HEADER SUGAR BINDING PROTEIN 26-DEC-05 2FHL TITLE AVIDIN RELATED PROTEIN (AVR4)-BNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: AVIDIN-RELATED PROTEIN 4/5; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 GENE: AVR4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AVIDIN, AVR4, STREPTAVIDIN, HIGH-AFFINITY, HYDROLYTIC ACTIVITY, SUGAR KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR O.LIVNAH,M.PRIZANT REVDAT 5 30-AUG-23 2FHL 1 REMARK SEQADV REVDAT 4 13-JUL-11 2FHL 1 VERSN REVDAT 3 24-FEB-09 2FHL 1 VERSN REVDAT 2 09-MAY-06 2FHL 1 JRNL REVDAT 1 21-MAR-06 2FHL 0 JRNL AUTH M.PRIZANT,Y.EISENBERG-DOMOVICH,V.P.HYTONEN,M.S.KULOMAA, JRNL AUTH 2 M.WILCHEK,E.A.BAYER,O.LIVNAH JRNL TITL FACTORS DICTATING THE PSEUDOCATALYTIC EFFICIENCY OF AVIDINS JRNL REF J.MOL.BIOL. V. 358 754 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16546211 JRNL DOI 10.1016/J.JMB.2006.02.044 REMARK 2 REMARK 2 RESOLUTION. 1.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 149834 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 7908 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 10911 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 602 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1894 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 295 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.13000 REMARK 3 B22 (A**2) : -0.13000 REMARK 3 B33 (A**2) : 0.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.024 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.024 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.015 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.298 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.970 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2101 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1841 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2846 ; 1.414 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4276 ; 0.853 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 255 ; 6.861 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 313 ; 0.431 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2311 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 458 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 379 ; 0.238 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2307 ; 0.260 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1263 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 183 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.117 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 71 ; 0.241 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.123 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1256 ; 0.871 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2015 ; 1.491 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 845 ; 1.899 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 830 ; 2.963 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2101 ; 1.009 ; 2.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 295 ; 2.219 ; 2.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2052 ; 2.207 ; 2.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2FHL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JAN-06. REMARK 100 THE DEPOSITION ID IS D_1000035885. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9393 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 157254 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.050 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05400 REMARK 200 FOR THE DATA SET : 34.