HEADER DNA 29-DEC-05 2FIL TITLE CRYSTAL STRUCTURE ANALYSIS OF THE A-DNA DECAMER GCGT-2'OMEA-FAT-ACGC, TITLE 2 WITH INCORPORATED 2'-O-METHYLATED-ADENOSINE (2'OMEA) AND 2'- TITLE 3 FLUOROARABINO-THYMIDINE (FAT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*GP*CP*GP*TP*(A2M)P*(TAF)P*AP*CP*GP*C)-3'; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS 2'-FLUOROARABINO ACID, SUGAR MODIFICATIONS, A-FORM DNA, DNA EXPDTA X-RAY DIFFRACTION AUTHOR M.EGLI,F.LI REVDAT 5 30-AUG-23 2FIL 1 REMARK LINK REVDAT 4 18-OCT-17 2FIL 1 REMARK REVDAT 3 13-JUL-11 2FIL 1 VERSN REVDAT 2 24-FEB-09 2FIL 1 VERSN REVDAT 1 23-MAY-06 2FIL 0 JRNL AUTH F.LI,S.SARKHEL,C.J.WILDS,Z.WAWRZAK,T.P.PRAKASH,M.MANOHARAN, JRNL AUTH 2 M.EGLI JRNL TITL 2'-FLUOROARABINO- AND ARABINONUCLEIC ACID SHOW DIFFERENT JRNL TITL 2 CONFORMATIONS, RESULTING IN DEVIATING RNA AFFINITIES AND JRNL TITL 3 PROCESSING OF THEIR HETERODUPLEXES WITH RNA BY RNASE H. JRNL REF BIOCHEMISTRY V. 45 4141 2006 JRNL REFN ISSN 0006-2960 JRNL PMID 16566588 JRNL DOI 10.1021/BI052322R REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 15695 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 805 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.69 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.73 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1111 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.3330 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.3850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 819 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 169 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.83000 REMARK 3 B22 (A**2) : -3.90000 REMARK 3 B33 (A**2) : 2.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.35000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.149 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.130 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.429 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.982 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 958 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 409 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1509 ; 2.590 ; 3.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1010 ; 1.881 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 164 ; 0.226 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 416 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 250 ; 0.285 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 540 ; 0.337 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 322 ; 0.285 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 226 ; 0.123 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 164 ; 0.454 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.105 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.192 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 47 ; 0.292 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.316 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1389 ; 8.055 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1472 ; 9.395 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 101 A 110 REMARK 3 RESIDUE RANGE : B 201 B 210 REMARK 3 ORIGIN FOR THE GROUP (A): 22.5660 1.2675 9.8383 REMARK 3 T TENSOR REMARK 3 T11: 0.0401 T22: 0.0357 REMARK 3 T33: 0.0123 T12: -0.0084 REMARK 3 T13: -0.0003 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 0.2315 L22: 3.4926 REMARK 3 L33: 0.7979 L12: -0.2436 REMARK 3 L13: -0.2431 L23: -0.4661 REMARK 3 S TENSOR REMARK 3 S11: 0.0782 S12: 0.0298 S13: -0.0997 REMARK 3 S21: 0.2197 S22: -0.0577 S23: 0.2128 REMARK 3 S31: -0.1573 S32: 0.0414 S33: -0.0205 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 301 C 310 REMARK 3 RESIDUE RANGE : D 401 D 410 REMARK 3 ORIGIN FOR THE GROUP (A): 25.4251 18.5772 26.4573 REMARK 3 T TENSOR REMARK 3 T11: 0.0086 T22: 0.0527 REMARK 3 T33: -0.0008 T12: -0.0041 REMARK 3 T13: 0.0014 T23: 0.0116 REMARK 3 L TENSOR REMARK 3 L11: 0.6377 L22: 3.4513 REMARK 3 L33: 1.1020 L12: -0.3380 REMARK 3 L13: -0.0007 L23: -0.0695 REMARK 3 S TENSOR REMARK 3 S11: 0.0172 S12: 0.0847 S13: 0.0861 REMARK 3 S21: 0.1555 S22: -0.0262 S23: -0.2069 REMARK 3 S31: 0.1005 S32: -0.0335 S33: 0.0090 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2FIL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JAN-06. REMARK 100 THE DEPOSITION ID IS D_1000035920. