HEADER ENDOCYTOSIS/EXOCYTOSIS, MEMBRANE PROTEIN29-DEC-05 2FIC TITLE THE CRYSTAL STRUCTURE OF THE BAR DOMAIN FROM HUMAN BIN1/AMPHIPHYSIN II TITLE 2 AND ITS IMPLICATIONS FOR MOLECULAR RECOGNITION COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYC BOX-DEPENDENT-INTERACTING PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: BAR DOMAIN; COMPND 5 SYNONYM: AMPHIPHYSIN II,AMPHIPHYSIN-LIKE PROTEIN,BOX-DEPENDENT MYC- COMPND 6 INTERACTING PROTEIN 1,BRIDGING INTEGRATOR 1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BIN1, AMPHL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET14B KEYWDS BAR DOMAIN, HOMODIMER, COILED-COILS, ENDOCYTOSIS/EXOCYTOSIS, MEMBRANE KEYWDS 2 PROTEIN COMPLEX, ENDOCYTOSIS-EXOCYTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR E.CASAL,L.FEDERICI,W.ZHANG,J.FERNANDEZ-RECIO,E.M.PRIEGO,R.N.MIGUEL, AUTHOR 2 J.B.DUHADAWAY,G.C.PRENDERGAST,B.F.LUISI,E.D.LAUE REVDAT 5 13-MAR-24 2FIC 1 REMARK REVDAT 4 24-OCT-18 2FIC 1 COMPND SOURCE DBREF SEQADV REVDAT 3 13-JUL-11 2FIC 1 VERSN REVDAT 2 24-FEB-09 2FIC 1 VERSN REVDAT 1 14-NOV-06 2FIC 0 JRNL AUTH E.CASAL,L.FEDERICI,W.ZHANG,J.FERNANDEZ-RECIO,E.M.PRIEGO, JRNL AUTH 2 R.N.MIGUEL,J.B.DUHADAWAY,G.C.PRENDERGAST,B.F.LUISI,E.D.LAUE JRNL TITL THE CRYSTAL STRUCTURE OF THE BAR DOMAIN FROM HUMAN JRNL TITL 2 BIN1/AMPHIPHYSIN II AND ITS IMPLICATIONS FOR MOLECULAR JRNL TITL 3 RECOGNITION JRNL REF BIOCHEMISTRY V. 45 12917 2006 JRNL REFN ISSN 0006-2960 JRNL PMID 17059209 JRNL DOI 10.1021/BI060717K REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 32894 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3653 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.04 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2065 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE SET COUNT : 217 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3206 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 192 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.72000 REMARK 3 B22 (A**2) : -0.91000 REMARK 3 B33 (A**2) : -2.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.35000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.202 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.188 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.138 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.994 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3282 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2885 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4417 ; 1.642 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6772 ; 0.957 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 390 ; 5.806 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 475 ; 0.171 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3640 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 622 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 