data_2FIJ
# 
_entry.id   2FIJ 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.377 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   2FIJ         pdb_00002fij 10.2210/pdb2fij/pdb 
NDB   AD0060       ?            ?                   
RCSB  RCSB035918   ?            ?                   
WWPDB D_1000035918 ?            ?                   
# 
loop_
_pdbx_database_related.db_name 
_pdbx_database_related.db_id 
_pdbx_database_related.details 
_pdbx_database_related.content_type 
PDB 2FIH . unspecified 
PDB 2FII . unspecified 
PDB 2FIL . unspecified 
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        2FIJ 
_pdbx_database_status.recvd_initial_deposition_date   2005-12-29 
_pdbx_database_status.deposit_site                    RCSB 
_pdbx_database_status.process_site                    RCSB 
_pdbx_database_status.status_code_sf                  REL 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.SG_entry                        ? 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.methods_development_category    ? 
_pdbx_database_status.status_code_nmr_data            ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Egli, M.' 1 
'Li, F.'   2 
# 
_citation.id                        primary 
_citation.title                     
;2'-Fluoroarabino- and arabinonucleic acid show different conformations, resulting in deviating RNA affinities and processing of their heteroduplexes with RNA by RNase H.
;
_citation.journal_abbrev            Biochemistry 
_citation.journal_volume            45 
_citation.page_first                4141 
_citation.page_last                 4152 
_citation.year                      2006 
_citation.journal_id_ASTM           BICHAW 
_citation.country                   US 
_citation.journal_id_ISSN           0006-2960 
_citation.journal_id_CSD            0033 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   16566588 
_citation.pdbx_database_id_DOI      10.1021/bi052322r 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Li, F.'        1 ? 
primary 'Sarkhel, S.'   2 ? 
primary 'Wilds, C.J.'   3 ? 
primary 'Wawrzak, Z.'   4 ? 
primary 'Prakash, T.P.' 5 ? 
primary 'Manoharan, M.' 6 ? 
primary 'Egli, M.'      7 ? 
# 
_cell.entry_id           2FIJ 
_cell.length_a           32.277 
_cell.length_b           32.469 
_cell.length_c           66.749 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        90.00 
_cell.Z_PDB              8 
_cell.pdbx_unique_axis   ? 
_cell.length_a_esd       ? 
_cell.length_b_esd       ? 
_cell.length_c_esd       ? 
_cell.angle_alpha_esd    ? 
_cell.angle_beta_esd     ? 
_cell.angle_gamma_esd    ? 
# 
_symmetry.entry_id                         2FIJ 
_symmetry.space_group_name_H-M             'P 21 21 21' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                19 
_symmetry.space_group_name_Hall            ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer     syn "5'-D(*GP*CP*GP*TP*(A2M)P*(UAR)P*AP*CP*GP*C)-3'" 3077.004 2   ? 
;2'-Methylation at A5 and incorperated arabino-U at position 6
;
? ? 
2 non-polymer syn 'CHLORIDE ION'                                   35.453   1   ? ? ? ? 
3 non-polymer syn 'COBALT HEXAMMINE(III)'                          161.116  3   ? ? ? ? 
4 water       nat water                                            18.015   128 ? ? ? ? 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polydeoxyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   yes 
_entity_poly.pdbx_seq_one_letter_code       '(DG)(DC)(DG)(DT)(A2M)(UAR)(DA)(DC)(DG)(DC)' 
_entity_poly.pdbx_seq_one_letter_code_can   GCGTAUACGC 
_entity_poly.pdbx_strand_id                 A,B 
_entity_poly.pdbx_target_identifier         ? 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1  DG  n 
1 2  DC  n 
1 3  DG  n 
1 4  DT  n 
1 5  A2M n 
1 6  UAR n 
1 7  DA  n 
1 8  DC  n 
1 9  DG  n 
1 10 DC  n 
# 
_struct_ref.id                         1 
_struct_ref.entity_id                  1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    2FIJ 
_struct_ref.pdbx_db_accession          2FIJ 
_struct_ref.pdbx_align_begin           ? 
_struct_ref.pdbx_seq_one_letter_code   ? 
_struct_ref.pdbx_db_isoform            ? 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 2FIJ A 1 ? 10 ? 2FIJ 1  ? 10 ? 1  10 
2 1 2FIJ B 1 ? 10 ? 2FIJ 11 ? 20 ? 11 20 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
A2M 'RNA linking' n 
;2'-O-methyladenosine 5'-(dihydrogen phosphate)
;
? 'C11 H16 N5 O7 P' 361.248 
CL  non-polymer   . 'CHLORIDE ION'                                   ? 'Cl -1'           35.453  
DA  'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE"             ? 'C10 H14 N5 O6 P' 331.222 
DC  'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE"              ? 'C9 H14 N3 O7 P'  307.197 
DG  'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE"             ? 'C10 H14 N5 O7 P' 347.221 
DT  'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE"                     ? 'C10 H15 N2 O8 P' 322.208 
HOH non-polymer   . WATER                                            ? 'H2 O'            18.015  
NCO non-polymer   . 'COBALT HEXAMMINE(III)'                          ? 'Co H18 N6 3'     161.116 
UAR 'RNA linking' n 
;URACIL ARABINOSE-5'-PHOSPHATE
;
? 'C9 H13 N2 O9 P'  324.181 
# 
_exptl.entry_id          2FIJ 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   1 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_Matthews      2.74 
_exptl_crystal.density_percent_sol   55.14 
_exptl_crystal.description           ? 
_exptl_crystal.F_000                 ? 
_exptl_crystal.preparation           ? 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          'VAPOR DIFFUSION, HANGING DROP' 
_exptl_crystal_grow.temp            291 
_exptl_crystal_grow.temp_details    ? 
_exptl_crystal_grow.pH              5.5 
_exptl_crystal_grow.pdbx_details    
;Final droplet composition: 1 mM oligonucleotide, 10% MPD, 20 mM sodium cacodylate, pH 5.5, 10 mM cobalt hexamine, 20 mM LiCl and 10 mM MgCl2., VAPOR DIFFUSION, HANGING DROP, temperature 291K
;
_exptl_crystal_grow.pdbx_pH_range   . 
# 
loop_
_exptl_crystal_grow_comp.crystal_id 
_exptl_crystal_grow_comp.id 
_exptl_crystal_grow_comp.sol_id 
_exptl_crystal_grow_comp.name 
_exptl_crystal_grow_comp.volume 
_exptl_crystal_grow_comp.conc 
_exptl_crystal_grow_comp.details 
1 1  1 MPD                 ? ? ? 
1 2  1 'sodium cacodylate' ? ? ? 
1 3  1 'cobalt hexamine'   ? ? ? 
1 4  1 LiCl                ? ? ? 
1 5  1 MgCl2               ? ? ? 
1 6  1 H2O                 ? ? ? 
1 7  2 MPD                 ? ? ? 
1 8  2 'sodium cacodylate' ? ? ? 
1 9  2 'cobalt hexamine'   ? ? ? 
1 10 2 LiCl                ? ? ? 
1 11 2 MgCl2               ? ? ? 
1 12 2 H2O                 ? ? ? 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           103 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               CCD 
_diffrn_detector.type                   MARRESEARCH 
_diffrn_detector.pdbx_collection_date   2003-06-21 
_diffrn_detector.details                ? 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   M 
_diffrn_radiation.monochromator                    ? 
_diffrn_radiation.pdbx_diffrn_protocol             'SINGLE WAVELENGTH' 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   1.60914 
_diffrn_radiation_wavelength.wt           1.0 
# 
_diffrn_source.diffrn_id                   1 
_diffrn_source.source                      SYNCHROTRON 
_diffrn_source.type                        'APS BEAMLINE 5ID-B' 
_diffrn_source.pdbx_synchrotron_site       APS 
_diffrn_source.pdbx_synchrotron_beamline   5ID-B 
_diffrn_source.pdbx_wavelength             ? 
_diffrn_source.pdbx_wavelength_list        1.60914 
# 
_reflns.entry_id                     2FIJ 
_reflns.observed_criterion_sigma_I   0.0 
_reflns.observed_criterion_sigma_F   0.0 
_reflns.d_resolution_low             33.37 
_reflns.d_resolution_high            1.19 
_reflns.number_obs                   21724 
_reflns.number_all                   21724 
_reflns.percent_possible_obs         93.7 
_reflns.pdbx_Rmerge_I_obs            0.063 
_reflns.pdbx_Rsym_value              ? 
_reflns.pdbx_netI_over_sigmaI        13.4 
_reflns.B_iso_Wilson_estimate        ? 
_reflns.pdbx_redundancy              ? 
_reflns.R_free_details               ? 
_reflns.pdbx_chi_squared             ? 
_reflns.pdbx_scaling_rejects         ? 
_reflns.pdbx_ordinal                 1 
_reflns.pdbx_diffrn_id               1 
# 
_reflns_shell.d_res_high             1.19 
_reflns_shell.d_res_low              1.27 
_reflns_shell.percent_possible_all   91.0 
_reflns_shell.Rmerge_I_obs           0.29 
_reflns_shell.pdbx_Rsym_value        ? 
_reflns_shell.meanI_over_sigI_obs    3.7 
_reflns_shell.pdbx_redundancy        ? 
_reflns_shell.percent_possible_obs   ? 