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1Y52 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.0M FORMAT, 0.1 M ACETATE, PH 4.6, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.01400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.01950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.01950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.50700 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.01950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.01950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 82.52100 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.01950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.01950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 27.50700 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.01950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.01950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 82.52100 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 55.01400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SECOND PART OF THE BIOLOGICAL ASSEMBLY IS GENERATED REMARK 300 BY THE TWO FOLD AXIS: -Y, -X, -Z+1/2 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 16190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 78.03900 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 78.03900 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 55.01400 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 ARG A 2 REMARK 465 ALA B 201 REMARK 465 ARG B 202 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 11 OG1 CG2 REMARK 470 SER A 122 O REMARK 470 SER B 322 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 4 CA - CB - SG ANGL. DEV. = 9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BNI A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BNI B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 410 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Y52 RELATED DB: PDB REMARK 900 RELATED ID: 1Y53 RELATED DB: PDB REMARK 900 RELATED ID: 2FHN RELATED DB: PDB DBREF 2FHL A 1 121 UNP P56734 AVR4_CHICK 25 145 DBREF 2FHL B 201 321 UNP P56734 AVR4_CHICK 25 145 SEQADV 2FHL SER A 122 UNP P56734 CLONING ARTIFACT SEQADV 2FHL SER B 322 UNP P56734 CLONING ARTIFACT SEQRES 1 A 122 ALA ARG LYS CYS SER LEU THR GLY LYS TRP THR ASN ASN SEQRES 2 A 122 LEU GLY SER ILE MET THR ILE ARG ALA VAL ASN SER ARG SEQRES 3 A 122 GLY GLU PHE THR GLY THR TYR LEU THR ALA VAL ALA ASP SEQRES 4 A 122 ASN PRO GLY ASN ILE THR LEU SER PRO LEU LEU GLY ILE SEQRES 5 A 122 GLN HIS LYS ARG ALA SER GLN PRO THR PHE GLY PHE THR SEQRES 6 A 122 VAL HIS TRP ASN PHE SER GLU SER THR THR VAL PHE THR SEQRES 7 A 122 GLY GLN CYS PHE ILE ASP ARG ASN GLY LYS GLU VAL LEU SEQRES 8 A 122 LYS THR MET TRP LEU LEU ARG SER SER VAL ASN ASP ILE SEQRES 9 A 122 SER TYR ASP TRP LYS ALA THR ARG VAL GLY TYR ASN ASN SEQRES 10 A 122 PHE THR ARG LEU SER SEQRES 1 B 122 ALA ARG LYS CYS SER LEU THR GLY LYS TRP THR ASN ASN SEQRES 2 B 122 LEU GLY SER ILE MET THR ILE ARG ALA VAL ASN SER ARG SEQRES 3 B 122 GLY GLU PHE THR GLY THR TYR LEU THR ALA VAL ALA ASP SEQRES 4 B 122 ASN PRO GLY ASN ILE THR LEU SER PRO LEU LEU GLY ILE SEQRES 5 B 122 GLN HIS LYS ARG ALA SER GLN PRO THR PHE GLY PHE THR SEQRES 6 B 122 VAL HIS TRP ASN PHE SER GLU SER THR THR VAL PHE THR SEQRES 7 B 122 GLY GLN