792 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3101 ; 0.235 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1873 ; 0.093 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 148 ; 0.322 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 19 ; 0.233 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 103 ; 0.241 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.205 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1962 ; 1.018 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3144 ; 1.879 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1320 ; 2.947 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1273 ; 4.729 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 52 A 103 REMARK 3 ORIGIN FOR THE GROUP (A): 18.0215 4.1108 17.9641 REMARK 3 T TENSOR REMARK 3 T11: 0.1926 T22: 0.2125 REMARK 3 T33: 0.2637 T12: -0.1021 REMARK 3 T13: -0.0197 T23: 0.0266 REMARK 3 L TENSOR REMARK 3 L11: 1.0174 L22: 1.0335 REMARK 3 L33: 19.7886 L12: -1.2800 REMARK 3 L13: 4.5917 L23: -3.4827 REMARK 3 S TENSOR REMARK 3 S11: -0.1089 S12: 0.1790 S13: 0.1081 REMARK 3 S21: 0.2574 S22: 0.0196 S23: -0.0403 REMARK 3 S31: -0.4809 S32: 0.4405 S33: 0.0893 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 104 A 159 REMARK 3 ORIGIN FOR THE GROUP (A): 11.2009 2.3667 22.3844 REMARK 3 T TENSOR REMARK 3 T11: 0.1721 T22: 0.2410 REMARK 3 T33: 0.2789 T12: -0.0297 REMARK 3 T13: 0.0026 T23: 0.0231 REMARK 3 L TENSOR REMARK 3 L11: -0.1749 L22: 0.5880 REMARK 3 L33: 6.5984 L12: -0.2027 REMARK 3 L13: 0.3528 L23: -0.1037 REMARK 3 S TENSOR REMARK 3 S11: -0.0677 S12: 0.0474 S13: 0.0838 REMARK 3 S21: 0.1653 S22: -0.0309 S23: 0.0513 REMARK 3 S31: 0.2097 S32: -0.2654 S33: 0.0986 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 160 A 171 REMARK 3 ORIGIN FOR THE GROUP (A): 21.9452 4.6108 71.9234 REMARK 3 T TENSOR REMARK 3 T11: 0.2834 T22: 0.2825 REMARK 3 T33: 0.2820 T12: -0.0004 REMARK 3 T13: -0.0003 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 32.6351 L22: 41.4963 REMARK 3 L33: 109.2888 L12: -2.4959 REMARK 3 L13: 16.9537 L23: 10.2735 REMARK 3 S TENSOR REMARK 3 S11: 0.3356 S12: -2.2633 S13: 0.0684 REMARK 3 S21: 2.1274 S22: -0.1552 S23: -0.0943 REMARK 3 S31: -0.6614 S32: 0.1479 S33: -0.1803 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 172 A 181 REMARK 3 ORIGIN FOR THE GROUP (A): 19.2050 7.7945 80.4558 REMARK 3 T TENSOR REMARK 3 T11: 0.2818 T22: 0.2826 REMARK 3 T33: 0.2826 T12: -0.0006 REMARK 3 T13: -0.0005 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 32.9903 L22: 70.8135 REMARK 3 L33: 76.1087 L12: 34.7389 REMARK 3 L13: 2.9333 L23: -12.4532 REMARK 3 S TENSOR REMARK 3 S11: 0.0901 S12: 0.3148 S13: -0.8205 REMARK 3 S21: 0.1563 S22: 0.1574 S23: 0.2560 REMARK 3 S31: -0.3822 S32: -0.1571 S33: -0.2475 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 182 A 211 REMARK 3 ORIGIN FOR THE GROUP (A): 