_reflns_shell.number_unique_all      4020 
_reflns_shell.number_measured_all    ? 
_reflns_shell.number_measured_obs    ? 
_reflns_shell.number_unique_obs      ? 
_reflns_shell.pdbx_chi_squared       ? 
_reflns_shell.pdbx_ordinal           1 
_reflns_shell.pdbx_diffrn_id         1 
# 
_refine.entry_id                                 2FIJ 
_refine.ls_number_reflns_obs                     21724 
_refine.ls_number_reflns_all                     21724 
_refine.pdbx_ls_sigma_I                          ? 
_refine.pdbx_ls_sigma_F                          ? 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.ls_d_res_low                             33.37 
_refine.ls_d_res_high                            1.19 
_refine.ls_percent_reflns_obs                    93.69 
_refine.ls_R_factor_obs                          0.15856 
_refine.ls_R_factor_all                          0.15856 
_refine.ls_R_factor_R_work                       0.15736 
_refine.ls_R_factor_R_free                       0.16922 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.ls_percent_reflns_R_free                 10.2 
_refine.ls_number_reflns_R_free                  2208 
_refine.ls_number_parameters                     ? 
_refine.ls_number_restraints                     ? 
_refine.occupancy_min                            ? 
_refine.occupancy_max                            ? 
_refine.correlation_coeff_Fo_to_Fc               0.973 
_refine.correlation_coeff_Fo_to_Fc_free          0.974 
_refine.B_iso_mean                               12.888 
_refine.aniso_B[1][1]                            0.14 
_refine.aniso_B[2][2]                            0.18 
_refine.aniso_B[3][3]                            -0.32 
_refine.aniso_B[1][2]                            0.00 
_refine.aniso_B[1][3]                            0.00 
_refine.aniso_B[2][3]                            0.00 
_refine.solvent_model_details                    'BABINET MODEL WITH MASK' 
_refine.solvent_model_param_ksol                 ? 
_refine.solvent_model_param_bsol                 ? 
_refine.pdbx_solvent_vdw_probe_radii             1.20 
_refine.pdbx_solvent_ion_probe_radii             0.80 
_refine.pdbx_solvent_shrinkage_radii             0.80 
_refine.pdbx_ls_cross_valid_method               THROUGHOUT 
_refine.details                                  'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' 
_refine.pdbx_starting_model                      'NDB entry AD0007/PDB entry 1DPL' 
_refine.pdbx_method_to_determine_struct          'MOLECULAR REPLACEMENT' 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.pdbx_stereochemistry_target_values       'MAXIMUM LIKELIHOOD' 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_R_Free_selection_details            RANDOM 
_refine.pdbx_overall_ESU_R                       0.039 
_refine.pdbx_overall_ESU_R_Free                  0.036 
_refine.overall_SU_ML                            0.022 
_refine.overall_SU_B                             1.083 
_refine.ls_redundancy_reflns_obs                 ? 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.overall_SU_R_free                        ? 
_refine.ls_wR_factor_R_free                      ? 
_refine.ls_wR_factor_R_work                      ? 
_refine.overall_FOM_free_R_set                   ? 
_refine.overall_FOM_work_R_set                   ? 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_overall_phase_error                 ? 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   408 
_refine_hist.pdbx_number_atoms_ligand         22 
_refine_hist.number_atoms_solvent             128 
_refine_hist.number_atoms_total               558 
_refine_hist.d_res_high                       1.19 
_refine_hist.d_res_low                        33.37 
# 
loop_
_refine_ls_restr.type 
_refine_ls_restr.dev_ideal 
_refine_ls_restr.dev_ideal_target 
_refine_ls_restr.weight 
_refine_ls_restr.number 
_refine_ls_restr.pdbx_refine_id 
_refine_ls_restr.pdbx_restraint_function 
r_bond_refined_d         0.007 0.021 ? 468 'X-RAY DIFFRACTION' ? 
r_bond_other_d           0.001 0.020 ? 201 'X-RAY DIFFRACTION' ? 
r_angle_refined_deg      1.260 3.000 ? 721 'X-RAY DIFFRACTION' ? 
r_angle_other_deg        1.145 3.000 ? 494 'X-RAY DIFFRACTION' ? 
r_chiral_restr           0.062 0.200 ? 80  'X-RAY DIFFRACTION' ? 
r_gen_planes_refined     0.015 0.020 ? 206 'X-RAY DIFFRACTION' ? 
r_nbd_refined            0.537 0.200 ? 86  'X-RAY DIFFRACTION' ? 
r_nbd_other              0.246 0.200 ? 244 'X-RAY DIFFRACTION' ? 
r_nbtor_refined          0.261 0.200 ? 155 'X-RAY DIFFRACTION' ? 
r_nbtor_other            0.088 0.200 ? 96  'X-RAY DIFFRACTION' ? 
r_xyhbond_nbd_refined    0.138 0.200 ? 127 'X-RAY DIFFRACTION' ? 
r_symmetry_vdw_refined   0.171 0.200 ? 2   'X-RAY DIFFRACTION' ? 
r_symmetry_vdw_other     0.224 0.200 ? 19  'X-RAY DIFFRACTION' ? 
r_symmetry_hbond_refined 0.103 0.200 ? 24  'X-RAY DIFFRACTION' ? 
r_scbond_it              2.088 3.000 ? 673 'X-RAY DIFFRACTION' ? 
r_scangle_it             2.576 4.500 ? 712 'X-RAY DIFFRACTION' ? 
# 
_refine_ls_shell.pdbx_total_number_of_bins_used   20 
_refine_ls_shell.d_res_high                       1.190 
_refine_ls_shell.d_res_low                        1.221 
_refine_ls_shell.number_reflns_R_work             1334 
_refine_ls_shell.R_factor_R_work                  0.241 
_refine_ls_shell.percent_reflns_obs               90.42 
_refine_ls_shell.R_factor_R_free                  0.232 
_refine_ls_shell.R_factor_R_free_error            ? 
_refine_ls_shell.percent_reflns_R_free            ? 
_refine_ls_shell.number_reflns_R_free             167 
_refine_ls_shell.number_reflns_all                ? 
_refine_ls_shell.R_factor_all                     ? 
_refine_ls_shell.number_reflns_obs                ? 
_refine_ls_shell.redundancy_reflns_obs            ? 
_refine_ls_shell.pdbx_refine_id                   'X-RAY DIFFRACTION' 
# 
_struct.entry_id                  2FIJ 
_struct.title                     
;Crystal Structure Analysis of the A-DNA Decamer GCGT-2'OMeA-aU-ACGC, with Incorporated 2'-O-Methylated-Adenosine (2'OMeA) and Arabino-Uridine (aU)
;
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        2FIJ 
_struct_keywords.pdbx_keywords   DNA 
_struct_keywords.text            'Arabinonucleic Acid, Sugar Modifications, A-form DNA, DNA' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 1 ? 
C N N 2 ? 
D N N 3 ? 
E N N 3 ? 
F N N 3 ? 
G N N 4 ? 
H N N 4 ? 
# 
_struct_biol.id                    1 
_struct_biol.details               
'The biological assembly is a duplex and corresponds to the crystallographic asymmetric unit, hence no symmetry operators are needed' 
_struct_biol.pdbx_parent_biol_id   ? 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
covale1  covale both ? A DT  4  "O3'" ? ? ? 1_555 A A2M 5  P  ? ? A DT  4  A A2M 5  1_555 ? ? ? ? ? ? ?            1.640 ? ? 
covale2  covale one  ? A A2M 5  "O3'" ? ? ? 1_555 A UAR 6  P  ? ? A A2M 5  A UAR 6  1_555 ? ? ? ? ? ? ?            1.618 ? ? 
covale3  covale both ? A UAR 6  "O3'" ? ? ? 1_555 A DA  7  P  ? ? A UAR 6  A DA  7  1_555 ? ? ? ? ? ? ?            1.810 ? ? 
covale4  covale both ? B DT  4  "O3'" ? ? ? 1_555 B A2M 5  P  ? ? B DT  14 B A2M 15 1_555 ? ? ? ? ? ? ?            1.629 ? ? 
covale5  covale one  ? B A2M 5  "O3'" ? ? ? 1_555 B UAR 6  P  ? ? B A2M 15 B UAR 16 1_555 ? ? ? ? ? ? ?            1.628 ? ? 
covale6  covale both ? B UAR 6  "O3'" ? ? ? 1_555 B DA  7  P  ? ? B UAR 16 B DA  17 1_555 ? ? ? ? ? ? ?            1.836 ? ? 
