data_2FIL # _entry.id 2FIL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2FIL pdb_00002fil 10.2210/pdb2fil/pdb NDB AD0061 ? ? RCSB RCSB035920 ? ? WWPDB D_1000035920 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2FIH . unspecified PDB 2FII . unspecified PDB 2FIJ . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2FIL _pdbx_database_status.recvd_initial_deposition_date 2005-12-29 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Egli, M.' 1 'Li, F.' 2 # _citation.id primary _citation.title ;2'-Fluoroarabino- and arabinonucleic acid show different conformations, resulting in deviating RNA affinities and processing of their heteroduplexes with RNA by RNase H. ; _citation.journal_abbrev Biochemistry _citation.journal_volume 45 _citation.page_first 4141 _citation.page_last 4152 _citation.year 2006 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16566588 _citation.pdbx_database_id_DOI 10.1021/bi052322r # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Li, F.' 1 ? primary 'Sarkhel, S.' 2 ? primary 'Wilds, C.J.' 3 ? primary 'Wawrzak, Z.' 4 ? primary 'Prakash, T.P.' 5 ? primary 'Manoharan, M.' 6 ? primary 'Egli, M.' 7 ? # _cell.entry_id 2FIL _cell.length_a 32.733 _cell.length_b 69.180 _cell.length_c 32.831 _cell.angle_alpha 90.00 _cell.angle_beta 92.21 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2FIL _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*CP*GP*TP*(A2M)P*(TAF)P*AP*CP*GP*C)-3'" 3093.022 4 ? ;2'-Methylation at A5 and incorperated 2'-fluoroarabino-T at position 6 ; ? ? 2 non-polymer syn 'COBALT HEXAMMINE(III)' 161.116 7 ? ? ? ? 3 water nat water 18.015 169 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DG)(DC)(DG)(DT)(A2M)(TAF)(DA)(DC)(DG)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GCGTATACGC _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DG n 1 4 DT n 1 5 A2M n 1 6 TAF n 1 7 DA n 1 8 DC n 1 9 DG n 1 10 DC n # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2FIL _struct_ref.pdbx_db_accession 2FIL _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2FIL A 1 ? 10 ? 2FIL 101 ? 110 ? 101 110 2 1 2FIL B 1 ? 10 ? 2FIL 201 ? 210 ? 201 210 3 1 2FIL C 1 ? 10 ? 2FIL 301 ? 310 ? 301 310 4 1 2FIL D 1 ? 10 ? 2FIL 401 ? 410 ? 401 410 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A2M 'RNA linking' n ;2'-O-methyladenosine 5'-(dihydrogen phosphate) ; ? 'C11 H16 N5 O7 P' 361.248 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 NCO non-polymer . 'COBALT HEXAMMINE(III)' ? 'Co H18 N6 3' 161.116 TAF 'DNA linking' n ;2'-DEOXY-2'-FLUORO-ARABINO-FURANOSYL THYMINE-5'-PHOSPHATE ; ? 'C10 H14 F N2 O8 P' 340.199 # _exptl.entry_id 2FIL _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.90 _exptl_crystal.density_percent_sol 57.55 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_details ;Final droplet composition: 1 mM oligonucleotide, 10% MPD, 20 mM sodium cacodylate, pH 5.5, 10 mM cobalt hexamine, 6 mM NaCl and 80 mM KCl., VAPOR DIFFUSION, HANGING DROP, temperature 291K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MPD ? ? ? 1 2 1 'sodium cacodylate' ? ? ? 1 3 1 'cobalt hexamine' ? ? ? 1 4 1 NaCl ? ? ? 1 5 1 KCl ? ? ? 1 6 1 H2O ? ? ? 1 7 2 MPD ? ? ? 1 8 2 'sodium cacodylate' ? ? ? 1 9 2 'cobalt hexamine' ? ? ? 1 10 2 NaCl ? ? ? 1 11 2 KCl ? ? ? 1 12 2 H2O ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 103 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2003-06-21 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 5ID-B' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 5ID-B _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 2FIL _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 30 _reflns.d_resolution_high 1.69 _reflns.number_obs 15695 _reflns.number_all 15695 _reflns.percent_possible_obs 95.4 _reflns.pdbx_Rmerge_I_obs 0.094 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 8.1 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.69 _reflns_shell.d_res_low 1.80 _reflns_shell.percent_possible_all 95.8 _reflns_shell.Rmerge_I_obs 0.347 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.8 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2FIL _refine.ls_number_reflns_obs 15695 _refine.ls_number_reflns_all 15695 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.00 _refine.ls_d_res_high 1.69 _refine.ls_percent_reflns_obs 95.70 _refine.ls_R_factor_obs 0.20401 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.20341 _refine.ls_R_factor_R_free 0.21543 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 805 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.982 _refine.correlation_coeff_Fo_to_Fc_free 0.949 _refine.B_iso_mean 35.247 _refine.aniso_B[1][1] 1.83 _refine.aniso_B[2][2] -3.90 _refine.aniso_B[3][3] 2.09 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.35 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'NDB entry AD0007/PDB entry 1DPL' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.149 _refine.pdbx_overall_ESU_R_Free 0.130 _refine.overall_SU_ML 0.090 _refine.overall_SU_B 7.429 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 819 _refine_hist.pdbx_number_atoms_ligand 49 _refine_hist.number_atoms_solvent 169 _refine_hist.number_atoms_total 1037 _refine_hist.d_res_high 1.69 _refine_hist.d_res_low 30.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.015 0.021 ? 958 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 409 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.590 3.000 ? 1509 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.881 3.000 ? 1010 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.226 0.200 ? 164 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.010 0.020 ? 416 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.285 0.200 ? 250 'X-RAY DIFFRACTION' ? r_nbd_other 0.337 0.200 ? 540 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.285 0.200 ? 