HEADER ENDOCYTOSIS/EXOCYTOSIS 02-JAN-06 2FJI TITLE CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF THE EXOCYST SUBUNIT TITLE 2 SEC6P COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXOCYST COMPLEX COMPONENT SEC6; COMPND 3 CHAIN: 1, 2; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN SEC6CT2 (RESIDUES 411-805); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: SEC6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3), BL21(DE3) RIL-X; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS EXOCYST COMPLEX, EXOCYTOSIS, TANDEM HELICAL BUNDLES, ENDOCYTOSIS- KEYWDS 2 EXOCYTOSIS COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.V.SIVARAM,M.MUNSON REVDAT 5 14-FEB-24 2FJI 1 REMARK SEQADV REVDAT 4 18-OCT-17 2FJI 1 REMARK REVDAT 3 24-FEB-09 2FJI 1 VERSN REVDAT 2 20-JUN-06 2FJI 1 JRNL REVDAT 1 16-MAY-06 2FJI 0 JRNL AUTH M.V.SIVARAM,M.L.FURGASON,D.N.BREWER,M.MUNSON JRNL TITL THE STRUCTURE OF THE EXOCYST SUBUNIT SEC6P DEFINES A JRNL TITL 2 CONSERVED ARCHITECTURE WITH DIVERSE ROLES. JRNL REF NAT.STRUCT.MOL.BIOL. V. 13 555 2006 JRNL REFN ISSN 1545-9993 JRNL PMID 16699513 JRNL DOI 10.1038/NSMB1096 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 76939 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.249 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3870 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.51 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 9040 REMARK 3 BIN R VALUE (WORKING SET) : 0.3990 REMARK 3 BIN FREE R VALUE : 0.4040 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 487 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.018 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6254 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 614 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.94000 REMARK 3 B22 (A**2) : -20.59000 REMARK 3 B33 (A**2) : 25.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 22.67000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM SIGMAA (A) : 0.52 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.42 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.56 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : CNS BULK SOLVENT MODEL USED REMARK 3 KSOL : 0.31 REMARK 3 BSOL : 62.94 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2FJI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JAN-06. REMARK 100 THE DEPOSITION ID IS D_1000035950. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-05; 15-SEP-04 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : NSLS; NSLS REMARK 200 BEAMLINE : X29A; X25 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793, 0.9792, 0.9679; 1.1 REMARK 200 MONOCHROMATOR : SI (111); SI(111) OR (220) REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; ADSC QUANTUM REMARK 200 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76939 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.42100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 77.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1%-4% PEG 6000, 10% GLYCEROL, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.65050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THIS DOMAIN IS A MONOMER. THERE ARE 2 DOMAINS IN THE REMARK 300 ASYMMETRIC UNIT (CHAINS A & B) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: 1 REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: 2 REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN 2 786 REMARK 465 GLY 2 787 REMARK 465 VAL 2 788 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS 1 413 CG CD CE NZ REMARK 470 LYS 1 420 CG CD CE NZ REMARK 470 LYS 1 439 CG CD CE NZ REMARK 470 HIS 1 453 CG ND1 CD2 CE1 NE2 REMARK 470 GLN 1 470 CG CD OE1 NE2 REMARK 470 TYR 1 520 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR 1 520 OH REMARK 470 LYS 1 523 CG CD CE NZ REMARK 470 TYR 1 524 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR 1 524 OH REMARK 470 THR 1 532 OG1 CG2 REMARK 470 GLU 1 536 CB CG CD OE1 OE2 REMARK 470 LYS 1 572 CG CD CE NZ REMARK 470 LYS 1 618 CG CD CE NZ REMARK 470 LEU 1 648 CG CD1 CD2 REMARK 470 LYS 1 737 CG CD CE NZ REMARK 470 GLU 1 803 CG CD OE1 OE2 REMARK 470 LYS 1 804 CG CD CE NZ REMARK 470 HIS 2 453 CG ND1 CD2 CE1 NE2 REMARK 