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUN-03 REMARK 200 TEMPERATURE (KELVIN) : 103 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 5ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15695 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.34700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: NDB ENTRY AD0007/PDB ENTRY 1DPL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: FINAL DROPLET COMPOSITION: 1 MM REMARK 280 OLIGONUCLEOTIDE, 10% MPD, 20 MM SODIUM CACODYLATE, PH 5.5, 10 MM REMARK 280 COBALT HEXAMINE, 6 MM NACL AND 80 MM KCL., VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.59000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DUPLEX AND CORRESPONDS TO THE REMARK 300 CRYSTALLOGRAPHIC ASYMMETRIC UNIT, HENCE NO SYMMETRY OPERATORS ARE REMARK 300 NEEDED REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC B 202 N3 DC B 202 C4 -0.043 REMARK 500 DC D 402 C2 DC D 402 O2 0.056 REMARK 500 DC D 402 N3 DC D 402 C4 0.048 REMARK 500 DG D 403 N7 DG D 403 C8 -0.044 REMARK 500 DG D 403 C8 DG D 403 N9 -0.049 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG A 103 O4' - C4' - C3' ANGL. DEV. = -3.4 DEGREES REMARK 500 DT A 104 C5 - C4 - O4 ANGL. DEV. = -4.2 DEGREES REMARK 500 A2M A 105 O3' - P - OP2 ANGL. DEV. = 7.6 DEGREES REMARK 500 DA A 107 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DG A 109 O4' - C1' - C2' ANGL. DEV. = 4.0 DEGREES REMARK 500 DG A 109 O4' - C1' - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 DC A 110 O4' - C1' - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 DC B 202 C6 - N1 - C2 ANGL. DEV. = 2.8 DEGREES REMARK 500 DC B 202 N3 - C4 - N4 ANGL. DEV. = -5.5 DEGREES REMARK 500 DG B 203 O4' - C4' - C3' ANGL. DEV. = -5.3 DEGREES REMARK 500 DG B 203 O4' - C1' - N9 ANGL. DEV. = -10.7 DEGREES REMARK 500 DG B 203 C8 - N9 - C1' ANGL. DEV. = 10.7 DEGREES REMARK 500 DG B 203 C4 - N9 - C1' ANGL. DEV. = -10.4 DEGREES REMARK 500 DT B 204 O5' - C5' - C4' ANGL. DEV. = -5.4 DEGREES REMARK 500 TAF B 206 C3' - O3' - P ANGL. DEV. = 7.2 DEGREES REMARK 500 DA B 207 O4' - C1' - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 DG B 209 O4' - C1' - N9 ANGL. DEV. = 5.3 DEGREES REMARK 500 DC B 210 O5' - C5' - C4' ANGL. DEV. = -6.8 DEGREES REMARK 500 DC B 210 O4' - C4' - C3' ANGL. DEV. = -3.4 DEGREES REMARK 500 DC B 210 C4' - C3' - C2' ANGL. DEV. = -4.9 DEGREES REMARK 500 DC C 302 O4' - C4' - C3' ANGL. DEV. = -5.5 DEGREES REMARK 500 DT C 304 N3 - C4 - O4 ANGL. DEV. = 6.2 DEGREES REMARK 500 DT C 304 C3' - O3' - P ANGL. DEV. = -8.6 DEGREES REMARK 500 A2M C 305 O3' - P - OP2 ANGL. DEV. = 7.8 DEGREES REMARK 500 DA C 307 O3' - P - O5' ANGL. DEV. = -12.8 DEGREES REMARK 500 DA C 307 C3' - C2' - C1' ANGL. DEV. = -7.3 DEGREES REMARK 500 DA C 307 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 DC C 308 O4' - C4' - C3' ANGL. DEV. = -4.6 DEGREES REMARK 500 DC C 308 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG C 309 O4' - C1' - N9 ANGL. DEV. = 4.8 DEGREES REMARK 500 DG C 309 C4 - C5 - N7 ANGL. DEV. = 2.7 DEGREES REMARK 500 DC C 310 O4' - C4' - C3' ANGL. DEV. = -2.7 DEGREES REMARK 500 DG D 401 O4' - C1' - N9 ANGL. DEV. = 4.8 DEGREES REMARK 500 DC D 402 O5' - C5' - C4' ANGL. DEV. = -6.5 DEGREES REMARK 500 DC D 402 O4' - C4' - C3' ANGL. DEV. = -3.2 DEGREES REMARK 500 DC D 402 O4' - C1' - C2' ANGL. DEV. = 3.4 DEGREES REMARK 500 DC D 402 C6 - N1 - C2 ANGL. DEV. = 5.0 DEGREES REMARK 500 DC D 402 N1 - C2 - N3 