322 'X-RAY DIFFRACTION' ? r_nbtor_other 0.123 0.200 ? 226 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.454 0.200 ? 164 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other 0.105 0.200 ? 1 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.192 0.200 ? 15 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.292 0.200 ? 47 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.316 0.200 ? 16 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 8.055 3.000 ? 1389 'X-RAY DIFFRACTION' ? r_scangle_it 9.395 4.500 ? 1472 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.690 _refine_ls_shell.d_res_low 1.734 _refine_ls_shell.number_reflns_R_work 1111 _refine_ls_shell.R_factor_R_work 0.333 _refine_ls_shell.percent_reflns_obs 96.87 _refine_ls_shell.R_factor_R_free 0.385 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 66 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2FIL _struct.title ;Crystal Structure Analysis of the A-DNA Decamer GCGT-2'OMeA-faT-ACGC, with Incorporated 2'-O-Methylated-Adenosine (2'OMeA) and 2'-Fluoroarabino-Thymidine (faT) ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2FIL _struct_keywords.pdbx_keywords DNA _struct_keywords.text ;2'-Fluoroarabino Acid, Sugar Modifications, A-form DNA, DNA ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 3 ? # loop_ _struct_biol.id _struct_biol.details _struct_biol.pdbx_parent_biol_id 1 'The biological assembly is a duplex and corresponds to the crystallographic asymmetric unit, hence no symmetry operators are needed' ? 2 ? ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DT 4 "O3'" ? ? ? 1_555 A A2M 5 P ? ? A DT 104 A A2M 105 1_555 ? ? ? ? ? ? ? 1.601 ? ? covale2 covale one ? A A2M 5 "O3'" ? ? ? 1_555 A TAF 6 P ? ? A A2M 105 A TAF 106 1_555 ? ? ? ? ? ? ? 1.583 ? ? covale3 covale one ? A TAF 6 "O3'" ? ? ? 1_555 A DA 7 P ? ? A TAF 106 A DA 107 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale4 covale both ? B DT 4 "O3'" ? ? ? 1_555 B A2M 5 P ? ? B DT 204 B A2M 205 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale5 covale one ? B A2M 5 "O3'" ? ? ? 1_555 B TAF 6 P ? ? B A2M 205 B TAF 206 1_555 ? ? ? ? ? ? ? 1.570 ? ? covale6 covale one ? B TAF 6 "O3'" ? ? ? 1_555 B DA 7 P ? ? B TAF 206 B DA 207 1_555 ? ? ? ? ? ? ? 1.596 ? ? covale7 covale both ? C DT 4 "O3'" ? ? ? 1_555 C A2M 5 P ? ? C DT 304 C A2M 305 1_555 ? ? ? ? ? ? ? 1.601 ? ? covale8 covale one ? C A2M 5 "O3'" ? ? ? 1_555 C TAF 6 P ? ? C A2M 305 C TAF 306 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale9 covale one ? C TAF 6 "O3'" ? ? ? 1_555 C DA 7 P ? ? C TAF 306 C DA 307 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale10 covale both ? D DT 4 "O3'" ? ? ? 1_555 D A2M 5 P ? ? D DT 404 D A2M 405 1_555 ? ? ? ? ? ? ? 1.588 ? ? covale11 covale one ? D A2M 5 "O3'" ? ? ? 1_555 D TAF 6 P ? ? D A2M 405 D TAF 406 1_555 ? ? ? ? ? ? ? 1.569 ? ? covale12 covale one ? D TAF 6 "O3'" ? ? ? 1_555 D DA 7 P ? ? D TAF 406 D DA 407 1_555 ? ? ? ? ? ? ? 1.603 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 10 N3 ? ? A DG 101 B DC 210 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 10 O2 ? ? A DG 101 B DC 210 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 10 N4 ? ? A DG 101 B DC 210 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 102 B DG 209 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 102 B DG 209 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 102 B DG 209 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 103 B DC 208 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 103 B DC 208 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 103 B DC 208 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 7 N1 ? ? A DT 104 B DA 207 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 7 N6 ? ? A DT 104 B DA 207 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A2M 5 N1 ? ? ? 1_555 B TAF 6 N3 ? ? A A2M 105 B TAF 206 1_555 ? ? ? ? ? ? 'A2M-TAF PAIR' ? ? ? hydrog13 hydrog ? ? A TAF 6 N3 ? ? ? 1_555 B A2M 5 N1 ? ? A TAF 106 B A2M 205 1_555 ? ? ? ? ? ? 'TAF-A2M PAIR' ? ? ? hydrog14 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 107 B DT 204 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 107 B DT 204 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 108 B DG 203 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 108 B DG 203 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 108 B DG 203 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 109 B DC 202 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 109 B DC 202 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 109 B DC 202 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 110 B DG 201 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 110 B DG 201 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 110 B DG 201 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C DG 1 N1 ? ? ? 1_555 D DC 10 N3 ? ? C DG 301 D DC 410 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C DG 1 N2 ? ? ? 1_555 D DC 10 O2 ? ? C DG 301 D DC 410 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C DG 1 O6 ? ? ? 1_555 D DC 10 N4 ? ? C DG 301 D DC 410 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C DC 2 N3 ? ? ? 1_555 D DG 9 N1 ? ? C DC 302 D DG 409 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C DC 2 N4 ? ? ? 1_555 D DG 9 O6 ? ? C DC 302 D DG 409 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C DC 2 O2 ? ? ? 1_555 D DG 9 N2 ? ? C DC 302 D DG 409 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C DG 3 N1 ? ? ? 1_555 D DC 8 N3 ? ? C DG 303 D DC 408 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C DG 3 N2 ? ? ? 1_555 D DC 8 O2 ? ? C DG 303 D DC 408 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C DG 3 O6 ? ? ? 1_555 D DC 8 N4 ? ? C DG 303 D DC 408 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C DT 4 N3 ? ? ? 