14.1148 -1.3468 58.2438 REMARK 3 T TENSOR REMARK 3 T11: 0.2804 T22: 0.2794 REMARK 3 T33: 0.2754 T12: 0.0014 REMARK 3 T13: 0.0028 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.9917 L22: 6.5515 REMARK 3 L33: 30.1311 L12: -1.6802 REMARK 3 L13: -2.0878 L23: 10.1471 REMARK 3 S TENSOR REMARK 3 S11: -0.1817 S12: -0.3363 S13: 0.0613 REMARK 3 S21: 0.7269 S22: 0.0322 S23: 0.4178 REMARK 3 S31: 1.5064 S32: -1.0687 S33: 0.1496 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 212 A 249 REMARK 3 ORIGIN FOR THE GROUP (A): 14.4823 -6.3329 7.9692 REMARK 3 T TENSOR REMARK 3 T11: 0.1742 T22: 0.2173 REMARK 3 T33: 0.2827 T12: -0.0249 REMARK 3 T13: -0.0309 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 0.3380 L22: 1.9043 REMARK 3 L33: 17.4769 L12: -0.8563 REMARK 3 L13: 2.6633 L23: -3.9859 REMARK 3 S TENSOR REMARK 3 S11: 0.1776 S12: 0.0141 S13: 0.0246 REMARK 3 S21: -0.1677 S22: -0.0460 S23: 0.0736 REMARK 3 S31: 0.5572 S32: 0.2210 S33: -0.1316 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 50 B 103 REMARK 3 ORIGIN FOR THE GROUP (A): 47.3818 -19.3166 0.9417 REMARK 3 T TENSOR REMARK 3 T11: 0.0858 T22: 0.3866 REMARK 3 T33: 0.2958 T12: 0.1812 REMARK 3 T13: -0.0472 T23: -0.1323 REMARK 3 L TENSOR REMARK 3 L11: 0.4487 L22: 7.2893 REMARK 3 L33: 18.7991 L12: 2.4617 REMARK 3 L13: 3.3963 L23: 11.2062 REMARK 3 S TENSOR REMARK 3 S11: 0.0109 S12: -0.1745 S13: 0.1535 REMARK 3 S21: -0.2669 S22: -0.3609 S23: 0.1758 REMARK 3 S31: -0.4093 S32: -0.7190 S33: 0.3499 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 104 B 166 REMARK 3 ORIGIN FOR THE GROUP (A): 41.1418 -17.8040 8.5144 REMARK 3 T TENSOR REMARK 3 T11: 0.0553 T22: 0.4506 REMARK 3 T33: 0.3500 T12: 0.0861 REMARK 3 T13: -0.0149 T23: -0.2236 REMARK 3 L TENSOR REMARK 3 L11: -0.5135 L22: 9.1698 REMARK 3 L33: 9.1767 L12: -0.5046 REMARK 3 L13: -0.6044 L23: 9.0606 REMARK 3 S TENSOR REMARK 3 S11: -0.0084 S12: 0.0299 S13: 0.0509 REMARK 3 S21: -0.0884 S22: -0.4634 S23: 0.4928 REMARK 3 S31: -0.1155 S32: -0.5490 S33: 0.4717 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 179 B 211 REMARK 3 ORIGIN FOR THE GROUP (A): 39.8799 1.3099 35.7121 REMARK 3 T TENSOR REMARK 3 T11: 0.1940 T22: 0.2948 REMARK 3 T33: 0.2921 T12: 0.0136 REMARK 3 T13: 0.1284 T23: -0.1099 REMARK 3 L TENSOR REMARK 3 L11: 6.3791 L22: 21.7357 REMARK 3 L33: 11.0484 L12: -10.9089 REMARK 3 L13: -7.1069 L23: 16.3890 REMARK 3 S TENSOR REMARK 3 S11: -0.4481 S12: 0.4696 S13: -0.4827 REMARK 3 S21: 0.7720 S22: -0.4223 S23: 1.1232 REMARK 3 S31: 0.6064 S32: -0.5354 S33: 0.8704 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 212 B 250 REMARK 3 ORIGIN FOR THE GROUP (A): 49.7085 -34.7449 -1.5524 REMARK 3 T TENSOR REMARK 3 T11: 0.1653 T22: 0.2328 REMARK 3 T33: 0.2412 T12: 0.0166 REMARK 3 T13: 0.0022 T23: -0.0700 REMARK 3 L TENSOR REMARK 3 L11: 0.1636 L22: 8.2065 REMARK 3 L33: 15.9849 L12: 0.4938 REMARK 3 L13: 0.5249 L23: 11.1857 REMARK 3 S TENSOR REMARK 3 S11: 0.0415 S12: -0.0958 S13: 0.0750 REMARK 3 S21: 0.3277 S22: -0.1025 S23: 0.1451 REMARK 3 S31: 0.5185 S32: -0.1262 S33: 0.0610 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2FIC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-JAN-06. REMARK 100 THE DEPOSITION ID IS D_1000035911. