HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 16-DEC-05 2FEX TITLE THE CRYSTAL STRUCTURE OF DJ-1 SUPERFAMILY PROTEIN ATU0886 FROM TITLE 2 AGROBACTERIUM TUMEFACIENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CONSERVED HYPOTHETICAL PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS; SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 STRAIN: C58; SOURCE 5 GENE: ATU0886; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, PSI, MIDWEST KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR M.T.CYMBOROWSKI,S.WANG,M.CHRUSZCZ,I.SHUMILIN,J.GU,X.XU,A.M.EDWARDS, AUTHOR 2 A.SAVCHENKO,A.JOACHIMIAK,W.MINOR,MIDWEST CENTER FOR STRUCTURAL AUTHOR 3 GENOMICS (MCSG) REVDAT 6 20-NOV-24 2FEX 1 REMARK REVDAT 5 13-APR-22 2FEX 1 AUTHOR JRNL REMARK LINK REVDAT 4 05-OCT-11 2FEX 1 AUTHOR REVDAT 3 13-JUL-11 2FEX 1 VERSN REVDAT 2 24-FEB-09 2FEX 1 VERSN REVDAT 1 31-JAN-06 2FEX 0 JRNL AUTH M.T.CYMBOROWSKI,S.WANG,M.CHRUSZCZ,I.SHUMILIN,J.GU,X.XU, JRNL AUTH 2 A.M.EDWARDS,A.SAVCHENKO,W.MINOR JRNL TITL THE CRYSTAL STRUCTURE OF DJ-1 SUPERFAMILY PROTEIN ATU0886 JRNL TITL 2 FROM AGROBACTERIUM TUMEFACIENS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 78.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 69187 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3659 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4900 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.02 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 245 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4091 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 681 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.43000 REMARK 3 B22 (A**2) : 0.43000 REMARK 3 B33 (A**2) : -0.86000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.090 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.092 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.086 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4374 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6003 ; 1.646 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 618 ; 5.323 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 175 ;33.476 ;23.314 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 659 ;12.426 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;23.144 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 690 ; 0.128 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3384 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2325 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2999 ; 0.314 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 504 ; 0.138 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 86 ; 0.194 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 38 ; 0.171 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2874 ; 0.989 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4585 ; 1.585 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1500 ; 2.822 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1389 ; 4.343 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 188 4 REMARK 3 1 B 1 B 188 4 REMARK 3 1 C 1 C 188 