1_555 D DA 7 N1 ? ? C DT 304 D DA 407 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C DT 4 O4 ? ? ? 1_555 D DA 7 N6 ? ? C DT 304 D DA 407 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C A2M 5 N1 ? ? ? 1_555 D TAF 6 N3 ? ? C A2M 305 D TAF 406 1_555 ? ? ? ? ? ? 'A2M-TAF PAIR' ? ? ? hydrog37 hydrog ? ? C TAF 6 N3 ? ? ? 1_555 D A2M 5 N1 ? ? C TAF 306 D A2M 405 1_555 ? ? ? ? ? ? 'TAF-A2M PAIR' ? ? ? hydrog38 hydrog ? ? C DA 7 N1 ? ? ? 1_555 D DT 4 N3 ? ? C DA 307 D DT 404 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C DA 7 N6 ? ? ? 1_555 D DT 4 O4 ? ? C DA 307 D DT 404 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C DC 8 N3 ? ? ? 1_555 D DG 3 N1 ? ? C DC 308 D DG 403 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C DC 8 N4 ? ? ? 1_555 D DG 3 O6 ? ? C DC 308 D DG 403 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C DC 8 O2 ? ? ? 1_555 D DG 3 N2 ? ? C DC 308 D DG 403 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C DG 9 N1 ? ? ? 1_555 D DC 2 N3 ? ? C DG 309 D DC 402 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C DG 9 N2 ? ? ? 1_555 D DC 2 O2 ? ? C DG 309 D DC 402 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C DG 9 O6 ? ? ? 1_555 D DC 2 N4 ? ? C DG 309 D DC 402 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C DC 10 N3 ? ? ? 1_555 D DG 1 N1 ? ? C DC 310 D DG 401 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C DC 10 N4 ? ? ? 1_555 D DG 1 O6 ? ? C DC 310 D DG 401 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C DC 10 O2 ? ? ? 1_555 D DG 1 N2 ? ? C DC 310 D DG 401 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B NCO 3211 ? 4 'BINDING SITE FOR RESIDUE NCO B 3211' AC2 Software A NCO 3212 ? 7 'BINDING SITE FOR RESIDUE NCO A 3212' AC3 Software A NCO 3213 ? 3 'BINDING SITE FOR RESIDUE NCO A 3213' AC4 Software C NCO 3214 ? 8 'BINDING SITE FOR RESIDUE NCO C 3214' AC5 Software D NCO 3215 ? 8 'BINDING SITE FOR RESIDUE NCO D 3215' AC6 Software D NCO 3216 ? 2 'BINDING SITE FOR RESIDUE NCO D 3216' AC7 Software B NCO 3217 ? 4 'BINDING SITE FOR RESIDUE NCO B 3217' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 DC B 2 ? DC B 202 . ? 1_555 ? 2 AC1 4 DG B 3 ? DG B 203 . ? 1_555 ? 3 AC1 4 DT B 4 ? DT B 204 . ? 1_555 ? 4 AC1 4 HOH M . ? HOH B 1072 . ? 1_555 ? 5 AC2 7 DC A 2 ? DC A 102 . ? 1_555 ? 6 AC2 7 DG A 3 ? DG A 103 . ? 1_555 ? 7 AC2 7 DT A 4 ? DT A 104 . ? 1_555 ? 8 AC2 7 HOH L . ? HOH A 1082 . ? 1_555 ? 9 AC2 7 HOH L . ? HOH A 1283 . ? 1_555 ? 10 AC2 7 HOH M . ? HOH B 1072 . ? 1_555 ? 11 AC2 7 NCO H . ? NCO B 3217 . ? 1_555 ? 12 AC3 3 DC A 2 ? DC A 102 . ? 1_555 ? 13 AC3 3 DC B 2 ? DC B 202 . ? 1_555 ? 14 AC3 3 DG D 9 ? DG D 409 . ? 1_554 ? 15 AC4 8 DC C 2 ? DC C 302 . ? 1_555 ? 16 AC4 8 DG C 3 ? DG C 303 . ? 1_555 ? 17 AC4 8 DT C 4 ? DT C 304 . ? 1_555 ? 18 AC4 8 HOH N . ? HOH C 1089 . ? 1_555 ? 19 AC4 8 HOH N . ? HOH C 1113 . ? 1_555 ? 20 AC4 8 TAF D 6 ? TAF D 406 . ? 1_555 ? 21 AC4 8 DA D 7 ? DA D 407 . ? 1_555 ? 22 AC4 8 HOH O . ? HOH D 1017 . ? 1_555 ? 23 AC5 8 DG D 3 ? DG D 403 . ? 1_555 ? 24 AC5 8 DT D 4 ? DT D 404 . ? 1_555 ? 25 AC5 8 HOH O . ? HOH D 1015 . ? 1_555 ? 26 AC5 8 HOH O . ? HOH D 1021 . ? 1_555 ? 27 AC5 8 HOH O . ? HOH D 1034 . ? 1_555 ? 28 AC5 8 HOH O . ? HOH D 1086 . ? 1_555 ? 29 AC5 8 HOH O . ? HOH D 1088 . ? 1_555 ? 30 AC5 8 HOH O . ? HOH D 1159 . ? 1_555 ? 31 AC6 2 DC C 2 ? DC C 302 . ? 1_555 ? 32 AC6 2 DC D 2 ? DC D 402 . ? 1_555 ? 33 AC7 4 NCO E . ? NCO A 3212 . ? 1_555 ? 34 AC7 4 DT B 4 ? DT B 204 . ? 1_555 ? 35 AC7 4 A2M B 5 ? A2M B 205 . ? 1_555 ? 36 AC7 4 HOH M . ? HOH B 1010 . ? 1_555 ? # _database_PDB_matrix.entry_id 2FIL _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2FIL _atom_sites.fract_transf_matrix[1][1] 0.030550 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001179 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014455 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.030482 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CO F N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 101 101 DG G A . n A 1 2 DC 2 102 102 DC C A . n A 1 3 DG 3 103 103 DG G A . n A 1 4 DT 4 104 104 DT T A . n A 1 5 A2M 5 105 105 A2M A2M A . n A 1 6 TAF 6 106 106 TAF TAF A . n A 1 7 DA 7 107 107 DA A A . n A 1 8 DC 8 108 108 DC C A . n A 1 9 DG 9 109 109 DG G A . n A 1 10 DC 10 110 110 DC C A . n B 1 1 DG 1 201 201 DG G B . n B 1 2 DC 2 202 202 DC C B . n B 1 3 DG 3 203 203 DG G B . n B 1 4 DT 4 204 204 DT T B . n B 1 5 A2M 5 205 205 A2M A2M B . n B 1 6 TAF 6 206 206 TAF TAF B . n B 1 7 DA 7 207 207 DA A B . n B 1 8 DC 8 208 208 DC C B . n B 1 9 DG 9 209 209 DG G B . n B 1 10 DC 10 210 210 DC C B . n C 1 1 DG 1 301 301 DG G C . n C 1 2 DC 2 302 302 DC C C . n C 1 3 DG 3 303 303 DG G C . n C 1 4 DT 4 304 304 DT T C . n C 1 5 A2M 5 305 305 A2M A2M C . n C 1 6 TAF 6 306 306 TAF TAF C . n C 1 7 DA 7 307 307 DA A C . n C 1 8 DC 8 308 308 DC C C . n C 1 9 DG 9 309 309 DG G C . n C 1 10 DC 10 310 310 DC C C . n D 1 1 DG 1 401 401 DG G D . n D 1 2 DC 2 402 402 DC C D . n D 1 3 DG 3 403 403 DG G D . n D 1 4 DT 4 404 404 DT T D . n D 1 5 A2M 5 405 405 A2M A2M D . n D 1 6 TAF 6 406 406 TAF TAF D . n D 1 7 DA 7 407 407 DA A D . n D 1 8 DC 8 408 408 DC C D . n D 1 9 DG 9 409 409 DG G D . n D 1 10 DC 10 410 410 DC C D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NCO 1 3212 3212 NCO NCO A . F 2 NCO 1 3213 3213 NCO NCO A . G 2 NCO 1 3211 3211 NCO NCO B . H 2 NCO 1 3217 3217 NCO NCO B . I 2 NCO 1 3214 3214 NCO NCO C . J 2 NCO 1 3215 3215 NCO NCO D . K 2 NCO 1 3216 3216 NCO NCO D . L 3 HOH 1 1001 1001 HOH HOH A . L 3 HOH 2 1005 1005 HOH HOH A . L 3 HOH 3 1006 1006 HOH HOH A . L 3 HOH 4 1009 1009 HOH HOH A . L 3 HOH 5 1011 1011 HOH HOH A . L 3 HOH 6 1020 1020 HOH HOH A . L 3 HOH 7 1023 1023 HOH HOH A . L 3 HOH 8 1025 1025 HOH HOH A . L 3 HOH 9 1028 1028 HOH HOH A . L 3 HOH 10 1036 1036 HOH HOH A . L 3 HOH 11 1042 1042 HOH HOH A . L 3 HOH 12 1045 1045 HOH HOH A . L 3 HOH 13 1046 1046 