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36616 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 27.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% MONOMETHYLETHER-PEG550, 100MM TRIS REMARK 280 (PH 8), 100MM NACL, PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.54300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE PHYSIOLOGICAL DIMER IS GENERATED BY APPLYING THE REMARK 300 FOLLOWING TO CHAIN A: ROTATION: -0.90244 0.408204 0.137733 0.401865 REMARK 300 0.682401 0.610601 0.155261 0.606381 -0.77987 TRANSLATION: 34.9167, - REMARK 300 11.5281, 9.41392 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 69.92200 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 29.54300 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 SER A 2 REMARK 465 GLY A 3 REMARK 465 LEU A 4 REMARK 465 VAL A 5 REMARK 465 PRO A 6 REMARK 465 ARG A 7 REMARK 465 GLY A 8 REMARK 465 SER A 9 REMARK 465 HIS A 10 REMARK 465 MET A 11 REMARK 465 ALA A 12 REMARK 465 GLU A 13 REMARK 465 MET A 14 REMARK 465 GLY A 15 REMARK 465 SER A 16 REMARK 465 LYS A 17 REMARK 465 GLY A 18 REMARK 465 VAL A 19 REMARK 465 THR A 20 REMARK 465 ALA A 21 REMARK 465 GLY A 22 REMARK 465 LYS A 23 REMARK 465 ILE A 24 REMARK 465 ALA A 25 REMARK 465 SER A 26 REMARK 465 ASN A 27 REMARK 465 VAL A 28 REMARK 465 GLN A 29 REMARK 465 LYS A 30 REMARK 465 LYS A 31 REMARK 465 LEU A 32 REMARK 465 THR A 33 REMARK 465 ARG A 34 REMARK 465 ALA A 35 REMARK 465 GLN A 36 REMARK 465 GLU A 37 REMARK 465 LYS A 38 REMARK 465 VAL A 39 REMARK 465 LEU A 40 REMARK 465 GLN A 41 REMARK 465 LYS A 42 REMARK 465 LEU A 43 REMARK 465 GLY A 44 REMARK 465 LYS A 45 REMARK 465 ALA A 46 REMARK 465 ASP A 47 REMARK 465 GLU A 48 REMARK 465 THR A 49 REMARK 465 LYS A 50 REMARK 465 ASP A 51 REMARK 465 ALA A 173 REMARK 465 LYS A 174 REMARK 465 LYS A 175 REMARK 465 LYS A 176 REMARK 465 ASP A 177 REMARK 465 GLU A 178 REMARK 465 ALA A 179 REMARK 465 GLU A 250 REMARK 465 LYS A 251 REMARK 465 SER B 1 REMARK 465 SER B 2 REMARK 465 GLY B 3 REMARK 465 LEU B 4 REMARK 465 VAL B 5 REMARK 465 PRO B 6 REMARK 465 ARG B 7 REMARK 465 GLY B 8 REMARK 465 SER B 9 REMARK 465 HIS B 10 REMARK 465 MET B 11 REMARK 465 ALA B 12 REMARK 465 GLU B 13 REMARK 465 MET B 14 REMARK 465 GLY B 15 REMARK 465 SER B 16 REMARK 465 LYS B 17 REMARK 465 GLY B 18 REMARK 465 VAL B 19 REMARK 465 THR B 20 REMARK 465 ALA B 21 REMARK 465 GLY B 22 REMARK 465 LYS B 23 REMARK 465 ILE B 24 REMARK 465 ALA B 25 REMARK 465 SER B 26 REMARK 465 ASN B 27 REMARK 465 VAL B 28 REMARK 465 GLN B 29 