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1249 ; 0.25 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 1249 ; 0.29 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 C (A): 1249 ; 0.36 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1249 ; 1.24 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 1249 ; 1.51 ; 2.00 REMARK 3 MEDIUM THERMAL 1 C (A**2): 1249 ; 2.10 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 188 REMARK 3 ORIGIN FOR THE GROUP (A): 31.7780 51.3150 23.6440 REMARK 3 T TENSOR REMARK 3 T11: -0.0294 T22: -0.0364 REMARK 3 T33: -0.0577 T12: 0.0173 REMARK 3 T13: -0.0032 T23: -0.0218 REMARK 3 L TENSOR REMARK 3 L11: 0.8552 L22: 0.4564 REMARK 3 L33: 1.1983 L12: 0.3009 REMARK 3 L13: 0.0950 L23: 0.1940 REMARK 3 S TENSOR REMARK 3 S11: 0.0013 S12: 0.0036 S13: -0.0494 REMARK 3 S21: 0.0149 S22: 0.0193 S23: -0.0668 REMARK 3 S31: 0.0151 S32: 0.1034 S33: -0.0207 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 188 REMARK 3 ORIGIN FOR THE GROUP (A): 8.0370 44.6980 14.2230 REMARK 3 T TENSOR REMARK 3 T11: -0.0268 T22: -0.0304 REMARK 3 T33: -0.0610 T12: 0.0158 REMARK 3 T13: -0.0106 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 0.6885 L22: 0.4913 REMARK 3 L33: 0.9023 L12: 0.3408 REMARK 3 L13: 0.2692 L23: 0.2195 REMARK 3 S TENSOR REMARK 3 S11: -0.0165 S12: -0.0117 S13: 0.0690 REMARK 3 S21: -0.0244 S22: 0.0078 S23: 0.0825 REMARK 3 S31: -0.0380 S32: -0.0671 S33: 0.0087 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 188 REMARK 3 ORIGIN FOR THE GROUP (A): -8.9630 65.2980 -7.6330 REMARK 3 T TENSOR REMARK 3 T11: 0.0617 T22: -0.0180 REMARK 3 T33: -0.0055 T12: 0.0336 REMARK 3 T13: -0.0393 T23: 0.0200 REMARK 3 L TENSOR REMARK 3 L11: 1.3108 L22: 1.2954 REMARK 3 L33: 1.7505 L12: -0.3485 REMARK 3 L13: -0.0532 L23: 0.7999 REMARK 3 S TENSOR REMARK 3 S11: 0.1219 S12: 0.0809 S13: -0.0543 REMARK 3 S21: -0.1089 S22: -0.0043 S23: -0.0295 REMARK 3 S31: 0.1798 S32: 0.0169 S33: -0.1176 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2FEX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1000035796. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97910 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73282 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 78.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 19.00 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : 0.07700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 51.5710 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 9.80 REMARK 200 R MERGE FOR SHELL (I) : 0.57300 REMARK 200 R SYM FOR SHELL (I) : 0.50600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.463 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXD, MLPHARE, DM, SOLVE, RESOLVE, CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS 8.5, 1.5M (NH4)2SO4, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K, PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.74300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 44.70550 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 44.70550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.87150 