HOH HOH A . L 3 HOH 14 1049 1049 HOH HOH A . L 3 HOH 15 1081 1081 HOH HOH A . L 3 HOH 16 1082 1082 HOH HOH A . L 3 HOH 17 1093 1093 HOH HOH A . L 3 HOH 18 1099 1099 HOH HOH A . L 3 HOH 19 1121 1121 HOH HOH A . L 3 HOH 20 1124 1124 HOH HOH A . L 3 HOH 21 1129 1129 HOH HOH A . L 3 HOH 22 1141 1141 HOH HOH A . L 3 HOH 23 1144 1144 HOH HOH A . L 3 HOH 24 1145 1145 HOH HOH A . L 3 HOH 25 1147 1147 HOH HOH A . L 3 HOH 26 1149 1149 HOH HOH A . L 3 HOH 27 1154 1154 HOH HOH A . L 3 HOH 28 1155 1155 HOH HOH A . L 3 HOH 29 1156 1156 HOH HOH A . L 3 HOH 30 1157 1157 HOH HOH A . L 3 HOH 31 1170 1170 HOH HOH A . L 3 HOH 32 1182 1182 HOH HOH A . L 3 HOH 33 1203 1203 HOH HOH A . L 3 HOH 34 1235 1235 HOH HOH A . L 3 HOH 35 1242 1242 HOH HOH A . L 3 HOH 36 1256 1256 HOH HOH A . L 3 HOH 37 1257 1257 HOH HOH A . L 3 HOH 38 1264 1264 HOH HOH A . L 3 HOH 39 1267 1267 HOH HOH A . L 3 HOH 40 1274 1274 HOH HOH A . L 3 HOH 41 1276 1276 HOH HOH A . L 3 HOH 42 1278 1278 HOH HOH A . L 3 HOH 43 1281 1281 HOH HOH A . L 3 HOH 44 1283 1283 HOH HOH A . L 3 HOH 45 1285 1285 HOH HOH A . L 3 HOH 46 1288 1288 HOH HOH A . L 3 HOH 47 1293 1293 HOH HOH A . L 3 HOH 48 1298 1298 HOH HOH A . M 3 HOH 1 1008 1008 HOH HOH B . M 3 HOH 2 1010 1010 HOH HOH B . M 3 HOH 3 1027 1027 HOH HOH B . M 3 HOH 4 1044 1044 HOH HOH B . M 3 HOH 5 1051 1051 HOH HOH B . M 3 HOH 6 1071 1071 HOH HOH B . M 3 HOH 7 1072 1072 HOH HOH B . M 3 HOH 8 1080 1080 HOH HOH B . M 3 HOH 9 1083 1083 HOH HOH B . M 3 HOH 10 1103 1103 HOH HOH B . M 3 HOH 11 1117 1117 HOH HOH B . M 3 HOH 12 1132 1132 HOH HOH B . M 3 HOH 13 1133 1133 HOH HOH B . M 3 HOH 14 1134 1134 HOH HOH B . M 3 HOH 15 1143 1143 HOH HOH B . M 3 HOH 16 1150 1150 HOH HOH B . M 3 HOH 17 1162 1162 HOH HOH B . M 3 HOH 18 1166 1166 HOH HOH B . M 3 HOH 19 1167 1167 HOH HOH B . M 3 HOH 20 1192 1192 HOH HOH B . M 3 HOH 21 1193 1193 HOH HOH B . M 3 HOH 22 1196 1196 HOH HOH B . M 3 HOH 23 1197 1197 HOH HOH B . M 3 HOH 24 1198 1198 HOH HOH B . M 3 HOH 25 1207 1207 HOH HOH B . M 3 HOH 26 1210 1210 HOH HOH B . M 3 HOH 27 1243 1243 HOH HOH B . M 3 HOH 28 1254 1254 HOH HOH B . M 3 HOH 29 1255 1255 HOH HOH B . M 3 HOH 30 1270 1270 HOH HOH B . M 3 HOH 31 1297 1297 HOH HOH B . N 3 HOH 1 1003 1003 HOH HOH C . N 3 HOH 2 1014 1014 HOH HOH C . N 3 HOH 3 1016 1016 HOH HOH C . N 3 HOH 4 1032 1032 HOH HOH C . N 3 HOH 5 1033 1033 HOH HOH C . N 3 HOH 6 1037 1037 HOH HOH C . N 3 HOH 7 1070 1070 HOH HOH C . N 3 HOH 8 1073 1073 HOH HOH C . N 3 HOH 9 1074 1074 HOH HOH C . N 3 HOH 10 1077 1077 HOH HOH C . N 3 HOH 11 1079 1079 HOH HOH C . N 3 HOH 12 1089 1089 HOH HOH C . N 3 HOH 13 1100 1100 HOH HOH C . N 3 HOH 14 1109 1109 HOH HOH C . N 3 HOH 15 1110 1110 HOH HOH C . N 3 HOH 16 1111 1111 HOH HOH C . N 3 HOH 17 1112 1112 HOH HOH C . N 3 HOH 18 1113 1113 HOH HOH C . N 3 HOH 19 1118 1118 HOH HOH C . N 3 HOH 20 1122 1122 HOH HOH C . N 3 HOH 21 1125 1125 HOH HOH C . N 3 HOH 22 1126 1126 HOH HOH C . N 3 HOH 23 1127 1127 HOH HOH C . N 3 HOH 24 1139 1139 HOH HOH C . N 3 HOH 25 1160 1160 HOH HOH C . N 3 HOH 26 1165 1165 HOH HOH C . N 3 HOH 27 1171 1171 HOH HOH C . N 3 HOH 28 1185 1185 HOH HOH C . N 3 HOH 29 1216 1216 HOH HOH C . N 3 HOH 30 1222 1222 HOH HOH C . N 3 HOH 31 1223 1223 HOH HOH C . N 3 HOH 32 1227 1227 HOH HOH C . N 3 HOH 33 1229 1229 HOH HOH C . N 3 HOH 34 1236 1236 HOH HOH C . N 3 HOH 35 1238 1238 HOH HOH C . N 3 HOH 36 1239 1239 HOH HOH C . N 3 HOH 37 1240 1240 HOH HOH C . N 3 HOH 38 1241 1241 HOH HOH C . N 3 HOH 39 1246 1246 HOH HOH C . N 3 HOH 40 1261 1261 HOH HOH C . N 3 HOH 41 1262 1262 HOH HOH C . N 3 HOH 42 1292 1292 HOH HOH C . O 3 HOH 1 1015 1015 HOH HOH D . O 3 HOH 2 1017 1017 HOH HOH D . O 3 HOH 3 1018 1018 HOH HOH D . O 3 HOH 4 1021 1021 HOH HOH D . O 3 HOH 5 1022 1022 HOH HOH D . O 3 HOH 6 1031 1031 HOH HOH D . O 3 HOH 7 1034 1034 HOH HOH D . O 3 HOH 8 1035 1035 HOH HOH D . O 3 HOH 9 1039 1039 HOH HOH D . O 3 HOH 10 1040 1040 HOH HOH D . O 3 HOH 11 1048 1048 HOH HOH D . O 3 HOH 12 1050 1050 HOH HOH D . O 3 HOH 13 1052 1052 HOH HOH D . O 3 HOH 14 1053 1053 HOH HOH D . O 3 HOH 15 1059 1059 HOH HOH D . O 3 HOH 16 1061 1061 HOH HOH D . O 3 HOH 17 1062 1062 HOH HOH D . O 3 HOH 18 1066 1066 HOH HOH D . O 3 HOH 19 1068 1068 HOH HOH D . O 3 HOH 20 1069 1069 HOH HOH D . O 3 HOH 21 1085 1085 HOH HOH D . O 3 HOH 22 1086 1086 HOH HOH D . O 3 HOH 23 1087 1087 HOH HOH D . O 3 HOH 24 1088 1088 HOH HOH D . O 3 HOH 25 1090 1090 HOH HOH D . O 3 HOH 26 1106 1106 HOH HOH D . O 3 HOH 27 1107 1107 HOH HOH D . O 3 HOH 28 1115 1115 HOH HOH D . O 3 HOH 29 1136 1136 HOH HOH D . O 3 HOH 30 1138 1138 HOH HOH D . O 3 HOH 31 1159 1159 HOH HOH D . O 3 HOH 32 1175 1175 HOH HOH D . O 3 HOH 33 1176 1176 HOH HOH D . O 3 HOH 34 1177 1177 HOH HOH D . O 3 HOH 35 1178 1178 HOH HOH D . O 3 HOH 36 1188 1188 HOH HOH D . O 3 HOH 37 1202 1202 HOH HOH D . O 3 HOH 38 1213 1213 HOH HOH D . O 3 HOH 39 1221 1221 HOH HOH D . O 3 HOH 40 1224 1224 HOH HOH D . O 3 HOH 41 1247 1247 HOH HOH D . O 3 HOH 42 1248 1248 HOH HOH D . O 3 HOH 43 1249 1249 HOH HOH D . O 3 HOH 44 1251 1251 HOH HOH D . O 3 HOH 45 1273 1273 HOH HOH D . O 3 HOH 46 1275 1275 HOH HOH D . O 3 HOH 47 1290 1290 HOH HOH D . O 3 HOH 48 1295 1295 HOH HOH D . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A A2M 5 A A2M 105 ? A "2'-O-METHYL-ADENOSINE-5'-MONOPHOSPHATE" 2 A TAF 6 A TAF 106 ? DT ? 3 B A2M 5 B A2M 205 ? A "2'-O-METHYL-ADENOSINE-5'-MONOPHOSPHATE" 4 B TAF 6 B TAF 206 ? DT ? 5 C A2M 5 C A2M 305 ? A "2'-O-METHYL-ADENOSINE-5'-MONOPHOSPHATE" 6 C TAF 6 C TAF 306 ? DT ? 