REMARK 465 LYS B 30 REMARK 465 LYS B 31 REMARK 465 LEU B 32 REMARK 465 THR B 33 REMARK 465 ARG B 34 REMARK 465 ALA B 35 REMARK 465 GLN B 36 REMARK 465 GLU B 37 REMARK 465 LYS B 38 REMARK 465 VAL B 39 REMARK 465 LEU B 40 REMARK 465 GLN B 41 REMARK 465 LYS B 42 REMARK 465 LEU B 43 REMARK 465 GLY B 44 REMARK 465 LYS B 45 REMARK 465 ALA B 46 REMARK 465 ASP B 47 REMARK 465 GLU B 48 REMARK 465 THR B 49 REMARK 465 LYS B 251 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 168 CG CD OE1 OE2 REMARK 470 SER A 169 OG REMARK 470 LYS B 50 CG CD CE NZ REMARK 470 ASP B 137 CG OD1 OD2 REMARK 470 LYS B 174 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 74 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 118 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG B 70 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG B 70 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ASP B 74 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 177 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS B 174 72.88 41.45 REMARK 500 LYS B 175 118.91 23.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS B 50 ASP B 51 137.54 REMARK 500 ALA B 173 LYS B 174 54.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XE B 1002 REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE OF THE PROTEIN WAS BASED ON ISOFORM IIB OF DATABASE UNP REMARK 999 O00499 (BIN1_HUMAN). DBREF 2FIC A 11 251 UNP O00499 BIN1_HUMAN 1 241 DBREF 2FIC B 11 251 UNP O00499 BIN1_HUMAN 1 241 SEQADV 2FIC SER A 1 UNP O00499 EXPRESSION TAG SEQADV 2FIC SER A 2 UNP O00499 EXPRESSION TAG SEQADV 2FIC GLY A 3 UNP O00499 EXPRESSION TAG SEQADV 2FIC LEU A 4 UNP O00499 EXPRESSION TAG SEQADV 2FIC VAL A 5 UNP O00499 EXPRESSION TAG SEQADV 2FIC PRO A 6 UNP O00499 EXPRESSION TAG SEQADV 2FIC ARG A 7 UNP O00499 EXPRESSION TAG SEQADV 2FIC GLY A 8 UNP O00499 EXPRESSION TAG SEQADV 2FIC SER A 9 UNP O00499 EXPRESSION TAG SEQADV 2FIC HIS A 10 UNP O00499 EXPRESSION TAG SEQADV 2FIC SER B 1 UNP O00499 EXPRESSION TAG SEQADV 2FIC SER B 2 UNP O00499 EXPRESSION TAG SEQADV 2FIC GLY B 3 UNP O00499 EXPRESSION TAG SEQADV 2FIC LEU B 4 UNP O00499 EXPRESSION TAG SEQADV 2FIC VAL B 5 UNP O00499 EXPRESSION TAG SEQADV 2FIC PRO B 6 UNP O00499 EXPRESSION TAG SEQADV 2FIC ARG B 7 UNP O00499 EXPRESSION TAG SEQADV 2FIC GLY B 8 UNP O00499 EXPRESSION TAG SEQADV 2FIC SER B 9 UNP O00499 EXPRESSION TAG SEQADV 2FIC HIS B 10 UNP O00499 EXPRESSION TAG SEQRES 1 A 251 SER SER GLY LEU VAL PRO ARG GLY SER HIS MET ALA GLU SEQRES 2 A 251 MET GLY SER LYS GLY VAL THR ALA GLY LYS ILE ALA SER SEQRES 3 A 251 ASN VAL GLN LYS LYS LEU THR ARG ALA GLN GLU LYS VAL SEQRES 4 A 251 LEU GLN LYS LEU GLY LYS ALA ASP GLU THR LYS ASP GLU SEQRES 5 A 251 GLN PHE GLU GLN CYS VAL GLN ASN PHE ASN LYS GLN LEU SEQRES 6 A 251 THR GLU GLY THR ARG LEU GLN LYS ASP LEU ARG THR TYR SEQRES 7 A 251 LEU ALA SER VAL LYS ALA MET HIS GLU ALA