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 44.70550 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 44.70550 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 122.61450 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 44.70550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.70550 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 40.87150 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 44.70550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.70550 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 122.61450 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 81.74300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 -89.41100 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 89.41100 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 188 NE CZ NH1 NH2 REMARK 470 ARG C 133 NE CZ NH1 NH2 REMARK 470 GLU C 175 CG CD OE1 OE2 REMARK 470 GLN C 181 OE1 NE2 REMARK 470 ARG C 188 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 101 -131.23 62.41 REMARK 500 CYS B 101 -137.09 67.75 REMARK 500 CYS C 101 -135.62 67.44 REMARK 500 PHE C 172 72.46 -104.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 2001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC5900 RELATED DB: TARGETDB DBREF 2FEX A 1 188 GB 17739264 AAL41900 1 188 DBREF 2FEX B 1 188 GB 17739264 AAL41900 1 188 DBREF 2FEX C 1 188 GB 17739264 AAL41900 1 188 SEQRES 1 A 188 MSE THR ARG ILE ALA ILE ALA LEU ALA GLN ASP PHE ALA SEQRES 2 A 188 ASP TRP GLU PRO ALA LEU LEU ALA ALA ALA ALA ARG SER SEQRES 3 A 188 TYR LEU GLY VAL GLU ILE VAL HIS ALA THR PRO ASP GLY SEQRES 4 A 188 MSE PRO VAL THR SER MSE GLY GLY LEU LYS VAL THR PRO SEQRES 5 A 188 ASP THR SER TYR ASP ALA LEU ASP PRO VAL ASP ILE ASP SEQRES 6 A 188 ALA LEU VAL ILE PRO GLY GLY LEU SER TRP GLU LYS GLY SEQRES 7 A 188 THR ALA ALA ASP LEU GLY GLY LEU VAL LYS ARG PHE ARG SEQRES 8 A 188 ASP ARG ASP ARG LEU VAL ALA GLY ILE CYS ALA ALA ALA SEQRES 9 A 188 SER ALA LEU GLY GLY THR GLY VAL LEU ASN ASP VAL ALA SEQRES 10 A 188 HIS THR GLY ASN ALA LEU ALA SER HIS LYS ALA TYR PRO SEQRES 11 A 188 ALA TYR ARG GLY GLU ALA HIS TYR ARG ASP GLN PRO ARG SEQRES 12 A 188 ALA VAL SER ASP GLY GLY VAL VAL THR ALA ALA GLY SER SEQRES 13 A 188 ALA PRO VAL SER PHE ALA VAL GLU ILE LEU LYS SER LEU SEQRES 14 A 188 GLY LEU PHE GLY PRO GLU ALA GLU ALA GLU LEU GLN ILE SEQRES 15 A 188 PHE ALA ALA GLU HIS ARG SEQRES 1 B 188 MSE THR ARG ILE ALA ILE ALA LEU ALA GLN ASP PHE ALA SEQRES 2 B 188 ASP TRP GLU PRO ALA LEU LEU ALA ALA ALA ALA ARG SER SEQRES 3 B 188 TYR LEU GLY VAL GLU ILE VAL HIS ALA THR PRO ASP GLY SEQRES 4 B 188 MSE PRO VAL THR SER MSE GLY GLY LEU LYS VAL THR PRO SEQRES 5 B 188 ASP THR SER TYR ASP ALA LEU ASP PRO VAL ASP ILE ASP SEQRES 6 B 188 ALA LEU VAL ILE PRO GLY GLY LEU SER TRP GLU LYS GLY SEQRES 7 B 188 THR ALA ALA ASP LEU GLY GLY LEU VAL LYS ARG PHE ARG SEQRES 8 B 188 ASP ARG ASP ARG LEU VAL ALA GLY ILE CYS ALA ALA ALA SEQRES 9 B 188 SER ALA LEU GLY GLY THR GLY VAL LEU ASN ASP VAL ALA SEQRES 10 B 188 HIS THR GLY ASN ALA LEU ALA SER HIS LYS ALA TYR PRO SEQRES 11 B 188 ALA TYR ARG GLY GLU ALA HIS TYR ARG