7 D A2M 5 D A2M 405 ? A "2'-O-METHYL-ADENOSINE-5'-MONOPHOSPHATE" 8 D TAF 6 D TAF 406 ? DT ? # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F,G,H,L,M 2 1 C,D,I,J,K,N,O # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-05-23 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' 8 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_initial_refinement_model 6 5 'Structure model' struct_conn 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.name' 3 5 'Structure model' '_database_2.pdbx_DOI' 4 5 'Structure model' '_database_2.pdbx_database_accession' 5 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 22.5660 1.2675 9.8383 0.0401 0.0357 0.0123 -0.0084 -0.0003 -0.0081 0.2315 3.4926 0.7979 -0.2436 -0.2431 -0.4661 0.0782 0.0298 -0.0997 0.2197 -0.0577 0.2128 -0.1573 0.0414 -0.0205 'X-RAY DIFFRACTION' 2 ? refined 25.4251 18.5772 26.4573 0.0086 0.0527 -0.0008 -0.0041 0.0014 0.0116 0.6377 3.4513 1.1020 -0.3380 -0.0007 -0.0695 0.0172 0.0847 0.0861 0.1555 -0.0262 -0.2069 0.1005 -0.0335 0.0090 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 101 A 1 A 110 A 10 ? 'X-RAY DIFFRACTION' ? 2 1 B 201 B 1 B 210 B 10 ? 'X-RAY DIFFRACTION' ? 3 2 C 301 C 1 C 310 C 10 ? 'X-RAY DIFFRACTION' ? 4 2 D 401 D 1 D 410 D 10 ? 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 MAR345 'data collection' . ? 2 XDS 'data scaling' . ? 3 EPMR phasing . ? 4 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 N3 B DC 202 ? ? C4 B DC 202 ? ? 1.292 1.335 -0.043 0.007 N 2 1 C2 D DC 402 ? ? O2 D DC 402 ? ? 1.296 1.240 0.056 0.009 N 3 1 N3 D DC 402 ? ? C4 D DC 402 ? ? 1.383 1.335 0.048 0.007 N 4 1 N7 D DG 403 ? ? C8 D DG 403 ? ? 1.261 1.305 -0.044 0.006 N 5 1 C8 D DG 403 ? ? N9 D DG 403 ? ? 1.325 1.374 -0.049 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 103 ? ? "C4'" A DG 103 ? ? "C3'" A DG 103 ? ? 101.14 104.50 -3.36 0.40 N 2 1 C5 A DT 104 ? ? C4 A DT 104 ? ? O4 A DT 104 ? ? 120.68 124.90 -4.22 0.70 N 3 1 "O3'" A DT 104 ? ? P A A2M 105 ? ? OP2 A A2M 105 ? ? 118.13 110.50 7.63 1.10 Y 4 1 "O4'" A DA 107 ? ? "C1'" A DA 107 ? ? N9 A DA 107 ? ? 111.09 108.30 2.79 0.30 N 5 1 "O4'" A DG 109 ? ? "C1'" A DG 109 ? ? "C2'" A DG 109 ? ? 110.83 106.80 4.03 0.50 N 6 1 "O4'" A DG 109 ? ? "C1'" A DG 109 ? ? N9 A DG 109 ? ? 111.98 108.30 3.68 0.30 N 7 1 "O4'" A DC 110 ? ? "C1'" A DC 110 ? ? N1 A DC 110 ? ? 112.03 108.30 3.73 0.30 N 8 1 C6 B DC 202 ? ? N1 B DC 202 ? ? C2 B DC 202 ? ? 123.07 120.30 2.77 0.40 N 9 1 N3 B DC 202 ? ? C4 B DC 202 ? ? N4 B DC 202 ? ? 112.55 118.00 -5.45 0.70 N 10 1 "O4'" B DG 203 ? ? "C4'" B DG 203 ? ? "C3'" B DG 203 ? ? 99.20 104.50 -5.30 0.40 N 11 1 "O4'" B DG 203 ? ? "C1'" B DG 203 ? ? N9 B DG 203 ? ? 97.35 108.00 -10.65 0.70 N 12 1 C8 B DG 203 ? ? N9 B DG 203 ? ? "C1'" B DG 203 ? ? 137.70 127.00 10.70 1.30 N 13 1 C4 B DG 203 ? ? N9 B DG 203 ? ? "C1'" B DG 203 ? ? 116.12 126.50 -10.38 1.30 N 14 1 "O5'" B DT 204 ? ? "C5'" B DT 204 ? ? "C4'" B DT 204 ? ? 103.97 109.40 -5.43 0.80 N 15 1 "C3'" B TAF 206 ? ? "O3'" B TAF 206 ? ? P B DA 207 ? ? 126.92 119.70 7.22 1.20 Y 16 1 "O4'" B DA 207 ? ? "C1'" B DA 207 ? ? N9 B DA 207 ? ? 112.75 108.30 4.45 0.30 N 17 1 "O4'" B DG 209 ? ? "C1'" B DG 209 ? ? N9 B DG 209 ? ? 113.60 108.30 5.30 0.30 N 18 1 "O5'" B DC 210 ? ? "C5'" B DC 210 ? ? "C4'" B DC 210 ? ? 102.59 109.40 -6.81 0.80 N 19 1 "O4'" B DC 210 ? ? "C4'" B DC 210 ? ? "C3'" B DC 210 ? ? 101.13 104.50 -3.37 0.40 N 20 1 "C4'" B DC 210 ? ? "C3'" B DC 210 ? ? "C2'" B DC 210 ? ? 97.28 102.20 -4.92 0.70 N 21 1 "O4'" C DC 302 ? ? "C4'" C DC 302 ? ? "C3'" C DC 302 ? ? 99.04 104.50 -5.46 0.40 N 22 1 N3 C DT 304 ? ? C4 C DT 304 ? ? O4 C DT 304 ? ? 126.15 119.90 6.25 0.60 N 23 1 "C3'" C DT 304 ? ? "O3'" C DT 304 ? ? P C A2M 305 ? ? 111.13 119.70 -8.57 1.20 Y 24 1 "O3'" C DT 304 ? ? P C A2M 305 ? ? OP2 C A2M 305 ? ? 118.25 110.50 7.75 1.10 Y 25 1 "O3'" C TAF 306 ? ? P C DA 307 ? ? "O5'" C DA 307 ? ? 91.15 104.00 -12.85 1.90 Y 26 1 "C3'" C DA 307 ? ? "C2'" C DA 307 ? ? "C1'" C DA 307 ? ? 95.08 102.40 -7.32 0.80 N 27 1 "O4'" C DA 307 ? ? "C1'" C DA 307 ? ? N9 C DA 307 ? ? 111.21 108.30 2.91 0.30 N 28 1 "O4'" C DC 308 ? ? "C4'" C DC 308 ? ? "C3'" C DC 308 ? ? 99.89 104.50 -4.61 0.40 N 29 1 "O4'" C DC 308 ? ? "C1'" C DC 308 ? ? N1 C DC 308 ? ? 110.30 108.30 2.00 0.30 N 30 1 "O4'" C DG 309 ? ? "C1'" C DG 309 ? ? N9 C DG 309 ? ? 113.09 108.30 4.79 0.30 N 31 1 C4 C DG 309 ? ? C5 C DG 309 ? ? N7 C DG 309 ? ? 113.49 110.80 2.69 0.40 N 32 1 "O4'" C DC 310 ? ? "C4'" C DC 310 ? ? "C3'" C DC 310 ? ? 101.82 104.50 -2.68 0.40 N 33 1 "O4'" D DG 401 ? ? "C1'" D DG 401 ? ? N9 D DG 401 ? ? 113.13 108.30 4.83 0.30 N 34 1 "O5'" D DC 402 ? ? "C5'" D DC 402 ? ? "C4'" D DC 402 ? ? 102.88 109.40 -6.52 0.80 N 35 1 "O4'" D DC 402 ? ? "C4'" D DC 402 ? ? "C3'" D DC 402 ? ? 101.27 104.50 -3.23 0.40 N 36 1 "O4'" D DC 402 ? ? "C1'" D DC 402 ? ? "C2'" D DC 402 ? ? 110.19 106.80 3.39 0.50 N 37 1 C6 D DC 402 ? ? N1 D DC 402 ? ? C2 D DC 402 ? ? 125.25 120.30 4.95 0.40 N 38 1 N1 D DC 402 ? ? C2 D DC 402 ? ? N3 D DC 402 ? ? 114.36 119.20 -4.84 0.70 N 39 1 N3 D DC 402 ? ? C2 D DC 402 ? ? O2 D DC 402 ? ? 129.21 121.90 7.31 0.70 N 40 1 N3 D DC 402 ? ? C4 D DC 402 ? ? N4 D DC 402 ? ? 125.55 118.00 7.55 0.70 N 41 1 C5 D DC 402 ? ? C4 D DC 402 ? ? N4 D DC 402 ? ? 112.07 120.20 -8.13 0.70 N 42 1 "C4'" D DG 403 ? ? "C3'" D DG 403 ? ? "C2'" D DG 403 ? ? 97.27 102.20 -4.93 0.70 N 43 1 C4 D DG 403 ? ? C5 D DG 403 ? ? N7 D DG 403 ? ? 107.43 110.80 -3.37 0.40 N 44 1 C5 D DG 403 ? ? N7 D DG 403 ? ? C8 D DG 403 ? ? 107.97 104.30 3.67 0.50 N 45 1 "O4'" D DT 404 ? ? "C4'" D DT 404 ? ? "C3'" D DT 404 ? ? 101.70 104.50 -2.80 0.40 N 46 1 "O4'" D DT 404 ? ? "C1'" D DT 404 ? ? N1 D DT 404 ? ? 103.60 108.00 -4.40 0.70 N 47 1 N3 D DT 404 ? ? C2 D DT 404 ? ? O2 D DT 404 ? ? 126.41 122.30 4.11 0.60 N 48 1 N3 D DT 404 ? ? C4 D DT 404 ? ? O4 D DT 404 ? ? 115.64 119.90 -4.26 0.60 N 49 1 C4 D DT 404 ? ? C5 D DT 404 ? ? C7 D DT 404 ? ? 131.47 119.00 12.47 0.60 N 50 1 C6 D DT 404 ? ? C5 D DT 404 ? ? C7 D DT 404 ? ? 113.69 122.90 -9.21 0.60 N 51 1 "C3'" D DT 404 ? ? "O3'" D DT 404 ? ? P D A2M 405 ? ? 127.47 119.70 7.77 1.20 Y 52 1 "O3'" D DT 404 ? ? P D A2M 405 ? ? "O5'" D A2M 405 ? ? 91.93 104.00 -12.07 1.90 Y 53 1 "O3'" D DT 404 ? ? P D A2M 405 ? ? OP1 D A2M 405 ? ? 