SER LYS LYS SEQRES 8 A 251 LEU ASN GLU CYS LEU GLN GLU VAL TYR GLU PRO ASP TRP SEQRES 9 A 251 PRO GLY ARG ASP GLU ALA ASN LYS ILE ALA GLU ASN ASN SEQRES 10 A 251 ASP LEU LEU TRP MET ASP TYR HIS GLN LYS LEU VAL ASP SEQRES 11 A 251 GLN ALA LEU LEU THR MET ASP THR TYR LEU GLY GLN PHE SEQRES 12 A 251 PRO ASP ILE LYS SER ARG ILE ALA LYS ARG GLY ARG LYS SEQRES 13 A 251 LEU VAL ASP TYR ASP SER ALA ARG HIS HIS TYR GLU SER SEQRES 14 A 251 LEU GLN THR ALA LYS LYS LYS ASP GLU ALA LYS ILE ALA SEQRES 15 A 251 LYS ALA GLU GLU GLU LEU ILE LYS ALA GLN LYS VAL PHE SEQRES 16 A 251 GLU GLU MET ASN VAL ASP LEU GLN GLU GLU LEU PRO SER SEQRES 17 A 251 LEU TRP ASN SER ARG VAL GLY PHE TYR VAL ASN THR PHE SEQRES 18 A 251 GLN SER ILE ALA GLY LEU GLU GLU ASN PHE HIS LYS GLU SEQRES 19 A 251 MET SER LYS LEU ASN GLN ASN LEU ASN ASP VAL LEU VAL SEQRES 20 A 251 GLY LEU GLU LYS SEQRES 1 B 251 SER SER GLY LEU VAL PRO ARG GLY SER HIS MET ALA GLU SEQRES 2 B 251 MET GLY SER LYS GLY VAL THR ALA GLY LYS ILE ALA SER SEQRES 3 B 251 ASN VAL GLN LYS LYS LEU THR ARG ALA GLN GLU LYS VAL SEQRES 4 B 251 LEU GLN LYS LEU GLY LYS ALA ASP GLU THR LYS ASP GLU SEQRES 5 B 251 GLN PHE GLU GLN CYS VAL GLN ASN PHE ASN LYS GLN LEU SEQRES 6 B 251 THR GLU GLY THR ARG LEU GLN LYS ASP LEU ARG THR TYR SEQRES 7 B 251 LEU ALA SER VAL LYS ALA MET HIS GLU ALA SER LYS LYS SEQRES 8 B 251 LEU ASN GLU CYS LEU GLN GLU VAL TYR GLU PRO ASP TRP SEQRES 9 B 251 PRO GLY ARG ASP GLU ALA ASN LYS ILE ALA GLU ASN ASN SEQRES 10 B 251 ASP LEU LEU TRP MET ASP TYR HIS GLN LYS LEU VAL ASP SEQRES 11 B 251 GLN ALA LEU LEU THR MET ASP THR TYR LEU GLY GLN PHE SEQRES 12 B 251 PRO ASP ILE LYS SER ARG ILE ALA LYS ARG GLY ARG LYS SEQRES 13 B 251 LEU VAL ASP TYR ASP SER ALA ARG HIS HIS TYR GLU SER SEQRES 14 B 251 LEU GLN THR ALA LYS LYS LYS ASP GLU ALA LYS ILE ALA SEQRES 15 B 251 LYS ALA GLU GLU GLU LEU ILE LYS ALA GLN LYS VAL PHE SEQRES 16 B 251 GLU GLU MET ASN VAL ASP LEU GLN GLU GLU LEU PRO SER SEQRES 17 B 251 LEU TRP ASN SER ARG VAL GLY PHE TYR VAL ASN THR PHE SEQRES 18 B 251 GLN SER ILE ALA GLY LEU GLU GLU ASN PHE HIS LYS GLU SEQRES 19 B 251 MET SER LYS LEU ASN GLN ASN LEU ASN ASP VAL LEU VAL SEQRES 20 B 251 GLY LEU GLU LYS HET XE A1001 1 HET XE B1002 1 HETNAM XE XENON FORMUL 3 XE 2(XE) FORMUL 5 HOH *192(H2 O) HELIX 1 1 GLU A 52 TYR A 100 1 49 HELIX 2 2 GLY A 106 ALA A 132 1 27 HELIX 3 3 ALA A 132 GLN A 142 1 11 HELIX 4 4 GLN A 142 THR A 172 1 31 HELIX 5 5 LYS A 180 GLY A 248 1 69 HELIX 6 6 LYS B 50 TYR B 100 1 51 HELIX 7 7 GLY B 106 ALA B 132 1 27 HELIX 8 8 MET B 136 GLN B 142 1 7 HELIX 9 9 GLN B 142 GLN B 171 1 30 HELIX 10 10 ASP B 177 GLY B 248 1 72 SITE 1 AC1 1 VAL B 218 CRYST1 69.922 59.086 75.009 90.00 117.53 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014302 0.000000 0.007454 0.00000 SCALE2 0.000000 0.016924 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015034 0.00000