hydrog1  hydrog ?    ? A DG  1  N1    ? ? ? 1_555 B DC  10 N3 ? ? A DG  1  B DC  20 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog2  hydrog ?    ? A DG  1  N2    ? ? ? 1_555 B DC  10 O2 ? ? A DG  1  B DC  20 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog3  hydrog ?    ? A DG  1  O6    ? ? ? 1_555 B DC  10 N4 ? ? A DG  1  B DC  20 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog4  hydrog ?    ? A DC  2  N3    ? ? ? 1_555 B DG  9  N1 ? ? A DC  2  B DG  19 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog5  hydrog ?    ? A DC  2  N4    ? ? ? 1_555 B DG  9  O6 ? ? A DC  2  B DG  19 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog6  hydrog ?    ? A DC  2  O2    ? ? ? 1_555 B DG  9  N2 ? ? A DC  2  B DG  19 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog7  hydrog ?    ? A DG  3  N1    ? ? ? 1_555 B DC  8  N3 ? ? A DG  3  B DC  18 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog8  hydrog ?    ? A DG  3  N2    ? ? ? 1_555 B DC  8  O2 ? ? A DG  3  B DC  18 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog9  hydrog ?    ? A DG  3  O6    ? ? ? 1_555 B DC  8  N4 ? ? A DG  3  B DC  18 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog10 hydrog ?    ? A DT  4  N3    ? ? ? 1_555 B DA  7  N1 ? ? A DT  4  B DA  17 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog11 hydrog ?    ? A DT  4  O4    ? ? ? 1_555 B DA  7  N6 ? ? A DT  4  B DA  17 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog12 hydrog ?    ? A A2M 5  N1    ? ? ? 1_555 B UAR 6  N3 ? ? A A2M 5  B UAR 16 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog13 hydrog ?    ? A A2M 5  N6    ? ? ? 1_555 B UAR 6  O4 ? ? A A2M 5  B UAR 16 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog14 hydrog ?    ? A UAR 6  N3    ? ? ? 1_555 B A2M 5  N1 ? ? A UAR 6  B A2M 15 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog15 hydrog ?    ? A UAR 6  O4    ? ? ? 1_555 B A2M 5  N6 ? ? A UAR 6  B A2M 15 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog16 hydrog ?    ? A DA  7  N1    ? ? ? 1_555 B DT  4  N3 ? ? A DA  7  B DT  14 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog17 hydrog ?    ? A DA  7  N6    ? ? ? 1_555 B DT  4  O4 ? ? A DA  7  B DT  14 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog18 hydrog ?    ? A DC  8  N3    ? ? ? 1_555 B DG  3  N1 ? ? A DC  8  B DG  13 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog19 hydrog ?    ? A DC  8  N4    ? ? ? 1_555 B DG  3  O6 ? ? A DC  8  B DG  13 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog20 hydrog ?    ? A DC  8  O2    ? ? ? 1_555 B DG  3  N2 ? ? A DC  8  B DG  13 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog21 hydrog ?    ? A DG  9  N1    ? ? ? 1_555 B DC  2  N3 ? ? A DG  9  B DC  12 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog22 hydrog ?    ? A DG  9  N2    ? ? ? 1_555 B DC  2  O2 ? ? A DG  9  B DC  12 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog23 hydrog ?    ? A DG  9  O6    ? ? ? 1_555 B DC  2  N4 ? ? A DG  9  B DC  12 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog24 hydrog ?    ? A DC  10 N3    ? ? ? 1_555 B DG  1  N1 ? ? A DC  10 B DG  11 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog25 hydrog ?    ? A DC  10 N4    ? ? ? 1_555 B DG  1  O6 ? ? A DC  10 B DG  11 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog26 hydrog ?    ? A DC  10 O2    ? ? ? 1_555 B DG  1  N2 ? ? A DC  10 B DG  11 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
# 
loop_
_struct_conn_type.id 
_struct_conn_type.criteria 
_struct_conn_type.reference 
covale ? ? 
hydrog ? ? 
# 
loop_
_struct_site.id 
_struct_site.pdbx_evidence_code 
_struct_site.pdbx_auth_asym_id 
_struct_site.pdbx_auth_comp_id 
_struct_site.pdbx_auth_seq_id 
_struct_site.pdbx_auth_ins_code 
_struct_site.pdbx_num_residues 
_struct_site.details 
AC1 Software A CL  101  ? 4  'BINDING SITE FOR RESIDUE CL A 101'   
AC2 Software A NCO 2211 ? 12 'BINDING SITE FOR RESIDUE NCO A 2211' 
AC3 Software B NCO 2212 ? 12 'BINDING SITE FOR RESIDUE NCO B 2212' 
AC4 Software A NCO 2213 ? 13 'BINDING SITE FOR RESIDUE NCO A 2213' 
# 
loop_
_struct_site_gen.id 
_struct_site_gen.site_id 
_struct_site_gen.pdbx_num_res 
_struct_site_gen.label_comp_id 
_struct_site_gen.label_asym_id 
_struct_site_gen.label_seq_id 
_struct_site_gen.pdbx_auth_ins_code 
_struct_site_gen.auth_comp_id 
_struct_site_gen.auth_asym_id 
_struct_site_gen.auth_seq_id 
_struct_site_gen.label_atom_id 
_struct_site_gen.label_alt_id 
_struct_site_gen.symmetry 
_struct_site_gen.details 
1  AC1 4  A2M A 5 ? A2M A 5    . ? 1_555 ? 
2  AC1 4  NCO E . ? NCO A 2213 . ? 1_555 ? 
3  AC1 4  A2M B 5 ? A2M B 15   . ? 1_555 ? 
4  AC1 4  NCO F . ? NCO B 2212 . ? 1_555 ? 
5  AC2 12 DC  A 2 ? DC  A 2    . ? 1_555 ? 
6  AC2 12 DG  A 3 ? DG  A 3    . ? 1_555 ? 
7  AC2 12 DC  A 8 ? DC  A 8    . ? 4_566 ? 
8  AC2 12 DG  A 9 ? DG  A 9    . ? 4_566 ? 
9  AC2 12 HOH G . ? HOH A 123  . ? 1_555 ? 
10 AC2 12 HOH G . ? HOH A 183  . ? 1_555 ? 
11 AC2 12 HOH G . ? HOH A 186  . ? 1_555 ? 
12 AC2 12 DC  B 2 ? DC  B 12   . ? 1_555 ? 
13 AC2 12 DG  B 3 ? DG  B 13   . ? 1_555 ? 
14 AC2 12 DC  B 8 ? DC  B 18   . ? 3_745 ? 
15 AC2 12 DG  B 9 ? DG  B 19   . ? 3_745 ? 
16 AC2 12 HOH H . ? HOH B 170  . ? 1_555 ? 
17 AC3 12 DT  A 4 ? DT  A 4    . ? 1_555 ? 
18 AC3 12 UAR A 6 ? UAR A 6    . ? 1_555 ? 
19 AC3 12 DA  A 7 ? DA  A 7    . ? 1_555 ? 
20 AC3 12 CL  C . ? CL  A 101  . ? 1_555 ? 
21 AC3 12 HOH G . ? HOH A 106  . ? 1_555 ? 
22 AC3 12 HOH G . ? HOH A 160  . ? 1_555 ? 
23 AC3 12 HOH G . ? HOH A 218  . ? 1_555 ? 
24 AC3 12 DC  B 2 ? DC  B 12   . ? 1_555 ? 
25 AC3 12 DG  B 3 ? DG  B 13   . ? 1_555 ? 
26 AC3 12 DT  B 4 ? DT  B 14   . ? 1_555 ? 
27 AC3 12 HOH H . ? HOH B 104  . ? 1_555 ? 
28 AC3 12 HOH H . ? HOH B 158  . ? 1_555 ? 
29 AC4 13 DC  A 2 ? DC  A 2    . ? 1_555 ? 
30 AC4 13 DG  A 3 ? DG  A 3    . ? 1_555 ? 
31 AC4 13 DT  A 4 ? DT  A 4    . ? 1_555 ? 
32 AC4 13 CL  C . ? CL  A 101  . ? 1_555 ? 
33 AC4 13 HOH G . ? HOH A 102  . ? 1_555 ? 
34 AC4 13 HOH G . ? HOH A 110  . ? 1_555 ? 
35 AC4 13 HOH G . ? HOH A 140  . ? 1_555 ? 
36 AC4 13 DT  B 4 ? DT  B 14   . ? 1_555 ? 
37 AC4 13 UAR B 6 ? UAR B 16   . ? 1_555 ? 
38 AC4 13 DA  B 7 ? DA  B 17   . ? 1_555 ? 
39 AC4 13 HOH H . ? HOH B 111  . ? 1_555 ? 
40 AC4 13 HOH H . ? HOH B 174  . ? 1_555 ? 
41 AC4 13 HOH H . ? HOH B 228  . ? 1_555 ? 
# 
_database_PDB_matrix.entry_id          2FIJ 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_atom_sites.entry_id                    2FIJ 
_atom_sites.fract_transf_matrix[1][1]   0.030982 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.030799 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.014981 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
C  
CL 
CO 
N  
O  
P  
# 
loop_
_database_PDB_caveat.text   
;chirality error at C2' center of UAR
;
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1  DG  1  1  1  DG  G   A . n 
A 1 2  DC  2  2  2  DC  C   A . n 
A 1 3  DG  3  3  3  DG  G   A . n 
A 1 4  DT  4  4  4  DT  T   A . n 
A 1 5  A2M 5  5  5  A2M A2M A . n 
A 1 6  UAR 6  6  6  UAR UAR A . n 
A 1 7  DA  7  7  7  DA  A   A . n 
A 1 8  DC  8  8  8  DC  C   A . n 
A 1 9  DG  9  9  9  DG  G   A . n 
A 1 10 DC  10 10 10 DC  C   A . n 
B 1 1  DG  1  11 11 DG  G   B . n 
B 1 2  DC  2  12 12 DC  C   B . n 
B 1 3  DG  3  13 13 DG  G   B . n 
B 1 4  DT  4  14 14 DT  T   B . n 
B 1 5  A2M 5  15 15 A2M A2M B . n 
B 1 6  UAR 6  16 16 UAR UAR B . n 
B 1 7  DA  7  17 17 DA  A   B . n 
B 1 8  DC  8  18 18 DC  C   B . n 
B 1 9  DG  9  19 19 DG  G   B . n 
B 1 10 DC  10 20 20 DC  C   B . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
C 2 CL  1  101  101  CL  CL  A . 