120.57 110.50 10.07 1.10 Y 54 1 "O4'" D DA 407 ? ? "C1'" D DA 407 ? ? N9 D DA 407 ? ? 112.16 108.30 3.86 0.30 N 55 1 N1 D DC 408 ? ? C2 D DC 408 ? ? O2 D DC 408 ? ? 122.73 118.90 3.83 0.60 N 56 1 "O4'" D DG 409 ? ? "C4'" D DG 409 ? ? "C3'" D DG 409 ? ? 100.55 104.50 -3.95 0.40 N 57 1 "O4'" D DG 409 ? ? "C1'" D DG 409 ? ? N9 D DG 409 ? ? 102.33 108.00 -5.67 0.70 N 58 1 C2 D DG 409 ? ? N3 D DG 409 ? ? C4 D DG 409 ? ? 108.82 111.90 -3.08 0.50 N 59 1 N3 D DG 409 ? ? C4 D DG 409 ? ? C5 D DG 409 ? ? 132.43 128.60 3.83 0.50 N 60 1 N3 D DG 409 ? ? C4 D DG 409 ? ? N9 D DG 409 ? ? 121.94 126.00 -4.06 0.60 N 61 1 "C3'" D DC 410 ? ? "C2'" D DC 410 ? ? "C1'" D DC 410 ? ? 97.10 102.40 -5.30 0.80 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A2M P P N N 1 A2M OP1 O N N 2 A2M OP3 O N N 3 A2M "O5'" O N N 4 A2M "C5'" C N N 5 A2M "C4'" C N R 6 A2M "O4'" O N N 7 A2M "C3'" C N R 8 A2M "O3'" O N N 9 A2M "C2'" C N R 10 A2M "O2'" O N N 11 A2M "C1'" C N R 12 A2M "CM'" C N N 13 A2M N9 N Y N 14 A2M C8 C Y N 15 A2M N7 N Y N 16 A2M C5 C Y N 17 A2M C6 C Y N 18 A2M N6 N N N 19 A2M N1 N Y N 20 A2M C2 C Y N 21 A2M N3 N Y N 22 A2M C4 C Y N 23 A2M HOP3 H N N 24 A2M "H5'" H N N 25 A2M "H5''" H N N 26 A2M "H4'" H N N 27 A2M "H3'" H N N 28 A2M "HO3'" H N N 29 A2M "H2'" H N N 30 A2M "H1'" H N N 31 A2M "HM'1" H N N 32 A2M "HM'2" H N N 33 A2M "HM'3" H N N 34 A2M H8 H N N 35 A2M H61 H N N 36 A2M H62 H N N 37 A2M H2 H N N 38 A2M OP2 O N N 39 A2M HOP2 H N N 40 DA OP3 O N N 41 DA P P N N 42 DA OP1 O N N 43 DA OP2 O N N 44 DA "O5'" O N N 45 DA "C5'" C N N 46 DA "C4'" C N R 47 DA "O4'" O N N 48 DA "C3'" C N S 49 DA "O3'" O N N 50 DA "C2'" C N N 51 DA "C1'" C N R 52 DA N9 N Y N 53 DA C8 C Y N 54 DA N7 N Y N 55 DA C5 C Y N 56 DA C6 C Y N 57 DA N6 N N N 58 DA N1 N Y N 59 DA C2 C Y N 60 DA N3 N Y N 61 DA C4 C Y N 62 DA HOP3 H N N 63 DA HOP2 H N N 64 DA "H5'" H N N 65 DA "H5''" H N N 66 DA "H4'" H N N 67 DA "H3'" H N N 68 DA "HO3'" H N N 69 DA "H2'" H N N 70 DA "H2''" H N N 71 DA "H1'" H N N 72 DA H8 H N N 73 DA H61 H N N 74 DA H62 H N N 75 DA H2 H N N 76 DC OP3 O N N 77 DC P P N N 78 DC OP1 O N N 79 DC OP2 O N N 80 DC "O5'" O N N 81 DC "C5'" C N N 82 DC "C4'" C N R 83 DC "O4'" O N N 84 DC "C3'" C N S 85 DC "O3'" O N N 86 DC "C2'" C N N 87 DC "C1'" C N R 88 DC N1 N N N 89 DC C2 C N N 90 DC O2 O N N 91 DC N3 N N N 92 DC C4 C N N 93 DC N4 N N N 94 DC C5 C N N 95 DC C6 C N N 96 DC HOP3 H N N 97 DC HOP2 H N N 98 DC "H5'" H N N 99 DC "H5''" H N N 100 DC "H4'" H N N 101 DC "H3'" H N N 102 DC "HO3'" H N N 103 DC "H2'" H N N 104 DC "H2''" H N N 105 DC "H1'" H N N 106 DC H41 H N N 107 DC H42 H N N 108 DC H5 H N N 109 DC H6 H N N 110 DG OP3 O N N 111 DG P P N N 112 DG OP1 O N N 113 DG OP2 O N N 114 DG "O5'" O N N 115 DG "C5'" C N N 116 DG "C4'" C N R 117 DG "O4'" O N N 118 DG "C3'" C N S 119 DG "O3'" O N N 120 DG "C2'" C N N 121 DG "C1'" C N R 122 DG N9 N Y N 123 DG C8 C Y N 124 DG N7 N Y N 125 DG C5 C Y N 126 DG C6 C N N 127 DG O6 O N N 128 DG N1 N N N 129 DG C2 C N N 130 DG N2 N N N 131 DG N3 N N N 132 DG C4 C Y N 133 DG HOP3 H N N 134 DG HOP2 H N N 135 DG "H5'" H N N 136 DG "H5''" H N N 137 DG "H4'" H N N 138 DG "H3'" H N N 139 DG "HO3'" H N N 140 DG "H2'" H N N 141 DG "H2''" H N N 142 DG "H1'" H N N 143 DG H8 H N N 144 DG H1 H N N 145 DG H21 H N N 146 DG H22 H N N 147 DT OP3 O N N 148 DT P P N N 149 DT OP1 O N N 150 DT OP2 O N N 151 DT "O5'" O N N 152 DT "C5'" C N N 153 DT "C4'" C N R 154 DT "O4'" O N N 155 DT "C3'" C N S 156 DT "O3'" O N N 157 DT "C2'" C N N 158 DT "C1'" C N R 159 DT N1 N N N 160 DT C2 C N N 161 DT O2 O N N 162 DT N3 N N N 163 DT C4 C N N 164 DT O4 O N N 165 DT C5 C N N 166 DT C7 C N N 167 DT C6 C N N 168 DT HOP3 H N N 169 DT HOP2 H N N 170 DT "H5'" H N N 171 DT "H5''" H N N 172 DT "H4'" H N N 173 DT "H3'" H N N 174 DT "HO3'" H N N 175 DT "H2'" H N N 176 DT "H2''" H N N 177 DT "H1'" H N N 178 DT H3 H N N 179 DT H71 H N N 180 DT H72 H N N 181 DT H73 H N N 182 DT H6 H N N 183 HOH O O N N 184 HOH H1 H N N 185 HOH H2 H N N 186 NCO CO CO N N 187 NCO N1 N N N 188 NCO N2 N N N 189 NCO N3 N N N 190 NCO N4 N N N 191 NCO N5 N N N 192 NCO N6 N N N 193 NCO HN11 H N N 194 NCO HN12 H N N 195 NCO HN13 H N N 196 NCO HN21 H N N 197 NCO HN22 H N N 198 NCO HN23 H N N 199 NCO HN31 H N N 200 NCO HN32 H N N 201 NCO HN33 H N N 202 NCO HN41 H N N 203 NCO HN42 H N N 204 NCO HN43 H N N 205 NCO HN51 H N N 206 NCO HN52 H N N 207 NCO HN53 H N N 208 NCO HN61 H N N 209 NCO HN62 H N N 210 NCO HN63 H N N 211 TAF P P N N 212 TAF OP1 O N N 213 TAF OP2 O N N 214 TAF OP3 O N N 215 TAF "O5'" O N N 216 TAF N1 N N N 217 TAF C6 C N N 218 TAF C2 C N N 219 TAF O2 O N N 220 TAF N3 N N N 221 TAF C4 C N N 222 TAF O4 O N N 223 TAF C5 C N N 224 TAF C5M C N N 225 TAF "F2'" F N N 226 TAF "C2'" C N S 227 TAF "C5'" C N N 228 TAF "C4'" C N R 229 TAF "O4'" O N N 230 TAF "C1'" C N R 231 TAF "C3'" C N R 232 TAF "O3'" O N N 233 TAF HOP1 H N N 234 TAF HOP2 H N N 235 TAF H6 H N N 236 TAF H3 H N N 237 TAF H71 H N N 238 TAF H72 H N N 239 TAF H73 H N N 240 TAF "H2'" H N N 241 TAF "H5'" H N N 242 TAF "H5''" H N N 243 TAF "H4'" H N N 244 TAF "H1'" H N N 245 TAF "H3'" H N N 246 TAF "HO'3" H N N 247 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A2M P OP1 doub N N 1 A2M P OP3 sing N N 2 A2M P "O5'" sing N N 3 A2M OP3 HOP3 sing N N 4 A2M "O5'" "C5'" sing N N 5 A2M "C5'" "C4'" sing N N 6 A2M "C5'" "H5'" sing N N 7 A2M "C5'" "H5''" sing N N 8 A2M "C4'" "O4'" sing N N 9 A2M "C4'" "C3'" sing N N 10 A2M "C4'" "H4'" sing N N 11 A2M "O4'" "C1'" sing N N 12 A2M "C3'" "O3'" sing N N 13 A2M "C3'" "C2'" sing N N 14 A2M "C3'" "H3'" sing N N 15 A2M "O3'" "HO3'" sing N N 16 A2M "C2'" "O2'" sing N N 17 A2M "C2'" "C1'" sing N N 18 A2M "C2'" "H2'" sing N N 19 A2M "O2'" "CM'" sing N N 20 A2M "C1'" N9 sing N N 21 A2M "C1'" "H1'" sing N N 22 A2M "CM'" "HM'1" sing N N 23 A2M "CM'" "HM'2" sing N N 24 A2M "CM'" "HM'3" sing N N 25 A2M N9 C8 sing Y N 26 A2M N9 C4 sing Y N 27 A2M C8 