ASP GLN PRO ARG SEQRES 12 B 188 ALA VAL SER ASP GLY GLY VAL VAL THR ALA ALA GLY SER SEQRES 13 B 188 ALA PRO VAL SER PHE ALA VAL GLU ILE LEU LYS SER LEU SEQRES 14 B 188 GLY LEU PHE GLY PRO GLU ALA GLU ALA GLU LEU GLN ILE SEQRES 15 B 188 PHE ALA ALA GLU HIS ARG SEQRES 1 C 188 MSE THR ARG ILE ALA ILE ALA LEU ALA GLN ASP PHE ALA SEQRES 2 C 188 ASP TRP GLU PRO ALA LEU LEU ALA ALA ALA ALA ARG SER SEQRES 3 C 188 TYR LEU GLY VAL GLU ILE VAL HIS ALA THR PRO ASP GLY SEQRES 4 C 188 MSE PRO VAL THR SER MSE GLY GLY LEU LYS VAL THR PRO SEQRES 5 C 188 ASP THR SER TYR ASP ALA LEU ASP PRO VAL ASP ILE ASP SEQRES 6 C 188 ALA LEU VAL ILE PRO GLY GLY LEU SER TRP GLU LYS GLY SEQRES 7 C 188 THR ALA ALA ASP LEU GLY GLY LEU VAL LYS ARG PHE ARG SEQRES 8 C 188 ASP ARG ASP ARG LEU VAL ALA GLY ILE CYS ALA ALA ALA SEQRES 9 C 188 SER ALA LEU GLY GLY THR GLY VAL LEU ASN ASP VAL ALA SEQRES 10 C 188 HIS THR GLY ASN ALA LEU ALA SER HIS LYS ALA TYR PRO SEQRES 11 C 188 ALA TYR ARG GLY GLU ALA HIS TYR ARG ASP GLN PRO ARG SEQRES 12 C 188 ALA VAL SER ASP GLY GLY VAL VAL THR ALA ALA GLY SER SEQRES 13 C 188 ALA PRO VAL SER PHE ALA VAL GLU ILE LEU LYS SER LEU SEQRES 14 C 188 GLY LEU PHE GLY PRO GLU ALA GLU ALA GLU LEU GLN ILE SEQRES 15 C 188 PHE ALA ALA GLU HIS ARG MODRES 2FEX MSE A 1 MET SELENOMETHIONINE MODRES 2FEX MSE A 40 MET SELENOMETHIONINE MODRES 2FEX MSE A 45 MET SELENOMETHIONINE MODRES 2FEX MSE B 1 MET SELENOMETHIONINE MODRES 2FEX MSE B 40 MET SELENOMETHIONINE MODRES 2FEX MSE B 45 MET SELENOMETHIONINE MODRES 2FEX MSE C 1 MET SELENOMETHIONINE MODRES 2FEX MSE C 40 MET SELENOMETHIONINE MODRES 2FEX MSE C 45 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 40 8 HET MSE A 45 8 HET MSE B 1 8 HET MSE B 40 8 HET MSE B 45 8 HET MSE C 1 8 HET MSE C 40 8 HET MSE C 45 8 HET SO4 B1001 5 HET GOL B2001 6 HET SO4 C1002 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 4 SO4 2(O4 S 2-) FORMUL 5 GOL C3 H8 O3 FORMUL 7 HOH *681(H2 O) HELIX 1 1 PRO A 17 LEU A 28 1 12 HELIX 2 2 ASP A 57 LEU A 59 5 3 HELIX 3 3 LEU A 83 ARG A 93 1 11 HELIX 4 4 CYS A 101 THR A 110 1 10 HELIX 5 5 ALA A 122 ALA A 128 1 7 HELIX 6 6 GLY A 134 TYR A 138 5 5 HELIX 7 7 ALA A 157 LEU A 169 1 13 HELIX 8 8 GLY A 173 GLN A 181 1 9 HELIX 9 9 ILE A 182 ARG A 188 5 7 HELIX 10 10 PRO B 17 LEU B 28 1 12 HELIX 11 11 ASP B 57 LEU B 59 5 3 HELIX 12 12 ASP B 60 ILE B 64 5 5 HELIX 13 13 LEU B 83 ARG B 93 1 11 HELIX 14 14 CYS B 101 THR B 110 1 10 HELIX 15 15 ALA B 122 ALA B 128 1 7 HELIX 16 16 GLY B 134 TYR B 138 5 5 HELIX 17 17 ALA B 157 LEU B 169 1 13 HELIX 18 18 GLY B 173 GLN B 181 1 9 HELIX 19 19 ILE B 182 ARG B 188 5 7 HELIX 20 20 PRO C 17 TYR C 27 1 11 HELIX 21 21 LEU C 83 ARG C 93 1 11 HELIX 22 22 CYS C 101 THR C 110 1 10 HELIX 23 23 ALA C 122 LYS C 127 1 6 HELIX 24 24 GLY C 134 TYR C 138 5 5 HELIX 25 25 ALA C 157 LEU C 169 1 13 HELIX 26 26 GLY C 173 ILE C 182 1 10 HELIX 27 27 PHE C 183 ARG C 188 5 6 SHEET 1 A 7 THR A 54 SER A 55 0 SHEET 2 A 7 GLU A 31 THR A 36 1 N THR A 36 O THR A 54 SHEET 3 A 7 ARG A 3 ALA A 7 1 N ILE A 6 O VAL A 33 SHEET 4 A 7 ALA A 66 ILE A 69 1 O VAL A 68 N ALA A 5 SHEET 5 A 7 LEU A 96 ILE