D 3 NCO 1  2211 2211 NCO NCO A . 
E 3 NCO 1  2213 2213 NCO NCO A . 
F 3 NCO 1  2212 2212 NCO NCO B . 
G 4 HOH 1  102  102  HOH HOH A . 
G 4 HOH 2  103  103  HOH HOH A . 
G 4 HOH 3  106  106  HOH HOH A . 
G 4 HOH 4  109  109  HOH HOH A . 
G 4 HOH 5  110  110  HOH HOH A . 
G 4 HOH 6  112  112  HOH HOH A . 
G 4 HOH 7  117  117  HOH HOH A . 
G 4 HOH 8  119  119  HOH HOH A . 
G 4 HOH 9  122  122  HOH HOH A . 
G 4 HOH 10 123  123  HOH HOH A . 
G 4 HOH 11 124  124  HOH HOH A . 
G 4 HOH 12 125  125  HOH HOH A . 
G 4 HOH 13 126  126  HOH HOH A . 
G 4 HOH 14 128  128  HOH HOH A . 
G 4 HOH 15 129  129  HOH HOH A . 
G 4 HOH 16 131  131  HOH HOH A . 
G 4 HOH 17 132  132  HOH HOH A . 
G 4 HOH 18 133  133  HOH HOH A . 
G 4 HOH 19 134  134  HOH HOH A . 
G 4 HOH 20 135  135  HOH HOH A . 
G 4 HOH 21 136  136  HOH HOH A . 
G 4 HOH 22 137  137  HOH HOH A . 
G 4 HOH 23 138  138  HOH HOH A . 
G 4 HOH 24 139  139  HOH HOH A . 
G 4 HOH 25 140  140  HOH HOH A . 
G 4 HOH 26 146  146  HOH HOH A . 
G 4 HOH 27 154  154  HOH HOH A . 
G 4 HOH 28 155  155  HOH HOH A . 
G 4 HOH 29 156  156  HOH HOH A . 
G 4 HOH 30 157  157  HOH HOH A . 
G 4 HOH 31 160  160  HOH HOH A . 
G 4 HOH 32 161  161  HOH HOH A . 
G 4 HOH 33 162  162  HOH HOH A . 
G 4 HOH 34 164  164  HOH HOH A . 
G 4 HOH 35 166  166  HOH HOH A . 
G 4 HOH 36 167  167  HOH HOH A . 
G 4 HOH 37 171  171  HOH HOH A . 
G 4 HOH 38 172  172  HOH HOH A . 
G 4 HOH 39 175  175  HOH HOH A . 
G 4 HOH 40 182  182  HOH HOH A . 
G 4 HOH 41 183  183  HOH HOH A . 
G 4 HOH 42 186  186  HOH HOH A . 
G 4 HOH 43 187  187  HOH HOH A . 
G 4 HOH 44 189  189  HOH HOH A . 
G 4 HOH 45 191  191  HOH HOH A . 
G 4 HOH 46 192  192  HOH HOH A . 
G 4 HOH 47 193  193  HOH HOH A . 
G 4 HOH 48 194  194  HOH HOH A . 
G 4 HOH 49 196  196  HOH HOH A . 
G 4 HOH 50 197  197  HOH HOH A . 
G 4 HOH 51 203  203  HOH HOH A . 
G 4 HOH 52 208  208  HOH HOH A . 
G 4 HOH 53 214  214  HOH HOH A . 
G 4 HOH 54 215  215  HOH HOH A . 
G 4 HOH 55 216  216  HOH HOH A . 
G 4 HOH 56 217  217  HOH HOH A . 
G 4 HOH 57 218  218  HOH HOH A . 
G 4 HOH 58 219  219  HOH HOH A . 
G 4 HOH 59 220  220  HOH HOH A . 
G 4 HOH 60 221  221  HOH HOH A . 
G 4 HOH 61 224  224  HOH HOH A . 
G 4 HOH 62 226  226  HOH HOH A . 
G 4 HOH 63 227  227  HOH HOH A . 
H 4 HOH 1  104  104  HOH HOH B . 
H 4 HOH 2  105  105  HOH HOH B . 
H 4 HOH 3  107  107  HOH HOH B . 
H 4 HOH 4  108  108  HOH HOH B . 
H 4 HOH 5  111  111  HOH HOH B . 
H 4 HOH 6  113  113  HOH HOH B . 
H 4 HOH 7  114  114  HOH HOH B . 
H 4 HOH 8  115  115  HOH HOH B . 
H 4 HOH 9  116  116  HOH HOH B . 
H 4 HOH 10 118  118  HOH HOH B . 
H 4 HOH 11 120  120  HOH HOH B . 
H 4 HOH 12 121  121  HOH HOH B . 
H 4 HOH 13 127  127  HOH HOH B . 
H 4 HOH 14 130  130  HOH HOH B . 
H 4 HOH 15 141  141  HOH HOH B . 
H 4 HOH 16 142  142  HOH HOH B . 
H 4 HOH 17 143  143  HOH HOH B . 
H 4 HOH 18 144  144  HOH HOH B . 
H 4 HOH 19 145  145  HOH HOH B . 
H 4 HOH 20 147  147  HOH HOH B . 
H 4 HOH 21 148  148  HOH HOH B . 
H 4 HOH 22 149  149  HOH HOH B . 
H 4 HOH 23 150  150  HOH HOH B . 
H 4 HOH 24 151  151  HOH HOH B . 
H 4 HOH 25 152  152  HOH HOH B . 
H 4 HOH 26 153  153  HOH HOH B . 
H 4 HOH 27 158  158  HOH HOH B . 
H 4 HOH 28 159  159  HOH HOH B . 
H 4 HOH 29 163  163  HOH HOH B . 
H 4 HOH 30 165  165  HOH HOH B . 
H 4 HOH 31 168  168  HOH HOH B . 
H 4 HOH 32 169  169  HOH HOH B . 
H 4 HOH 33 170  170  HOH HOH B . 
H 4 HOH 34 173  173  HOH HOH B . 
H 4 HOH 35 174  174  HOH HOH B . 
H 4 HOH 36 176  176  HOH HOH B . 
H 4 HOH 37 177  177  HOH HOH B . 
H 4 HOH 38 178  178  HOH HOH B . 
H 4 HOH 39 179  179  HOH HOH B . 
H 4 HOH 40 180  180  HOH HOH B . 
H 4 HOH 41 181  181  HOH HOH B . 
H 4 HOH 42 184  184  HOH HOH B . 
H 4 HOH 43 185  185  HOH HOH B . 
H 4 HOH 44 188  188  HOH HOH B . 
H 4 HOH 45 190  190  HOH HOH B . 
H 4 HOH 46 195  195  HOH HOH B . 
H 4 HOH 47 198  198  HOH HOH B . 
H 4 HOH 48 199  199  HOH HOH B . 
H 4 HOH 49 200  200  HOH HOH B . 
H 4 HOH 50 201  201  HOH HOH B . 
H 4 HOH 51 202  202  HOH HOH B . 
H 4 HOH 52 204  204  HOH HOH B . 
H 4 HOH 53 205  205  HOH HOH B . 
H 4 HOH 54 206  206  HOH HOH B . 
H 4 HOH 55 207  207  HOH HOH B . 
H 4 HOH 56 209  209  HOH HOH B . 
H 4 HOH 57 210  210  HOH HOH B . 
H 4 HOH 58 211  211  HOH HOH B . 
H 4 HOH 59 212  212  HOH HOH B . 
H 4 HOH 60 213  213  HOH HOH B . 
H 4 HOH 61 222  222  HOH HOH B . 
H 4 HOH 62 223  223  HOH HOH B . 
H 4 HOH 63 225  225  HOH HOH B . 
H 4 HOH 64 228  228  HOH HOH B . 
H 4 HOH 65 229  229  HOH HOH B . 