ANGL. DEV. = -4.8 DEGREES REMARK 500 DC D 402 N3 - C2 - O2 ANGL. DEV. = 7.3 DEGREES REMARK 500 DC D 402 N3 - C4 - N4 ANGL. DEV. = 7.5 DEGREES REMARK 500 DC D 402 C5 - C4 - N4 ANGL. DEV. = -8.1 DEGREES REMARK 500 DG D 403 C4' - C3' - C2' ANGL. DEV. = -4.9 DEGREES REMARK 500 DG D 403 C4 - C5 - N7 ANGL. DEV. = -3.4 DEGREES REMARK 500 DG D 403 C5 - N7 - C8 ANGL. DEV. = 3.7 DEGREES REMARK 500 DT D 404 O4' - C4' - C3' ANGL. DEV. = -2.8 DEGREES REMARK 500 DT D 404 O4' - C1' - N1 ANGL. DEV. = -4.4 DEGREES REMARK 500 DT D 404 N3 - C2 - O2 ANGL. DEV. = 4.1 DEGREES REMARK 500 DT D 404 N3 - C4 - O4 ANGL. DEV. = -4.3 DEGREES REMARK 500 DT D 404 C4 - C5 - C7 ANGL. DEV. = 12.5 DEGREES REMARK 500 DT D 404 C6 - C5 - C7 ANGL. DEV. = -9.2 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 61 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NCO B 3211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NCO A 3212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NCO A 3213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NCO C 3214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NCO D 3215 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NCO D 3216 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NCO B 3217 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2FIH RELATED DB: PDB REMARK 900 RELATED ID: 2FII RELATED DB: PDB REMARK 900 RELATED ID: 2FIJ RELATED DB: PDB DBREF 2FIL A 101 110 PDB 2FIL 2FIL 101 110 DBREF 2FIL B 201 210 PDB 2FIL 2FIL 201 210 DBREF 2FIL C 301 310 PDB 2FIL 2FIL 301 310 DBREF 2FIL D 401 410 PDB 2FIL 2FIL 401 410 SEQRES 1 A 10 DG DC DG DT A2M TAF DA DC DG DC SEQRES 1 B 10 DG DC DG DT A2M TAF DA DC DG DC SEQRES 1 C 10 DG DC DG DT A2M TAF DA DC DG DC SEQRES 1 D 10 DG DC DG DT A2M TAF DA DC DG DC MODRES 2FIL A2M A 105 A 2'-O-METHYL-ADENOSINE-5'-MONOPHOSPHATE MODRES 2FIL TAF A 106 DT MODRES 2FIL A2M B 205 A 2'-O-METHYL-ADENOSINE-5'-MONOPHOSPHATE MODRES 2FIL TAF B 206 DT MODRES 2FIL A2M C 305 A 2'-O-METHYL-ADENOSINE-5'-MONOPHOSPHATE MODRES 2FIL TAF C 306 DT MODRES 2FIL A2M D 405 A 2'-O-METHYL-ADENOSINE-5'-MONOPHOSPHATE MODRES 2FIL TAF D 406 DT HET A2M A 105 23 HET TAF A 106 21 HET A2M B 205 23 HET TAF B 206 21 HET A2M C 305 23 HET TAF C 306 21 HET A2M D 405 23 HET TAF D 406 21 HET NCO A3212 7 HET NCO A3213 7 HET NCO B3211 7 HET NCO B3217 7 HET NCO C3214 7 HET NCO D3215 7 HET NCO D3216 7 HETNAM A2M 2'-O-METHYLADENOSINE 5'-(DIHYDROGEN PHOSPHATE) HETNAM TAF 2'-DEOXY-2'-FLUORO-ARABINO-FURANOSYL THYMINE-5'- HETNAM 2 TAF PHOSPHATE HETNAM NCO COBALT HEXAMMINE(III) FORMUL 1 A2M 4(C11 H16 N5 O7 P) FORMUL 1 TAF 4(C10 H14 F N2 O8 P) FORMUL 5 NCO 7(CO H18 N6 3+) FORMUL 12 HOH *169(H2 O) LINK O3' DT A 104 P A2M A 105 1555 1555 1.60 LINK O3' A2M A 105 P TAF A 106 1555 1555 1.58 LINK O3' TAF A 106 P DA A 107 1555 1555 1.60 LINK O3' DT B 204 P A2M B 205 1555 1555 1.61 LINK O3' A2M B 205 P TAF B 206 1555 1555 1.57 LINK O3' TAF B 206 P DA B 207 1555 1555 1.60 LINK O3' DT C 304 P A2M C 305 1555 1555 1.60 LINK O3' A2M C 305 P TAF C 306 1555 1555 1.61 LINK O3' TAF C 306 P DA C 307 1555 1555 1.61 LINK O3' DT D 404 P A2M D 405 1555 1555 1.59 LINK O3' A2M D 405 P TAF D 406 1555 1555 1.57 LINK O3' TAF D 406 P DA D 407 1555 1555 1.60 SITE 1 AC1 4 DC B 202 DG B 203 DT B 204 HOH B1072 SITE 1 AC2 7 DC A 102 DG A 103 DT A 104 HOH A1082 SITE 2 AC2 7 HOH A1283 HOH B1072 NCO B3217 SITE 1 AC3 3 DC A 102 DC B 202 DG D 409 SITE 1 AC4 8 DC C 302 DG C 303 DT C 304 HOH C1089 SITE 2 AC4 8 HOH C1113 TAF D 406 DA D 407 HOH D1017 SITE 1 AC5 8 DG D 403 DT D 404 HOH D1015 HOH D1021 SITE 2 AC5 8 HOH D1034 HOH D1086 HOH D1088 HOH D1159 SITE 1 AC6 2 DC C 302 DC D 402 SITE 1 AC7 4 NCO A3212 DT B 204 A2M B 205 HOH B1010 CRYST1 32.733 69.180 32.831 90.00 92.21 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030550 0.000000 0.001179 0.00000 SCALE2 0.000000 0.014455 0.000000 0.00000 SCALE3 0.000000 0.000000 0.030482 0.00000