28 B 352 LEU HET IOD A1002 1 HET IOD B1001 1 HETNAM IOD IODIDE ION FORMUL 3 IOD 2(I 1-) FORMUL 5 HOH *328(H2 O) HELIX 1 1 HIS A 1 ASN A 14 1 14 HELIX 2 2 ASP A 24 GLU A 36 1 13 HELIX 3 3 TYR A 40 ASN A 48 1 9 HELIX 4 4 ASN A 52 ILE A 58 1 7 HELIX 5 5 GLY A 61 LEU A 66 1 6 HELIX 6 6 ASP A 68 LEU A 75 5 8 HELIX 7 7 SER A 76 LYS A 97 1 22 HELIX 8 8 GLU A 98 ALA A 100 5 3 HELIX 9 9 ALA A 108 TYR A 113 5 6 HELIX 10 10 GLY A 114 MET A 131 1 18 HELIX 11 11 ILE A 144 GLU A 157 1 14 HELIX 12 12 MET A 174 CYS A 179 1 6 HELIX 13 13 ASN A 198 ASP A 200 5 3 HELIX 14 14 SER A 201 ASN A 206 1 6 HELIX 15 15 ALA A 215 LYS A 231 1 17 HELIX 16 16 ILE A 232 ASN A 236 5 5 HELIX 17 17 ALA A 247 PHE A 258 1 12 HELIX 18 18 ASP A 274 TYR A 283 1 10 HELIX 19 19 ASP A 286 GLU A 288 5 3 HELIX 20 20 GLY A 295 LYS A 300 1 6 HELIX 21 21 ASN A 303 GLU A 323 1 21 HELIX 22 22 HIS B 1 ASN B 14 1 14 HELIX 23 23 ASP B 24 GLU B 36 1 13 HELIX 24 24 TYR B 40 SER B 49 1 10 HELIX 25 25 ASN B 52 ILE B 58 1 7 HELIX 26 26 GLY B 61 LEU B 66 1 6 HELIX 27 27 ASP B 68 LEU B 75 5 8 HELIX 28 28 SER B 76 LYS B 97 1 22 HELIX 29 29 GLU B 98 ALA B 100 5 3 HELIX 30 30 ALA B 108 TYR B 110 5 3 HELIX 31 31 GLY B 114 MET B 131 1 18 HELIX 32 32 ILE B 144 GLU B 157 1 14 HELIX 33 33 THR B 172 ILE B 178 5 7 HELIX 34 34 ASN B 198 ASP B 200 5 3 HELIX 35 35 SER B 201 ASN B 206 1 6 HELIX 36 36 ALA B 215 LYS B 231 1 17 HELIX 37 37 ILE B 232 ASN B 236 5 5 HELIX 38 38 ALA B 247 PHE B 258 1 12 HELIX 39 39 ASP B 274 TYR B 283 1 10 HELIX 40 40 ASP B 286 GLU B 288 5 3 HELIX 41 41 GLY B 295 LYS B 300 1 6 HELIX 42 42 ASN B 303 GLU B 323 1 21 SHEET 1 A 9 LEU A 17 LEU A 21 0 SHEET 2 A 9 ILE A 102 ASN A 106 1 O LYS A 104 N LEU A 21 SHEET 3 A 9 THR A 135 ILE A 141 1 O ASP A 138 N MET A 105 SHEET 4 A 9 SER A 163 ILE A 166 1 O SER A 163 N LEU A 137 SHEET 5 A 9 SER A 189 LYS A 195 1 O LEU A 193 N ILE A 166 SHEET 6 A 9 ILE A 239 VAL A 243 1 O GLY A 240 N ALA A 190 SHEET 7 A 9 ILE A 263 SER A 265 1 O LEU A 264 N PHE A 241 SHEET 8 A 9 LEU A 290 VAL A 294 1 O LEU A 291 N ILE A 263 SHEET 9 A 9 LEU A 17 LEU A 21 1 N CYS A 18 O ILE A 292 SHEET 1 B 2 PHE A 180 ASP A 181 0 SHEET 2 B 2 LYS A 186 TYR A 187 -1 O LYS A 186 N ASP A 181 SHEET 1 C 2 SER A 209 ILE A 210 0 SHEET 2 C 2 LYS A 213 GLN A 214 -1 O LYS A 213 N ILE A 210 SHEET 1 D 9 LEU B 17 GLY B 20 0 SHEET 2 D 9 ILE B 102 ASN B 106 1 O ILE B 102 N ILE B 19 SHEET 3 D 9 THR B 135 ILE B 141 1 O ASP B 138 N MET B 105 SHEET 4 D 9 SER B 163 ILE B 166 1 O SER B 163 N LEU B 137 SHEET 5 D 9 SER B 189 LYS B 195 1 O LEU B 193 N ILE B 166 SHEET 6 D 9 ILE B 239 VAL B 243 1 O GLY B 240 N ALA B 190 SHEET 7 D 9 ILE B 263 SER B 265 1 O LEU B 264 N PHE B 241 SHEET 8 D 9 LEU B 290 VAL B 294 1 O LEU B 291 N ILE B 263 SHEET 9 D 9 LEU B 17 GLY B 20 1 N CYS B 18 O VAL B 294 SHEET 1 E 2 PHE B 180 ASP B 181 0 SHEET 2 E 2 LYS B 186 TYR B 187 -1 O LYS B 186 N ASP B 181 SHEET 1 F 2 SER B 209 ILE B 210 0 SHEET 2 F 2 LYS B 213 GLN B 214 -1 O LYS B 213 N ILE B 210 CRYST1 44.202 108.623 69.890 90.00 97.30 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022620 0.000000 0.002900 0.00000 SCALE2 0.000000 0.009210 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014430 0.00000