# 
loop_
_pdbx_struct_mod_residue.id 
_pdbx_struct_mod_residue.label_asym_id 
_pdbx_struct_mod_residue.label_comp_id 
_pdbx_struct_mod_residue.label_seq_id 
_pdbx_struct_mod_residue.auth_asym_id 
_pdbx_struct_mod_residue.auth_comp_id 
_pdbx_struct_mod_residue.auth_seq_id 
_pdbx_struct_mod_residue.PDB_ins_code 
_pdbx_struct_mod_residue.parent_comp_id 
_pdbx_struct_mod_residue.details 
1 A A2M 5 A A2M 5  ? A ?                               
2 A UAR 6 A UAR 6  ? U 
;URACIL ARABINOSE-5'-PHOSPHATE
;
3 B A2M 5 B A2M 15 ? A ?                               
4 B UAR 6 B UAR 16 ? U 
;URACIL ARABINOSE-5'-PHOSPHATE
;
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C,D,E,F,G,H 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2006-05-23 
2 'Structure model' 1 1 2008-05-01 
3 'Structure model' 1 2 2011-07-13 
4 'Structure model' 1 3 2011-12-28 
5 'Structure model' 1 4 2017-10-18 
6 'Structure model' 1 5 2023-08-30 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Version format compliance' 
2 3 'Structure model' 'Non-polymer description'   
3 3 'Structure model' 'Version format compliance' 
4 4 'Structure model' Advisory                    
5 5 'Structure model' 'Refinement description'    
6 6 'Structure model' 'Data collection'           
7 6 'Structure model' 'Database references'       
8 6 'Structure model' 'Derived calculations'      
9 6 'Structure model' 'Refinement description'    
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 5 'Structure model' software                      
2 6 'Structure model' chem_comp_atom                
3 6 'Structure model' chem_comp_bond                
4 6 'Structure model' database_2                    
5 6 'Structure model' pdbx_initial_refinement_model 
6 6 'Structure model' struct_conn                   
7 6 'Structure model' struct_site                   
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1 5 'Structure model' '_software.classification'            
2 5 'Structure model' '_software.name'                      
3 6 'Structure model' '_database_2.pdbx_DOI'                
4 6 'Structure model' '_database_2.pdbx_database_accession' 
5 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 
6 6 'Structure model' '_struct_site.pdbx_auth_asym_id'      
7 6 'Structure model' '_struct_site.pdbx_auth_comp_id'      
8 6 'Structure model' '_struct_site.pdbx_auth_seq_id'       
# 
_pdbx_refine_tls.id               1 
_pdbx_refine_tls.details          ? 
_pdbx_refine_tls.method           refined 
_pdbx_refine_tls.origin_x         0.0000 
_pdbx_refine_tls.origin_y         0.0000 
_pdbx_refine_tls.origin_z         0.0000 
_pdbx_refine_tls.T[1][1]          0.0000 
_pdbx_refine_tls.T[2][2]          0.0000 
_pdbx_refine_tls.T[3][3]          0.0000 
_pdbx_refine_tls.T[1][2]          0.0000 
_pdbx_refine_tls.T[1][3]          0.0000 
_pdbx_refine_tls.T[2][3]          0.0000 
_pdbx_refine_tls.L[1][1]          0.0000 
_pdbx_refine_tls.L[2][2]          0.0000 
_pdbx_refine_tls.L[3][3]          0.0000 
_pdbx_refine_tls.L[1][2]          0.0000 
_pdbx_refine_tls.L[1][3]          0.0000 
_pdbx_refine_tls.L[2][3]          0.0000 
_pdbx_refine_tls.S[1][1]          0.0000 
_pdbx_refine_tls.S[1][2]          0.0000 
_pdbx_refine_tls.S[1][3]          0.0000 
_pdbx_refine_tls.S[2][1]          0.0000 
_pdbx_refine_tls.S[2][2]          0.0000 
_pdbx_refine_tls.S[2][3]          0.0000 
_pdbx_refine_tls.S[3][1]          0.0000 
_pdbx_refine_tls.S[3][2]          0.0000 
_pdbx_refine_tls.S[3][3]          0.0000 
_pdbx_refine_tls.pdbx_refine_id   'X-RAY DIFFRACTION' 
# 
loop_
_pdbx_refine_tls_group.id 
_pdbx_refine_tls_group.refine_tls_id 
_pdbx_refine_tls_group.beg_auth_asym_id 
_pdbx_refine_tls_group.beg_auth_seq_id 
_pdbx_refine_tls_group.beg_label_asym_id 
_pdbx_refine_tls_group.beg_label_seq_id 
_pdbx_refine_tls_group.end_auth_asym_id 
_pdbx_refine_tls_group.end_auth_seq_id 
_pdbx_refine_tls_group.end_label_asym_id 
_pdbx_refine_tls_group.end_label_seq_id 
_pdbx_refine_tls_group.selection 
_pdbx_refine_tls_group.pdbx_refine_id 
_pdbx_refine_tls_group.selection_details 
1 1 A 1  A 1 A 10 A 10 ? 'X-RAY DIFFRACTION' ? 
2 1 B 11 B 1 B 20 B 10 ? 'X-RAY DIFFRACTION' ? 
# 
loop_
_software.name 
_software.classification 
_software.version 
_software.citation_id 
_software.pdbx_ordinal 
REFMAC refinement        5.2.0005 ? 1 
MAR345 'data collection' .        ? 2 
XDS    'data scaling'    .        ? 3 
EPMR   phasing           .        ? 4 
# 
loop_
_pdbx_validate_rmsd_bond.id 
_pdbx_validate_rmsd_bond.PDB_model_num 
_pdbx_validate_rmsd_bond.auth_atom_id_1 
_pdbx_validate_rmsd_bond.auth_asym_id_1 
_pdbx_validate_rmsd_bond.auth_comp_id_1 
_pdbx_validate_rmsd_bond.auth_seq_id_1 
_pdbx_validate_rmsd_bond.PDB_ins_code_1 
_pdbx_validate_rmsd_bond.label_alt_id_1 
_pdbx_validate_rmsd_bond.auth_atom_id_2 
_pdbx_validate_rmsd_bond.auth_asym_id_2 
_pdbx_validate_rmsd_bond.auth_comp_id_2 
_pdbx_validate_rmsd_bond.auth_seq_id_2 
_pdbx_validate_rmsd_bond.PDB_ins_code_2 
_pdbx_validate_rmsd_bond.label_alt_id_2 
_pdbx_validate_rmsd_bond.bond_value 
_pdbx_validate_rmsd_bond.bond_target_value 
_pdbx_validate_rmsd_bond.bond_deviation 
_pdbx_validate_rmsd_bond.bond_standard_deviation 
_pdbx_validate_rmsd_bond.linker_flag 
1 1 "O3'" A UAR 6  ? ? P     A DA 7  ? ? 1.810 1.607 0.203  0.012 Y 
2 1 "O3'" B UAR 16 ? ? P     B DA 17 ? ? 1.836 1.607 0.229  0.012 Y 
3 1 "O3'" B DG  19 ? ? "C3'" B DG 19 ? ? 1.375 1.419 -0.044 0.006 N 
# 
loop_
_pdbx_validate_rmsd_angle.id 
_pdbx_validate_rmsd_angle.PDB_model_num 
_pdbx_validate_rmsd_angle.auth_atom_id_1 
_pdbx_validate_rmsd_angle.auth_asym_id_1 
_pdbx_validate_rmsd_angle.auth_comp_id_1 
_pdbx_validate_rmsd_angle.auth_seq_id_1 
_pdbx_validate_rmsd_angle.PDB_ins_code_1 
_pdbx_validate_rmsd_angle.label_alt_id_1 
_pdbx_validate_rmsd_angle.auth_atom_id_2 
_pdbx_validate_rmsd_angle.auth_asym_id_2 
_pdbx_validate_rmsd_angle.auth_comp_id_2 
_pdbx_validate_rmsd_angle.auth_seq_id_2 
_pdbx_validate_rmsd_angle.PDB_ins_code_2 
_pdbx_validate_rmsd_angle.label_alt_id_2 
_pdbx_validate_rmsd_angle.auth_atom_id_3 
_pdbx_validate_rmsd_angle.auth_asym_id_3 
_pdbx_validate_rmsd_angle.auth_comp_id_3 
_pdbx_validate_rmsd_angle.auth_seq_id_3 
_pdbx_validate_rmsd_angle.PDB_ins_code_3 
_pdbx_validate_rmsd_angle.label_alt_id_3 