A 100 1 O ALA A 98 N ILE A 69 SHEET 6 A 7 VAL A 150 ALA A 153 1 O VAL A 151 N GLY A 99 SHEET 7 A 7 VAL A 145 ASP A 147 -1 N VAL A 145 O THR A 152 SHEET 1 B 4 VAL A 42 THR A 43 0 SHEET 2 B 4 LYS A 49 THR A 51 -1 O VAL A 50 N VAL A 42 SHEET 3 B 4 LYS B 49 THR B 51 -1 O LYS B 49 N THR A 51 SHEET 4 B 4 VAL B 42 THR B 43 -1 N VAL B 42 O VAL B 50 SHEET 1 C 7 THR B 54 SER B 55 0 SHEET 2 C 7 GLU B 31 THR B 36 1 O HIS B 34 N THR B 54 SHEET 3 C 7 ARG B 3 ALA B 7 1 N ILE B 6 O VAL B 33 SHEET 4 C 7 ALA B 66 ILE B 69 1 O VAL B 68 N ALA B 5 SHEET 5 C 7 LEU B 96 ILE B 100 1 O ALA B 98 N ILE B 69 SHEET 6 C 7 VAL B 150 ALA B 153 1 O VAL B 151 N GLY B 99 SHEET 7 C 7 VAL B 145 ASP B 147 -1 N VAL B 145 O THR B 152 SHEET 1 D 7 THR C 54 SER C 55 0 SHEET 2 D 7 GLU C 31 THR C 36 1 N THR C 36 O THR C 54 SHEET 3 D 7 ARG C 3 ALA C 7 1 N ILE C 6 O VAL C 33 SHEET 4 D 7 ALA C 66 ILE C 69 1 O VAL C 68 N ALA C 5 SHEET 5 D 7 LEU C 96 ILE C 100 1 O ALA C 98 N ILE C 69 SHEET 6 D 7 VAL C 150 ALA C 153 1 O VAL C 151 N GLY C 99 SHEET 7 D 7 VAL C 145 ASP C 147 -1 N VAL C 145 O THR C 152 SHEET 1 E 2 VAL C 42 THR C 43 0 SHEET 2 E 2 LYS C 49 VAL C 50 -1 O VAL C 50 N VAL C 42 LINK C MSE A 1 N THR A 2 1555 1555 1.33 LINK C GLY A 39 N MSE A 40 1555 1555 1.33 LINK C MSE A 40 N PRO A 41 1555 1555 1.34 LINK C SER A 44 N MSE A 45 1555 1555 1.33 LINK C MSE A 45 N GLY A 46 1555 1555 1.34 LINK C MSE B 1 N THR B 2 1555 1555 1.33 LINK C GLY B 39 N MSE B 40 1555 1555 1.33 LINK C MSE B 40 N PRO B 41 1555 1555 1.34 LINK C SER B 44 N MSE B 45 1555 1555 1.34 LINK C MSE B 45 N GLY B 46 1555 1555 1.33 LINK C MSE C 1 N THR C 2 1555 1555 1.33 LINK C GLY C 39 N MSE C 40 1555 1555 1.34 LINK C MSE C 40 N PRO C 41 1555 1555 1.37 LINK C SER C 44 N MSE C 45 1555 1555 1.33 LINK C MSE C 45 N GLY C 46 1555 1555 1.33 SITE 1 AC1 5 LYS A 49 ARG B 25 HOH B2023 HOH B2059 SITE 2 AC1 5 HOH B2116 SITE 1 AC2 5 ARG C 25 LYS C 49 HOH C1056 HOH C1068 SITE 2 AC2 5 HOH C1084 SITE 1 AC3 7 TYR A 27 TRP B 15 GLY B 72 LEU B 73 SITE 2 AC3 7 GLU B 76 CYS B 101 ALA B 102 CRYST1 89.411 89.411 163.486 90.00 90.00 90.00 P 41 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011184 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011184 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006117 0.00000 HETATM 1 N MSE A 1 36.031 32.798 31.659 1.00 43.17 N ANISOU 1 N MSE A 1 6075 4707 5618 749 -537 194 N HETATM 2 CA MSE A 1 34.848 33.704 31.735 1.00 40.65 C ANISOU 2 CA MSE A 1 5754 4450 5241 635 -489 192 C HETATM 3 C MSE A 1 35.249 35.129 31.322 1.00 36.24 C ANISOU 3 C MSE A 1 5094 4012 4663 629 -452 138 C HETATM 4 O MSE A 1 36.229 35.690 31.838 1.00 37.16 O ANISOU 4 O MSE A 1 5151 4197 4772 669 -479 146 O HETATM 5 CB MSE A 1 34.227 33.699 33.142 1.00 42.72 C ANISOU 5 CB MSE A 1 6067 4719 5443 567 -518 276 C HETATM 6 CG MSE A 1 32.967 34.611 33.293 1.00 46.89 C ANISOU 6 CG MSE A 1 6589 5314 5911 455 -468 270 C HETATM 7 SE MSE A 1 31.411 34.001 32.180 1.00 74.86 SE ANISOU 7 SE MSE A 1 10192 8785 9463 376 -411 231 SE HETATM 8 CE MSE A 1 31.749 31.929 32.151 1.00 66.23 C ANISOU 8 CE MSE A 1 9218 7512 8434 433 -465 273 C