N7 doub Y N 28 A2M C8 H8 sing N N 29 A2M N7 C5 sing Y N 30 A2M C5 C6 sing Y N 31 A2M C5 C4 doub Y N 32 A2M C6 N6 sing N N 33 A2M C6 N1 doub Y N 34 A2M N6 H61 sing N N 35 A2M N6 H62 sing N N 36 A2M N1 C2 sing Y N 37 A2M C2 N3 doub Y N 38 A2M C2 H2 sing N N 39 A2M N3 C4 sing Y N 40 A2M P OP2 sing N N 41 A2M OP2 HOP2 sing N N 42 DA OP3 P sing N N 43 DA OP3 HOP3 sing N N 44 DA P OP1 doub N N 45 DA P OP2 sing N N 46 DA P "O5'" sing N N 47 DA OP2 HOP2 sing N N 48 DA "O5'" "C5'" sing N N 49 DA "C5'" "C4'" sing N N 50 DA "C5'" "H5'" sing N N 51 DA "C5'" "H5''" sing N N 52 DA "C4'" "O4'" sing N N 53 DA "C4'" "C3'" sing N N 54 DA "C4'" "H4'" sing N N 55 DA "O4'" "C1'" sing N N 56 DA "C3'" "O3'" sing N N 57 DA "C3'" "C2'" sing N N 58 DA "C3'" "H3'" sing N N 59 DA "O3'" "HO3'" sing N N 60 DA "C2'" "C1'" sing N N 61 DA "C2'" "H2'" sing N N 62 DA "C2'" "H2''" sing N N 63 DA "C1'" N9 sing N N 64 DA "C1'" "H1'" sing N N 65 DA N9 C8 sing Y N 66 DA N9 C4 sing Y N 67 DA C8 N7 doub Y N 68 DA C8 H8 sing N N 69 DA N7 C5 sing Y N 70 DA C5 C6 sing Y N 71 DA C5 C4 doub Y N 72 DA C6 N6 sing N N 73 DA C6 N1 doub Y N 74 DA N6 H61 sing N N 75 DA N6 H62 sing N N 76 DA N1 C2 sing Y N 77 DA C2 N3 doub Y N 78 DA C2 H2 sing N N 79 DA N3 C4 sing Y N 80 DC OP3 P sing N N 81 DC OP3 HOP3 sing N N 82 DC P OP1 doub N N 83 DC P OP2 sing N N 84 DC P "O5'" sing N N 85 DC OP2 HOP2 sing N N 86 DC "O5'" "C5'" sing N N 87 DC "C5'" "C4'" sing N N 88 DC "C5'" "H5'" sing N N 89 DC "C5'" "H5''" sing N N 90 DC "C4'" "O4'" sing N N 91 DC "C4'" "C3'" sing N N 92 DC "C4'" "H4'" sing N N 93 DC "O4'" "C1'" sing N N 94 DC "C3'" "O3'" sing N N 95 DC "C3'" "C2'" sing N N 96 DC "C3'" "H3'" sing N N 97 DC "O3'" "HO3'" sing N N 98 DC "C2'" "C1'" sing N N 99 DC "C2'" "H2'" sing N N 100 DC "C2'" "H2''" sing N N 101 DC "C1'" N1 sing N N 102 DC "C1'" "H1'" sing N N 103 DC N1 C2 sing N N 104 DC N1 C6 sing N N 105 DC C2 O2 doub N N 106 DC C2 N3 sing N N 107 DC N3 C4 doub N N 108 DC C4 N4 sing N N 109 DC C4 C5 sing N N 110 DC N4 H41 sing N N 111 DC N4 H42 sing N N 112 DC C5 C6 doub N N 113 DC C5 H5 sing N N 114 DC C6 H6 sing N N 115 DG OP3 P sing N N 116 DG OP3 HOP3 sing N N 117 DG P OP1 doub N N 118 DG P OP2 sing N N 119 DG P "O5'" sing N N 120 DG OP2 HOP2 sing N N 121 DG "O5'" "C5'" sing N N 122 DG "C5'" "C4'" sing N N 123 DG "C5'" "H5'" sing N N 124 DG "C5'" "H5''" sing N N 125 DG "C4'" "O4'" sing N N 126 DG "C4'" "C3'" sing N N 127 DG "C4'" "H4'" sing N N 128 DG "O4'" "C1'" sing N N 129 DG "C3'" "O3'" sing N N 130 DG "C3'" "C2'" sing N N 131 DG "C3'" "H3'" sing N N 132 DG "O3'" "HO3'" sing N N 133 DG "C2'" "C1'" sing N N 134 DG "C2'" "H2'" sing N N 135 DG "C2'" "H2''" sing N N 136 DG "C1'" N9 sing N N 137 DG "C1'" "H1'" sing N N 138 DG N9 C8 sing Y N 139 DG N9 C4 sing Y N 140 DG C8 N7 doub Y N 141 DG C8 H8 sing N N 142 DG N7 C5 sing Y N 143 DG C5 C6 sing N N 144 DG C5 C4 doub Y N 145 DG C6 O6 doub N N 146 DG C6 N1 sing N N 147 DG N1 C2 sing N N 148 DG N1 H1 sing N N 149 DG C2 N2 sing N N 150 DG C2 N3 doub N N 151 DG N2 H21 sing N N 152 DG N2 H22 sing N N 153 DG N3 C4 sing N N 154 DT OP3 P sing N N 155 DT OP3 HOP3 sing N N 156 DT P OP1 doub N N 157 DT P OP2 sing N N 158 DT P "O5'" sing N N 159 DT OP2 HOP2 sing N N 160 DT "O5'" "C5'" sing N N 161 DT "C5'" "C4'" sing N N 162 DT "C5'" "H5'" sing N N 163 DT "C5'" "H5''" sing N N 164 DT "C4'" "O4'" sing N N 165 DT "C4'" "C3'" sing N N 166 DT "C4'" "H4'" sing N N 167 DT "O4'" "C1'" sing N N 168 DT "C3'" "O3'" sing N N 169 DT "C3'" "C2'" sing N N 170 DT "C3'" "H3'" sing N N 171 DT "O3'" "HO3'" sing N N 172 DT "C2'" "C1'" sing N N 173 DT "C2'" "H2'" sing N N 174 DT "C2'" "H2''" sing N N 175 DT "C1'" N1 sing N N 176 DT "C1'" "H1'" sing N N 177 DT N1 C2 sing N N 178 DT N1 C6 sing N N 179 DT C2 O2 doub N N 180 DT C2 N3 sing N N 181 DT N3 C4 sing N N 182 DT N3 H3 sing N N 183 DT C4 O4 doub N N 184 DT C4 C5 sing N N 185 DT C5 C7 sing N N 186 DT C5 C6 doub N N 187 DT C7 H71 sing N N 188 DT C7 H72 sing N N 189 DT C7 H73 sing N N 190 DT C6 H6 sing N N 191 HOH O H1 sing N N 192 HOH O H2 sing N N 193 NCO CO N1 sing N N 194 NCO CO N2 sing N N 195 NCO CO N3 sing N N 196 NCO CO N4 sing N N 197 NCO CO N5 sing N N 198 NCO CO N6 sing N N 199 NCO N1 HN11 sing N N 200 NCO N1 HN12 sing N N 201 NCO N1 HN13 sing N N 202 NCO N2 HN21 sing N N 203 NCO N2 HN22 sing N N 204 NCO N2 HN23 sing N N 205 NCO N3 HN31 sing N N 206 NCO N3 HN32 sing N N 207 NCO N3 HN33 sing N N 208 NCO N4 HN41 sing N N 209 NCO N4 HN42 sing N N 210 NCO N4 HN43 sing N N 211 NCO N5 HN51 sing N N 212 NCO N5 HN52 sing N N 213 NCO N5 HN53 sing N N 214 NCO N6 HN61 sing N N 215 NCO N6 HN62 sing N N 216 NCO N6 HN63 sing N N 217 TAF P OP1 sing N N 218 TAF P OP2 sing N N 219 TAF P OP3 doub N N 220 TAF P "O5'" sing N N 221 TAF OP1 HOP1 sing N N 222 TAF OP2 HOP2 sing N N 223 TAF "O5'" "C5'" sing N N 224 TAF N1 C6 sing N N 225 TAF N1 C2 sing N N 226 TAF N1 "C1'" sing N N 227 TAF C6 C5 doub N N 228 TAF C6 H6 sing N N 229 TAF C2 O2 doub N N 230 TAF C2 N3 sing N N 231 TAF N3 C4 sing N N 232 TAF N3 H3 sing N N 233 TAF C4 O4 doub N N 234 TAF C4 C5 sing N N 235 TAF C5 C5M sing N N 236 TAF C5M H71 sing N N 237 TAF C5M H72 sing N N 238 TAF C5M H73 sing N N 239 TAF "F2'" "C2'" sing N N 240 TAF "C2'" "C1'" sing N N 241 TAF "C2'" "C3'" sing N N 242 TAF "C2'" "H2'" sing N N 243 TAF "C5'" "C4'" sing N N 244 TAF "C5'" "H5'" sing N N 245 TAF "C5'" "H5''" sing N N 246 TAF "C4'" "O4'" sing N N 247 TAF "C4'" "C3'" sing N N 248 TAF "C4'" "H4'" sing N N 249 TAF "O4'" "C1'" sing N N 250 TAF "C1'" "H1'" sing N N 251 TAF "C3'" "O3'" sing N N 252 TAF "C3'" "H3'" sing N N 253 TAF "O3'" "HO'3" sing N N 254 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2FIL 'double helix' 2FIL 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 10 1_555 -0.374 -0.057 -0.245 -10.216 -8.240 2.012 1 A_DG101:DC210_B A 101 ? B 210 ? 