_pdbx_validate_rmsd_angle.angle_value 
_pdbx_validate_rmsd_angle.angle_target_value 
_pdbx_validate_rmsd_angle.angle_deviation 
_pdbx_validate_rmsd_angle.angle_standard_deviation 
_pdbx_validate_rmsd_angle.linker_flag 
1 1 "C1'" A DC 8  ? ? "O4'" A DC 8  ? ? "C4'" A DC 8  ? ? 103.19 110.10 -6.91 1.00 N 
2 1 "O4'" A DC 8  ? ? "C1'" A DC 8  ? ? N1    A DC 8  ? ? 111.06 108.30 2.76  0.30 N 
3 1 "O4'" A DG 9  ? ? "C1'" A DG 9  ? ? N9    A DG 9  ? ? 112.01 108.30 3.71  0.30 N 
4 1 "C1'" B DC 18 ? ? "O4'" B DC 18 ? ? "C4'" B DC 18 ? ? 103.21 110.10 -6.89 1.00 N 
5 1 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1    B DC 18 ? ? 111.16 108.30 2.86  0.30 N 
6 1 "O4'" B DG 19 ? ? "C1'" B DG 19 ? ? N9    B DG 19 ? ? 112.46 108.30 4.16  0.30 N 
# 
loop_
_pdbx_validate_polymer_linkage.id 
_pdbx_validate_polymer_linkage.PDB_model_num 
_pdbx_validate_polymer_linkage.auth_atom_id_1 
_pdbx_validate_polymer_linkage.auth_asym_id_1 
_pdbx_validate_polymer_linkage.auth_comp_id_1 
_pdbx_validate_polymer_linkage.auth_seq_id_1 
_pdbx_validate_polymer_linkage.PDB_ins_code_1 
_pdbx_validate_polymer_linkage.label_alt_id_1 
_pdbx_validate_polymer_linkage.auth_atom_id_2 
_pdbx_validate_polymer_linkage.auth_asym_id_2 
_pdbx_validate_polymer_linkage.auth_comp_id_2 
_pdbx_validate_polymer_linkage.auth_seq_id_2 
_pdbx_validate_polymer_linkage.PDB_ins_code_2 
_pdbx_validate_polymer_linkage.label_alt_id_2 
_pdbx_validate_polymer_linkage.dist 
1 1 "O3'" A UAR 6  ? ? P A DA 7  ? ? 1.81 
2 1 "O3'" B UAR 16 ? ? P B DA 17 ? ? 1.84 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
A2M P      P  N N 1   
A2M OP1    O  N N 2   
A2M OP3    O  N N 3   
A2M "O5'"  O  N N 4   
A2M "C5'"  C  N N 5   
A2M "C4'"  C  N R 6   
A2M "O4'"  O  N N 7   
A2M "C3'"  C  N R 8   
A2M "O3'"  O  N N 9   
A2M "C2'"  C  N R 10  
A2M "O2'"  O  N N 11  
A2M "C1'"  C  N R 12  
A2M "CM'"  C  N N 13  
A2M N9     N  Y N 14  
A2M C8     C  Y N 15  
A2M N7     N  Y N 16  
A2M C5     C  Y N 17  
A2M C6     C  Y N 18  
A2M N6     N  N N 19  
A2M N1     N  Y N 20  
A2M C2     C  Y N 21  
A2M N3     N  Y N 22  
A2M C4     C  Y N 23  
A2M HOP3   H  N N 24  
A2M "H5'"  H  N N 25  
A2M "H5''" H  N N 26  
A2M "H4'"  H  N N 27  
A2M "H3'"  H  N N 28  
A2M "HO3'" H  N N 29  
A2M "H2'"  H  N N 30  
A2M "H1'"  H  N N 31  
A2M "HM'1" H  N N 32  
A2M "HM'2" H  N N 33  
A2M "HM'3" H  N N 34  
A2M H8     H  N N 35  
A2M H61    H  N N 36  
A2M H62    H  N N 37  
A2M H2     H  N N 38  
A2M OP2    O  N N 39  
A2M HOP2   H  N N 40  
CL  CL     CL N N 41  
DA  OP3    O  N N 42  
DA  P      P  N N 43  
DA  OP1    O  N N 44  
DA  OP2    O  N N 45  
DA  "O5'"  O  N N 46  
DA  "C5'"  C  N N 47  
DA  "C4'"  C  N R 48  
DA  "O4'"  O  N N 49  
DA  "C3'"  C  N S 50  
DA  "O3'"  O  N N 51  
DA  "C2'"  C  N N 52  
DA  "C1'"  C  N R 53  
DA  N9     N  Y N 54  
DA  C8     C  Y N 55  
DA  N7     N  Y N 56  
DA  C5     C  Y N 57  
DA  C6     C  Y N 58  
DA  N6     N  N N 59  
DA  N1     N  Y N 60  
DA  C2     C  Y N 61  
DA  N3     N  Y N 62  
DA  C4     C  Y N 63  
DA  HOP3   H  N N 64  
DA  HOP2   H  N N 65  
DA  "H5'"  H  N N 66  
DA  "H5''" H  N N 67  
DA  "H4'"  H  N N 68  
DA  "H3'"  H  N N 69  
DA  "HO3'" H  N N 70  
DA  "H2'"  H  N N 71  
DA  "H2''" H  N N 72  
DA  "H1'"  H  N N 73  
DA  H8     H  N N 74  
DA  H61    H  N N 75  
DA  H62    H  N N 76  
DA  H2     H  N N 77  
DC  OP3    O  N N 78  
DC  P      P  N N 79  
DC  OP1    O  N N 80  
DC  OP2    O  N N 81  
DC  "O5'"  O  N N 82  
DC  "C5'"  C  N N 83  
DC  "C4'"  C  N R 84  
DC  "O4'"  O  N N 85  
DC  "C3'"  C  N S 86  
DC  "O3'"  O  N N 87  
DC  "C2'"  C  N N 88  
DC  "C1'"  C  N R 89  
DC  N1     N  N N 90  
DC  C2     C  N N 91  
DC  O2     O  N N 92  
DC  N3     N  N N 93  
DC  C4     C  N N 94  
DC  N4     N  N N 95  
DC  C5     C  N N 96  
DC  C6     C  N N 97  
DC  HOP3   H  N N 98  
DC  HOP2   H  N N 99  
DC  "H5'"  H  N N 100 
DC  "H5''" H  N N 101 
DC  "H4'"  H  N N 102 
DC  "H3'"  H  N N 103 
DC  "HO3'" H  N N 104 
DC  "H2'"  H  N N 105 
DC  "H2''" H  N N 106 
DC  "H1'"  H  N N 107 
DC  H41    H  N N 108 
DC  H42    H  N N 109 
DC  H5     H  N N 110 
DC  H6     H  N N 111 
DG  OP3    O  N N 112 
DG  P      P  N N 113 
DG  OP1    O  N N 114 
DG  OP2    O  N N 115 
DG  "O5'"  O  N N 116 
DG  "C5'"  C  N N 117 
DG  "C4'"  C  N R 118 
DG  "O4'"  O  N N 119 
DG  "C3'"  C  N S 120 
DG  "O3'"  O  N N 121 
DG  "C2'"  C  N N 122 
DG  "C1'"  C  N R 123 
DG  N9     N  Y N 124 
DG  C8     C  Y N 125 
DG  N7     N  Y N 126 
DG  C5     C  Y N 127 
DG  C6     C  N N 128 
DG  O6     O  N N 129 
DG  N1     N  N N 130 
DG  C2     C  N N 131 
DG  N2     N  N N 132 
DG  N3     N  N N 133 
DG  C4     C  Y N 134 
DG  HOP3   H  N N 135 
DG  HOP2   H  N N 136 
DG  "H5'"  H  N N 137 
DG  "H5''" H  N N 138 
DG  "H4'"  H  N N 139 
DG  "H3'"  H  N N 140 
DG  "HO3'" H  N N 141 
DG  "H2'"  H  N N 142 
DG  "H2''" H  N N 143 
DG  "H1'"  H  N N 144 
DG  H8     H  N N 145 
DG  H1     H  N N 146 
DG  H21    H  N N 147 
DG  H22    H  N N 148 
DT  OP3    O  N N 149 
DT  P      P  N N 150 
DT  OP1    O  N N 151 
DT  OP2    O  N N 152 
DT  "O5'"  O  N N 153 
DT  "C5'"  C  N N 154 
DT  "C4'"  C  N R 155 
DT  "O4'"  O  N N 156 
DT  "C3'"  C  N S 157 
DT  "O3'"  O  N N 158 
DT  "C2'"  C  N N 159 
DT  "C1'"  C  N R 160 
DT  N1     N  N N 161 
DT  C2     C  N N 162 
DT  O2     O  N N 163 
DT  N3     N  N N 164 
DT  C4     C  N N 165 
DT  O4     O  N N 166 
DT  C5     C  N N 167 
DT  C7     C  N N 168 
DT  C6     C  N N 169 
DT  HOP3   H  N N 170 
DT  HOP2   H  N N 171 
DT  "H5'"  H  N N 172 
DT  "H5''" H  N N 173 
DT  "H4'"  H  N N 174 
DT  "H3'"  H  N N 175 
DT  "HO3'" H  N N 176 
DT  "H2'"  H  N N 177 
DT  "H2''" H  N N 178 
DT  "H1'"  H  N N 179 
DT  H3     H  N N 180 
DT  H71    H  N N 181 
DT  H72    H  N N 182 
DT  H73    H  N N 183 
DT  H6     H  N N 184 
HOH O      O  N N 185 
HOH H1     H  N N 186 
HOH H2     H  N N 187 
NCO CO     CO N N 188 
NCO N1     N  N N 189 
NCO N2     N  N N 190 
NCO N3     N  N N 191 
NCO N4     N  N N 192 
NCO N5     N  N N 193 
NCO N6     N  N N 194 
NCO HN11   H  N N 195 
NCO HN12   H  N N 196 
NCO HN13   H  N N 197 
NCO HN21   H  N N 198 
NCO HN22   H  N N 199 
NCO HN23   H  N N 200 
NCO HN31   H  N N 201 
NCO HN32   H  N N 202 
NCO HN33   H  N N 203 
NCO HN41   H  N N 204 