CYS PHE ILE ASP ARG ASN GLY LYS GLU VAL LEU SEQRES 8 B 122 LYS THR MET TRP LEU LEU ARG SER SER VAL ASN ASP ILE SEQRES 9 B 122 SER TYR ASP TRP LYS ALA THR ARG VAL GLY TYR ASN ASN SEQRES 10 B 122 PHE THR ARG LEU SER HET BNI A 501 25 HET FMT A 402 3 HET FMT A 403 3 HET FMT A 405 3 HET FMT A 407 3 HET BNI B 502 25 HET FMT B 401 3 HET FMT B 404 3 HET FMT B 406 3 HET FMT B 408 3 HET FMT B 409 3 HET FMT B 410 3 HETNAM BNI 5-(2-OXO-HEXAHYDRO-THIENO[3,4-D]IMIDAZOL-6-YL)- HETNAM 2 BNI PENTANOIC ACID (4-NITRO-PHENYL)-AMIDE HETNAM FMT FORMIC ACID HETSYN BNI BIOTINYL P-NITROANILINE FORMUL 3 BNI 2(C16 H20 N4 O4 S) FORMUL 4 FMT 10(C H2 O2) FORMUL 15 HOH *295(H2 O) HELIX 1 1 ASN A 40 ILE A 44 5 5 HELIX 2 2 ASP A 103 LYS A 109 5 7 HELIX 3 3 ASN B 240 ILE B 244 5 5 HELIX 4 4 ASP B 303 LYS B 309 5 7 SHEET 1 A 9 GLY A 8 ASN A 12 0 SHEET 2 A 9 ILE A 17 ILE A 20 -1 O ILE A 20 N GLY A 8 SHEET 3 A 9 GLU A 28 LEU A 34 -1 O LEU A 34 N ILE A 17 SHEET 4 A 9 SER A 47 GLN A 53 -1 O GLY A 51 N PHE A 29 SHEET 5 A 9 THR A 61 HIS A 67 -1 O THR A 65 N LEU A 50 SHEET 6 A 9 THR A 74 ILE A 83 -1 O THR A 75 N VAL A 66 SHEET 7 A 9 GLU A 89 ARG A 98 -1 O ARG A 98 N THR A 74 SHEET 8 A 9 THR A 111 ARG A 120 -1 O ARG A 112 N LEU A 97 SHEET 9 A 9 GLY A 8 ASN A 12 -1 N THR A 11 O THR A 119 SHEET 1 B 9 GLY B 208 ASN B 212 0 SHEET 2 B 9 ILE B 217 ILE B 220 -1 O MET B 218 N TRP B 210 SHEET 3 B 9 GLU B 228 LEU B 234 -1 O LEU B 234 N ILE B 217 SHEET 4 B 9 SER B 247 GLN B 253 -1 O SER B 247 N TYR B 233 SHEET 5 B 9 THR B 261 HIS B 267 -1 O THR B 265 N LEU B 250 SHEET 6 B 9 THR B 274 ILE B 283 -1 O THR B 275 N VAL B 266 SHEET 7 B 9 GLU B 289 ARG B 298 -1 O ARG B 298 N THR B 274 SHEET 8 B 9 THR B 311 ARG B 320 -1 O ARG B 312 N LEU B 297 SHEET 9 B 9 GLY B 208 ASN B 212 -1 N THR B 211 O THR B 319 SSBOND 1 CYS A 4 CYS A 81 1555 1555 1.94 SSBOND 2 CYS B 204 CYS B 281 1555 1555 1.96 SITE 1 AC1 16 ASN A 12 SER A 16 TYR A 33 THR A 35 SITE 2 AC1 16 VAL A 37 ALA A 38 ASP A 39 TRP A 68 SITE 3 AC1 16 SER A 73 THR A 75 TRP A 95 SER A 99 SITE 4 AC1 16 ARG A 112 ASN A 116 HOH A 594 TRP B 308 SITE 1 AC2 16 ASN B 212 SER B 216 TYR B 233 THR B 235 SITE 2 AC2 16 VAL B 237 ALA B 238 ASP B 239 TRP B 268 SITE 3 AC2 16 SER B 273 THR B 275 TRP B 295 SER B 299 SITE 4 AC2 16 ARG B 312 ASN B 316 FMT B 410 HOH B 628 SITE 1 AC3 8 HIS A 67 HOH A 532 HOH A 557 HIS B 254 SITE 2 AC3 8 LYS B 255 ARG B 256 HOH B 547 HOH B 589 SITE 1 AC4 8 ASP A 103 ILE A 104 HOH A 587 HOH A 591 SITE 2 AC4 8 HOH A 664 GLN B 259 PHE B 282 ILE B 283 SITE 1 AC5 9 ARG A 26 ALA A 38 ASP A 39 PRO A 41 SITE 2 AC5 9 HOH A 511 HOH A 514 TYR B 306 LYS B 309 SITE 3 AC5 9 FMT B 404 SITE 1 AC6 8 FMT A 403 HOH A 623 TYR B 306 LYS B 309 SITE 2 AC6 8 FMT B 406 HOH B 567 HOH B 578 HOH B 626 SITE 1 AC7 7 HIS A 54 LYS A 55 ARG A 56 HOH A 553 SITE 2 AC7 7 HIS B 267 HOH B 522 HOH B 532 SITE 1 AC8 7 VAL B 301 ASN B 302 TYR B 306 FMT B 404 SITE 2 AC8 7 HOH B 567 HOH B 584 HOH B 623 SITE 1 AC9 4 VAL A 101 ASN A 102 TYR A 106 HOH A 635 SITE 1 BC1 6 THR B 211 ASN B 212 ASN B 213 ASN B 317 SITE 2 BC1 6 THR B 319 HOH B 585 SITE 1 BC2 6 GLY A 42 ARG A 56 HOH A 619 HIS B 267 SITE 2 BC2 6 ASN B 269 HOH B 523 SITE 1 BC3 4 SER B 271 BNI B 502 HOH B 524 HOH B 548 CRYST1 78.039 78.039 110.028 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012814 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012814 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009089 0.00000