19 1 1 A DC 2 1_555 B DG 9 1_555 0.175 -0.030 0.155 -18.146 -2.051 -4.550 2 A_DC102:DG209_B A 102 ? B 209 ? 19 1 1 A DG 3 1_555 B DC 8 1_555 -0.609 -0.128 0.267 -11.538 -14.387 9.658 3 A_DG103:DC208_B A 103 ? B 208 ? 19 1 1 A DT 4 1_555 B DA 7 1_555 0.433 -0.471 0.096 -14.941 -3.133 4.182 4 A_DT104:DA207_B A 104 ? B 207 ? 20 1 1 A A2M 5 1_555 B TAF 6 1_555 -1.244 0.088 0.339 -1.778 -23.726 26.478 5 A_A2M105:TAF206_B A 105 ? B 206 ? ? 1 1 A TAF 6 1_555 B A2M 5 1_555 1.107 -0.133 -0.014 0.698 -13.809 15.557 6 A_TAF106:A2M205_B A 106 ? B 205 ? ? 1 1 A DA 7 1_555 B DT 4 1_555 0.740 -0.443 -0.060 13.076 4.957 4.842 7 A_DA107:DT204_B A 107 ? B 204 ? 20 1 1 A DC 8 1_555 B DG 3 1_555 0.031 -0.729 -0.075 10.275 -11.249 -2.613 8 A_DC108:DG203_B A 108 ? B 203 ? 19 1 1 A DG 9 1_555 B DC 2 1_555 -0.073 -0.045 0.106 11.576 -4.031 7.144 9 A_DG109:DC202_B A 109 ? B 202 ? 19 1 1 A DC 10 1_555 B DG 1 1_555 0.438 0.042 -0.273 13.298 -11.561 1.917 10 A_DC110:DG201_B A 110 ? B 201 ? 19 1 1 C DG 1 1_555 D DC 10 1_555 -1.140 -0.392 0.018 -11.027 -8.462 2.107 11 C_DG301:DC410_D C 301 ? D 410 ? 19 1 1 C DC 2 1_555 D DG 9 1_555 0.697 -0.825 0.425 -15.857 -5.875 1.172 12 C_DC302:DG409_D C 302 ? D 409 ? 19 1 1 C DG 3 1_555 D DC 8 1_555 -0.415 -0.434 0.115 -7.638 -6.634 3.050 13 C_DG303:DC408_D C 303 ? D 408 ? 19 1 1 C DT 4 1_555 D DA 7 1_555 -0.759 -0.359 0.177 -7.540 -0.044 -6.627 14 C_DT304:DA407_D C 304 ? D 407 ? 20 1 1 C A2M 5 1_555 D TAF 6 1_555 -0.407 -0.109 0.064 2.169 -19.815 11.951 15 C_A2M305:TAF406_D C 305 ? D 406 ? ? 1 1 C TAF 6 1_555 D A2M 5 1_555 0.582 0.201 0.357 -2.517 -15.345 10.249 16 C_TAF306:A2M405_D C 306 ? D 405 ? ? 1 1 C DA 7 1_555 D DT 4 1_555 -0.367 -0.487 0.221 10.826 3.707 -2.645 17 C_DA307:DT404_D C 307 ? D 404 ? 20 1 1 C DC 8 1_555 D DG 3 1_555 -0.152 -0.521 0.134 9.580 -11.938 -1.301 18 C_DC308:DG403_D C 308 ? D 403 ? 19 1 1 C DG 9 1_555 D DC 2 1_555 0.338 -0.335 0.294 13.963 0.105 -7.983 19 C_DG309:DC402_D C 309 ? D 402 ? 19 1 1 C DC 10 1_555 D DG 1 1_555 0.119 -0.187 -0.275 16.029 -10.490 -1.414 20 C_DC310:DG401_D C 310 ? D 401 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 10 1_555 A DC 2 1_555 B DG 9 1_555 -0.243 -1.354 3.399 0.308 0.385 42.718 -1.899 0.366 3.385 0.529 -0.423 42.720 1 AA_DG101DC102:DG209DC210_BB A 101 ? B 210 ? A 102 ? B 209 ? 1 A DC 2 1_555 B DG 9 1_555 A DG 3 1_555 B DC 8 1_555 0.971 -1.604 3.076 -0.776 12.475 22.816 -6.370 -2.335 1.918 28.916 1.798 25.975 2 AA_DC102DG103:DC208DG209_BB A 102 ? B 209 ? A 103 ? B 208 ? 1 A DG 3 1_555 B DC 8 1_555 A DT 4 1_555 B DA 7 1_555 -0.502 -0.327 3.457 4.010 -1.711 40.757 -0.270 1.178 3.405 -2.448 -5.738 40.980 3 AA_DG103DT104:DA207DC208_BB A 103 ? B 208 ? A 104 ? B 207 ? 1 A DT 4 1_555 B DA 7 1_555 A A2M 5 1_555 B TAF 6 1_555 0.802 -0.759 2.915 -3.281 26.655 14.217 -5.472 -2.028 0.629 62.133 7.648 30.326 4 AA_DT104A2M105:TAF206DA207_BB A 104 ? B 207 ? A 105 ? B 206 ? 1 A A2M 5 1_555 B TAF 6 1_555 A TAF 6 1_555 B A2M 5 1_555 -0.951 -0.225 3.252 -0.567 18.843 38.714 -2.160 1.244 2.865 26.593 0.800 42.902 5 AA_A2M105TAF106:A2M205TAF206_BB A 105 ? B 206 ? A 106 ? B 205 ? 1 A TAF 6 1_555 B A2M 5 1_555 A DA 7 1_555 B DT 4 1_555 -0.651 -0.770 3.096 1.481 18.795 26.812 -4.219 1.382 2.088 35.495 -2.797 32.677 6 AA_TAF106DA107:DT204A2M205_BB A 106 ? B 205 ? A 107 ? B 204 ? 1 A DA 7 1_555 B DT 4 1_555 A DC 8 1_555 B DG 3 1_555 0.020 -0.884 3.430 -2.228 0.862 27.805 -2.047 -0.596 3.389 1.789 4.626 27.905 7 AA_DA107DC108:DG203DT204_BB A 107 ? B 204 ? A 108 ? B 203 ? 1 A DC 8 1_555 B DG 3 1_555 A DG 9 1_555 B DC 2 1_555 -0.036 -1.504 3.270 -1.138 10.999 29.778 -4.616 -0.127 2.567 20.533 2.124 31.721 8 AA_DC108DG109:DC202DG203_BB A 108 ? B 203 ? A 109 ? B 202 ? 1 A DG 9 1_555 B DC 2 1_555 A DC 10 1_555 B DG 1 1_555 -0.183 -1.310 3.219 0.127 -0.184 36.876 -2.047 0.307 3.225 -0.291 -0.201 36.876 9 AA_DG109DC110:DG201DC202_BB A 109 ? B 202 ? A 110 ? B 201 ? 1 C DG 1 1_555 D DC 10 1_555 C DC 2 1_555 D DG 9 1_555 -0.559 -1.248 3.433 -3.191 1.216 44.355 -1.767 0.429 3.430 1.607 4.220 44.479 10 CC_DG301DC302:DG409DC410_DD C 301 ? D 410 ? C 302 ? D 409 ? 1 C DC 2 1_555 D DG 9 1_555 C DG 3 1_555 D DC 8 1_555 -0.133 -1.590 3.009 3.159 5.970 26.094 -4.734 0.985 2.555 12.949 -6.851 26.939 11 CC_DC302DG303:DC408DG409_DD C 302 ? D 409 ? C 303 ? D 408 ? 1 C DG 3 1_555 D DC 8 1_555 C DT 4 1_555 D DA 7 1_555 -0.601 -0.964 3.330 0.506 5.039 27.216 -3.224 1.377 3.093 10.592 -1.063 27.674 12 CC_DG303DT304:DA407DC408_DD C 303 ? D 408 ? C 304 ? D 407 ? 1 C DT 4 1_555 D DA 7 1_555 C A2M 5 1_555 D TAF 6 1_555 0.969 -0.561 3.243 -2.529 19.209 32.368 -3.232 -1.814 2.464 31.217 4.111 37.591 13 CC_DT304A2M305:TAF406DA407_DD C 304 ? D 407 ? C 305 ? D 406 ? 1 C A2M 5 1_555 D TAF 6 1_555 C TAF 6 1_555 D A2M 5 1_555 0.116 -0.707 3.580 -1.712 16.830 30.113 -3.933 -0.475 2.798 29.636 3.014 34.444 14 CC_A2M305TAF306:A2M405TAF406_DD C 305 ? D 406 ? C 306 ? D 405 ? 1 C TAF 6 1_555 D A2M 5 1_555 C DA 7 1_555 D DT 4 1_555 -0.718 -0.661 2.971 1.408 23.938 21.177 -4.793 1.518 1.465 49.047 -2.884 31.889 15 CC_TAF306DA307:DT404A2M405_DD C 306 ? D 405 ? C 307 ? D 404 ? 1 C DA 7 1_555 D DT 4 1_555 C DC 8 1_555 D DG 3 1_555 0.293 -0.792 3.394 -2.061 -0.570 32.797 -1.299 -0.883 3.383 -1.009 3.645 32.865 16 CC_DA307DC308:DG403DT404_DD C 307 ? D 404 ? C 308 ? D 403 ? 1 C DC 8 1_555 D DG 3 1_555 C DG 9 1_555 D DC 2 1_555 -0.276 -1.588 3.213 -2.888 7.806 33.237 -3.845 0.045 2.793 13.387 4.953 34.235 17 CC_DC308DG309:DC402DG403_DD C 308 ? D 403 ? C 309 ? D 402 ? 1 C DG 9 1_555 D DC 2 1_555 C DC 10 1_555 D DG 1 1_555 0.853 -1.287 3.273 5.600 1.013 38.690 -2.047 -0.592 3.327 1.519 -8.397 39.090 18 CC_DG309DC310:DG401DC402_DD C 309 ? D 402 ? C 310 ? D 401 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'COBALT HEXAMMINE(III)' NCO 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1DPL _pdbx_initial_refinement_model.details 'NDB entry AD0007/PDB entry 1DPL' #