NCO HN42   H  N N 205 
NCO HN43   H  N N 206 
NCO HN51   H  N N 207 
NCO HN52   H  N N 208 
NCO HN53   H  N N 209 
NCO HN61   H  N N 210 
NCO HN62   H  N N 211 
NCO HN63   H  N N 212 
UAR OP3    O  N N 213 
UAR P      P  N N 214 
UAR OP1    O  N N 215 
UAR OP2    O  N N 216 
UAR "O5'"  O  N N 217 
UAR "C5'"  C  N N 218 
UAR "C4'"  C  N R 219 
UAR "O4'"  O  N N 220 
UAR "C3'"  C  N S 221 
UAR "O3'"  O  N N 222 
UAR "C2'"  C  N S 223 
UAR "O2'"  O  N N 224 
UAR "C1'"  C  N R 225 
UAR N1     N  N N 226 
UAR C2     C  N N 227 
UAR O2     O  N N 228 
UAR N3     N  N N 229 
UAR C4     C  N N 230 
UAR O4     O  N N 231 
UAR C5     C  N N 232 
UAR C6     C  N N 233 
UAR HOP3   H  N N 234 
UAR HOP2   H  N N 235 
UAR "H5'"  H  N N 236 
UAR "H5''" H  N N 237 
UAR "H4'"  H  N N 238 
UAR "H3'"  H  N N 239 
UAR "HO3'" H  N N 240 
UAR "H2'"  H  N N 241 
UAR "HO2'" H  N N 242 
UAR "H1'"  H  N N 243 
UAR H3     H  N N 244 
UAR H5     H  N N 245 
UAR H6     H  N N 246 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A2M P     OP1    doub N N 1   
A2M P     OP3    sing N N 2   
A2M P     "O5'"  sing N N 3   
A2M OP3   HOP3   sing N N 4   
A2M "O5'" "C5'"  sing N N 5   
A2M "C5'" "C4'"  sing N N 6   
A2M "C5'" "H5'"  sing N N 7   
A2M "C5'" "H5''" sing N N 8   
A2M "C4'" "O4'"  sing N N 9   
A2M "C4'" "C3'"  sing N N 10  
A2M "C4'" "H4'"  sing N N 11  
A2M "O4'" "C1'"  sing N N 12  
A2M "C3'" "O3'"  sing N N 13  
A2M "C3'" "C2'"  sing N N 14  
A2M "C3'" "H3'"  sing N N 15  
A2M "O3'" "HO3'" sing N N 16  
A2M "C2'" "O2'"  sing N N 17  
A2M "C2'" "C1'"  sing N N 18  
A2M "C2'" "H2'"  sing N N 19  
A2M "O2'" "CM'"  sing N N 20  
A2M "C1'" N9     sing N N 21  
A2M "C1'" "H1'"  sing N N 22  
A2M "CM'" "HM'1" sing N N 23  
A2M "CM'" "HM'2" sing N N 24  
A2M "CM'" "HM'3" sing N N 25  
A2M N9    C8     sing Y N 26  
A2M N9    C4     sing Y N 27  
A2M C8    N7     doub Y N 28  
A2M C8    H8     sing N N 29  
A2M N7    C5     sing Y N 30  
A2M C5    C6     sing Y N 31  
A2M C5    C4     doub Y N 32  
A2M C6    N6     sing N N 33  
A2M C6    N1     doub Y N 34  
A2M N6    H61    sing N N 35  
A2M N6    H62    sing N N 36  
A2M N1    C2     sing Y N 37  
A2M C2    N3     doub Y N 38  
A2M C2    H2     sing N N 39  
A2M N3    C4     sing Y N 40  
A2M P     OP2    sing N N 41  
A2M OP2   HOP2   sing N N 42  
DA  OP3   P      sing N N 43  
DA  OP3   HOP3   sing N N 44  
DA  P     OP1    doub N N 45  
DA  P     OP2    sing N N 46  
DA  P     "O5'"  sing N N 47  
DA  OP2   HOP2   sing N N 48  
DA  "O5'" "C5'"  sing N N 49  
DA  "C5'" "C4'"  sing N N 50  
DA  "C5'" "H5'"  sing N N 51  
DA  "C5'" "H5''" sing N N 52  
DA  "C4'" "O4'"  sing N N 53  
DA  "C4'" "C3'"  sing N N 54  
DA  "C4'" "H4'"  sing N N 55  
DA  "O4'" "C1'"  sing N N 56  
DA  "C3'" "O3'"  sing N N 57  
DA  "C3'" "C2'"  sing N N 58  
DA  "C3'" "H3'"  sing N N 59  
DA  "O3'" "HO3'" sing N N 60  
DA  "C2'" "C1'"  sing N N 61  
DA  "C2'" "H2'"  sing N N 62  
DA  "C2'" "H2''" sing N N 63  
DA  "C1'" N9     sing N N 64  
DA  "C1'" "H1'"  sing N N 65  
DA  N9    C8     sing Y N 66  
DA  N9    C4     sing Y N 67  
DA  C8    N7     doub Y N 68  
DA  C8    H8     sing N N 69  
DA  N7    C5     sing Y N 70  
DA  C5    C6     sing Y N 71  
DA  C5    C4     doub Y N 72  
DA  C6    N6     sing N N 73  
DA  C6    N1     doub Y N 74  
DA  N6    H61    sing N N 75  
DA  N6    H62    sing N N 76  
DA  N1    C2     sing Y N 77  
DA  C2    N3     doub Y N 78  
DA  C2    H2     sing N N 79  
DA  N3    C4     sing Y N 80  
DC  OP3   P      sing N N 81  
DC  OP3   HOP3   sing N N 82  
DC  P     OP1    doub N N 83  
DC  P     OP2    sing N N 84  
DC  P     "O5'"  sing N N 85  
DC  OP2   HOP2   sing N N 86  
DC  "O5'" "C5'"  sing N N 87  
DC  "C5'" "C4'"  sing N N 88  
DC  "C5'" "H5'"  sing N N 89  
DC  "C5'" "H5''" sing N N 90  
DC  "C4'" "O4'"  sing N N 91  
DC  "C4'" "C3'"  sing N N 92  
DC  "C4'" "H4'"  sing N N 93  
DC  "O4'" "C1'"  sing N N 94  
DC  "C3'" "O3'"  sing N N 95  
DC  "C3'" "C2'"  sing N N 96  
DC  "C3'" "H3'"  sing N N 97  
DC  "O3'" "HO3'" sing N N 98  
DC  "C2'" "C1'"  sing N N 99  
DC  "C2'" "H2'"  sing N N 100 
DC  "C2'" "H2''" sing N N 101 
DC  "C1'" N1     sing N N 102 
DC  "C1'" "H1'"  sing N N 103 
DC  N1    C2     sing N N 104 
DC  N1    C6     sing N N 105 
DC  C2    O2     doub N N 106 
DC  C2    N3     sing N N 107 
DC  N3    C4     doub N N 108 
DC  C4    N4     sing N N 109 
DC  C4    C5     sing N N 110 
DC  N4    H41    sing N N 111 
DC  N4    H42    sing N N 112 
DC  C5    C6     doub N N 113 
DC  C5    H5     sing N N 114 
DC  C6    H6     sing N N 115 
DG  OP3   P      sing N N 116 
DG  OP3   HOP3   sing N N 117 
DG  P     OP1    doub N N 118 
DG  P     OP2    sing N N 119 
DG  P     "O5'"  sing N N 120 
DG  OP2   HOP2   sing N N 121 
DG  "O5'" "C5'"  sing N N 122 
DG  "C5'" "C4'"  sing N N 123 
DG  "C5'" "H5'"  sing N N 124 
DG  "C5'" "H5''" sing N N 125 
DG  "C4'" "O4'"  sing N N 126 
DG  "C4'" "C3'"  sing N N 127 
DG  "C4'" "H4'"  sing N N 128 
DG  "O4'" "C1'"  sing N N 129 
DG  "C3'" "O3'"  sing N N 130 
DG  "C3'" "C2'"  sing N N 131 
DG  "C3'" "H3'"  sing N N 132 
DG  "O3'" "HO3'" sing N N 133 
DG  "C2'" "C1'"  sing N N 134 
DG  "C2'" "H2'"  sing N N 135 
DG  "C2'" "H2''" sing N N 136 
DG  "C1'" N9     sing N N 137 
DG  "C1'" "H1'"  sing N N 138 
DG  N9    C8     sing Y N 139 
DG  N9    C4     sing Y N 140 
DG  C8    N7     doub Y N 141 
DG  C8    H8     sing N N 142 
DG  N7    C5     sing Y N 143 
DG  C5    C6     sing N N 144 
DG  C5    C4     doub Y N 145 
DG  C6    O6     doub N N 146 
DG  C6    N1     sing N N 147 
DG  N1    C2     sing N N 148 
DG  N1    H1     sing N N 149 
DG  C2    N2     sing N N 150 
DG  C2    N3     doub N N 151 
DG  N2    H21    sing N N 152 
DG  N2    H22    sing N N 153 
DG  N3    C4     sing N N 154 
DT  OP3   P      sing N N 155 
DT  OP3   HOP3   sing N N 156 
DT  P     OP1    doub N N 157 
DT  P     OP2    sing N N 158 
DT  P     "O5'"  sing N N 159 
DT  OP2   HOP2   sing N N 160 
DT  "O5'" "C5'"  sing N N 161 
DT  "C5'" "C4'"  sing N N 162 
DT  "C5'" "H5'"  sing N N 163 
DT  "C5'" "H5''" sing N N 164 
DT  "C4'" "O4'"  sing N N 165 
DT  "C4'" "C3'"  sing N N 166 
DT  "C4'" "H4'"  sing N N 167 
DT  "O4'" "C1'"  sing N N 168 
DT  "C3'" "O3'"  sing N N 169 
DT  "C3'" "C2'"  sing N N 170 
DT  "C3'" "H3'"  sing N N 171 
DT  "O3'" "HO3'" sing N N 172 
DT  "C2'" "C1'"  sing N N 173 
DT  "C2'" "H2'"  sing N N 174 
DT  "C2'" "H2''" sing N N 175 
DT  "C1'" N1     sing N N 176 
DT  "C1'" "H1'"  sing N N 177 
DT  N1    C2     sing N N 178 
DT  N1    C6     sing N N 179 
DT  C2    O2     doub N N 180 
DT  C2    N3     sing N N 181 
DT  N3    C4     sing N N 182 
DT  N3    H3     sing N N 183 
DT  C4    O4     doub N N 184 
DT  C4    C5     sing N N 185 
DT  C5    C7     sing N N 186 
DT  C5    C6     doub N N 187 
DT  C7    H71    sing N N 188 
DT  C7    H72    sing N N 189 
DT  C7    H73    sing N N 190 
DT  C6    H6     sing N N 191 
HOH O     H1     sing N N 192 
HOH O     H2     sing N N 193 
NCO CO    N1     sing N N 194 
NCO CO    N2     sing N N 195 
NCO CO    N3     sing N N 196 
NCO CO    N4     sing N N 197 
NCO CO    N5     sing N N 198 
NCO CO    N6     sing N N 199 
NCO N1    HN11   sing N N 200 
NCO N1    HN12   sing N N 201 
NCO N1    HN13   sing N N 202 
NCO N2    HN21   sing N N 203 
NCO N2    HN22   sing N N 204 
NCO N2    HN23   sing N N 205 
NCO N3    HN31   sing N N 206 
NCO N3    HN32   sing N N 207 
NCO N3    HN33   sing N N 208 
NCO N4    HN41   sing N N 209 
NCO N4    HN42   sing N N 210 
NCO N4    HN43   sing N N 211 
NCO N5    HN51   sing N N 212 
NCO N5    HN52   sing N N 213 
NCO N5    HN53   sing N N 214 
NCO N6    HN61   sing N N 215 
NCO N6    HN62   sing N N 216 
NCO N6    HN63   sing N N 217 
UAR OP3   P      sing N N 218 
UAR OP3   HOP3   sing N N 219 
UAR P     OP1    doub N N 220 
UAR P     OP2    sing N N 221 
UAR P     "O5'"  sing N N 222 
UAR OP2   HOP2   sing N N 223 
UAR "O5'" "C5'"  sing N N 224 
UAR "C5'" "C4'"  sing N N 225 
UAR "C5'" "H5'"  sing N N 226 
UAR "C5'" "H5''" sing N N 227 
UAR "C4'" "O4'"  sing N N 228 
UAR "C4'" "C3'"  sing N N 229 
UAR "C4'" "H4'"  sing N N 230 
UAR "O4'" "C1'"  sing N N 231 
UAR "C3'" "O3'"  sing N N 232 
UAR "C3'" "C2'"  sing N N 233 
UAR "C3'" "H3'"  sing N N 234 
UAR "O3'" "HO3'" sing N N 235 
UAR "C2'" "O2'"  sing N N 236 
UAR "C2'" "C1'"  sing N N 237 
UAR "C2'" "H2'"  sing N N 238 
UAR "O2'" "HO2'" sing N N 239 
UAR "C1'" N1     sing N N 240 
UAR "C1'" "H1'"  sing N N 241 
UAR N1    C2     sing N N 242 
UAR N1    C6     sing N N 243 
UAR C2    O2     doub N N 244 
UAR C2    N3     sing N N 245 
UAR N3    C4     sing N N 246 
UAR N3    H3     sing N N 247 
UAR C4    O4     doub N N 248 
UAR C4    C5     sing N N 249 
UAR C5    C6     doub N N 250 
UAR C5    H5     sing N N 251 
UAR C6    H6     sing N N 252 
# 
loop_
_ndb_struct_conf_na.entry_id 
_ndb_struct_conf_na.feature 
2FIJ 'double helix'        
2FIJ 'a-form double helix' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A DG  1  1_555 B DC  10 1_555 -0.295 -0.123 -0.368 -13.605 -13.881 0.451  1  A_DG1:DC20_B   A 1  ? B 20 ? 19 1 
1 A DC  2  1_555 B DG  9  1_555 0.285  -0.201 0.118  -20.684 -3.906  -1.672 2  A_DC2:DG19_B   A 2  ? B 19 ? 19 1 
1 A DG  3  1_555 B DC  8  1_555 -0.153 -0.091 -0.130 -17.243 -10.312 1.804  3  A_DG3:DC18_B   A 3  ? B 18 ? 19 1 
1 A DT  4  1_555 B DA  7  1_555 -0.085 -0.138 0.184  -4.155  0.530   -1.921 4  A_DT4:DA17_B   A 4  ? B 17 ? 20 1 
1 A A2M 5  1_555 B UAR 6  1_555 0.041  -0.139 0.351  19.638  -5.412  3.235  5  A_A2M5:UAR16_B A 5  ? B 16 ? 20 1 
1 A UAR 6  1_555 B A2M 5  1_555 -0.021 -0.115 0.359  -19.391 -4.925  2.908  6  A_UAR6:A2M15_B A 6  ? B 15 ? 20 1 
1 A DA  7  1_555 B DT  4  1_555 0.066  -0.131 0.169  4.212   0.212   -1.763 7  A_DA7:DT14_B   A 7  ? B 14 ? 20 1 
1 A DC  8  1_555 B DG  3  1_555 0.157  -0.074 -0.098 16.741  -10.360 2.108  8  A_DC8:DG13_B   A 8  ? B 13 ? 19 1 
1 A DG  9  1_555 B DC  2  1_555 -0.278 -0.189 0.125  22.555  -3.034  -1.966 9  A_DG9:DC12_B   A 9  ? B 12 ? 19 1 
1 A DC  10 1_555 B DG  1  1_555 0.303  -0.110 -0.393 13.499  -14.471 0.651  10 A_DC10:DG11_B  A 10 ? B 11 ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A DG  1 1_555 B DC  10 1_555 A DC  2  1_555 B DG  9 1_555 -0.533 -1.344 3.410 -1.972 1.420  39.010 -2.187 0.551  3.383 2.125  
2.949  39.083 1 AA_DG1DC2:DG19DC20_BB     A 1 ? B 20 ? A 2  ? B 19 ? 
1 A DC  2 1_555 B DG  9  1_555 A DG  3  1_555 B DC  8 1_555 0.303  -0.948 3.237 2.883  13.948 26.816 -4.428 -0.039 2.472 27.730 
-5.732 30.302 2 AA_DC2DG3:DC18DG19_BB     A 2 ? B 19 ? A 3  ? B 18 ? 
1 A DG  3 1_555 B DC  8  1_555 A DT  4  1_555 B DA  7 1_555 -0.856 -0.731 2.971 -0.618 5.548  28.588 -2.535 1.583  2.800 11.102 
1.236  29.116 3 AA_DG3DT4:DA17DC18_BB     A 3 ? B 18 ? A 4  ? B 17 ? 
1 A DT  4 1_555 B DA  7  1_555 A A2M 5  1_555 B UAR 6 1_555 0.810  -0.097 2.775 1.559  5.486  32.475 -0.966 -1.202 2.757 9.716  
-2.761 32.958 4 AA_DT4A2M5:UAR16DA17_BB   A 4 ? B 17 ? A 5  ? B 16 ? 
1 A A2M 5 1_555 B UAR 6  1_555 A UAR 6  1_555 B A2M 5 1_555 -0.036 -1.055 5.039 -0.026 51.677 21.601 -5.391 0.036  1.054 68.845 
0.035  55.723 5 AA_A2M5UAR6:A2M15UAR16_BB A 5 ? B 16 ? A 6  ? B 15 ? 
1 A UAR 6 1_555 B A2M 5  1_555 A DA  7  1_555 B DT  4 1_555 -0.750 -0.189 2.776 -1.307 5.476  31.892 -1.159 1.149  2.734 9.870  
2.355  32.373 6 AA_UAR6DA7:DT14A2M15_BB   A 6 ? B 15 ? A 7  ? B 14 ? 
1 A DA  7 1_555 B DT  4  1_555 A DC  8  1_555 B DG  3 1_555 0.868  -0.726 2.977 0.432  5.601  28.536 -2.540 -1.645 2.799 11.225 
-0.865 29.073 7 AA_DA7DC8:DG13DT14_BB     A 7 ? B 14 ? A 8  ? B 13 ? 
1 A DC  8 1_555 B DG  3  1_555 A DG  9  1_555 B DC  2 1_555 -0.347 -0.916 3.178 -2.712 13.800 26.391 -4.401 0.159  2.433 27.852 
5.473  29.846 8 AA_DC8DG9:DC12DG13_BB     A 8 ? B 13 ? A 9  ? B 12 ? 
1 A DG  9 1_555 B DC  2  1_555 A DC  10 1_555 B DG  1 1_555 0.506  -1.339 3.446 1.699  1.868  39.726 -2.194 -0.536 3.400 2.745  
-2.498 39.803 9 AA_DG9DC10:DG11DC12_BB    A 9 ? B 12 ? A 10 ? B 11 ? 
# 
loop_
_pdbx_entity_nonpoly.entity_id 
_pdbx_entity_nonpoly.name 
_pdbx_entity_nonpoly.comp_id 
2 'CHLORIDE ION'          CL  
3 'COBALT HEXAMMINE(III)' NCO 
4 water                   HOH 
# 
_pdbx_initial_refinement_model.id               1 
_pdbx_initial_refinement_model.entity_id_list   ? 
_pdbx_initial_refinement_model.type             'experimental model' 
_pdbx_initial_refinement_model.source_name      PDB 
_pdbx_initial_refinement_model.accession_code   1DPL 
_pdbx_initial_refinement_model.details          'NDB entry AD0007/PDB entry 1DPL' 
#