470 LYS 2 504 CG CD CE NZ REMARK 470 LYS 2 516 CG CD CE NZ REMARK 470 TYR 2 520 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR 2 520 OH REMARK 470 LYS 2 523 CB CG CD CE NZ REMARK 470 TYR 2 524 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP 2 525 CB CG OD1 OD2 REMARK 470 ILE 2 526 CG1 CG2 CD1 REMARK 470 ASP 2 527 CB CG OD1 OD2 REMARK 470 SER 2 530 OG REMARK 470 THR 2 532 OG1 CG2 REMARK 470 GLU 2 534 CB CG CD OE1 OE2 REMARK 470 LYS 2 554 CG CD CE NZ REMARK 470 LYS 2 572 CG CD CE NZ REMARK 470 LYS 2 618 CG CD CE NZ REMARK 470 LEU 2 638 CG CD1 CD2 REMARK 470 LEU 2 648 CG CD1 CD2 REMARK 470 VAL 2 650 CG1 CG2 REMARK 470 LYS 2 680 CG CD CE NZ REMARK 470 LEU 2 682 CG CD1 CD2 REMARK 470 VAL 2 697 CG1 CG2 REMARK 470 GLU 2 704 CB CG CD OE1 OE2 REMARK 470 SER 2 705 OG REMARK 470 LYS 2 706 CG CD CE NZ REMARK 470 ILE 2 710 CG1 CG2 CD1 REMARK 470 ILE 2 734 CG1 CG2 CD1 REMARK 470 LYS 2 758 CB CG CD CE NZ REMARK 470 LYS 2 767 CG CD CE NZ REMARK 470 GLU 2 778 CG CD OE1 OE2 REMARK 470 ARG 2 780 CG CD NE CZ NH1 NH2 REMARK 470 ARG 2 781 CG CD NE CZ NH1 NH2 REMARK 470 ASN 2 782 CB CG OD1 ND2 REMARK 470 MET 2 783 CB CG SD CE REMARK 470 GLU 2 784 CG CD OE1 OE2 REMARK 470 ASP 2 789 CG OD1 OD2 REMARK 470 ARG 2 796 CG CD NE CZ NH1 NH2 REMARK 470 ARG 2 797 CG CD NE CZ NH1 NH2 REMARK 470 LYS 2 804 CB CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 TRP 1 433 CZ3 CH2 REMARK 480 LEU 1 437 CD1 REMARK 480 LEU 1 446 CD1 REMARK 480 THR 1 450 CG2 REMARK 480 LEU 1 460 CD2 REMARK 480 THR 1 467 CG2 REMARK 480 LYS 1 516 CE REMARK 480 ASP 1 525 O REMARK 480 ILE 1 526 CG2 REMARK 480 ASP 1 527 OD1 REMARK 480 GLU 1 529 C O REMARK 480 SER 1 530 N REMARK 480 ILE 1 531 CB REMARK 480 PRO 1 533 CG REMARK 480 ILE 1 546 CD1 REMARK 480 MET 1 553 CE REMARK 480 LEU 1 569 CD2 REMARK 480 VAL 1 570 CG2 REMARK 480 VAL 1 573 CG2 REMARK 480 THR 1 619 CG2 REMARK 480 ILE 1 728 CD1 REMARK 480 GLN 1 736 NE2 REMARK 480 LEU 1 739 CD1 CD2 REMARK 480 GLU 1 774 CB REMARK 480 GLU 1 778 CB CG REMARK 480 ARG 1 780 NH1 NH2 REMARK 480 VAL 1 788 CG1 REMARK 480 MET 1 795 CE REMARK 480 GLN 1 805 CG REMARK 480 LYS 2 420 NZ REMARK 480 TRP 2 433 CE3 CZ3 CH2 REMARK 480 ILE 2 434 CD1 REMARK 480 ALA 2 440 CB REMARK 480 VAL 2 444 CG2 REMARK 480 ASP 2 457 CB REMARK 480 LEU 2 460 CD1 REMARK 480 LEU 2 462 CD2 REMARK 480 THR 2 467 CG2 REMARK 480 MET 2 471 CG REMARK 480 THR 2 473 CG2 REMARK 480 VAL 2 489 CG2 REMARK 480 ILE 2 507 CD1 REMARK 480 GLU 2 512 OE2 REMARK 480 ILE 2 518 CD1 REMARK 480 LYS 2 523 O REMARK 480 GLU 2 529 O REMARK 480 SER 2 530 O REMARK 480 TYR 2 544 CD2 REMARK 480 ILE 2 546 CD1 REMARK 480 LEU 2 569 CD1 REMARK 480 VAL 2 573 CG2 REMARK 480 ASN 2 580 ND2 REMARK 480 LEU 2 598 CD2 REMARK 480 LEU 2 600 CD2 REMARK 480 THR 2 619 CG2 REMARK 480 GLU 2 635 OE2 REMARK 480 ILE 2 653 CD1 REMARK 480 VAL 2 656 CG1 REMARK 480 ILE 2 662 CD1 REMARK 480 LEU 2 668 CD2 REMARK 480 ILE 2 691 CD1 REMARK 480 LEU 2 695 CD1 REMARK 480 LEU 2 700 CD1 CD2 REMARK 480 LEU 2 709 CD2 REMARK 480 PHE 2 714 CE2 REMARK 480 THR 2 715 CG2 REMARK 480 LEU 2 723 CD1 CD2 REMARK 480 ILE 2 728 CG1 CD1 REMARK 480 VAL 2 751 CG2 REMARK 480 LEU 2 754 CD1 REMARK 480 ILE 2 768 CD1 REMARK 480 GLU 2 774 CB REMARK 480 ARG 2 790 CG CD REMARK 480 GLU 2 791 OE2 REMARK 480 PHE 2 798 CD2 CE2 CZ REMARK 480 VAL 2 799 CG2 REMARK 480 GLU 2 801 CD OE1 OE2 REMARK 480 GLN 2 805 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER 1 624 O HOH 1 806 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH 1 806 O HOH 1 851 2555 1.96 REMARK 500 O HOH 1 817 O HOH 1 848 2545 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS 1 453 -175.09 -68.98 REMARK 500 ASN 1 521 -63.18 -91.11 REMARK 500 ASP 1 527 -177.38 37.99 REMARK 500 PRO 1 528 -8.51 -30.74 REMARK 500 GLU 1 536 106.95 -45.51 REMARK 500 PRO 1 538 171.62 -57.32 REMARK 500 PHE 1 616 -0.39 73.07 REMARK 500 ASN 1 645 135.41 -38.16 REMARK 500 ALA 1 667 -8.42 -59.15 REMARK 500 TYR 1 742 66.90 -107.29 REMARK 500 ARG 2 448 68.20 -66.26 REMARK 500 ASP 2 455 -159.14 -90.04 REMARK 500 HIS 2 522 25.01 -72.71 REMARK 500 LYS 2 523 -61.12 -125.85 REMARK 500 ASP 2 527 107.68 91.40 REMARK 500 PRO 2 528 4.69 -48.01 REMARK 500 SER 2 530 54.65 -179.14 REMARK 500 PHE 2 616 11.31 83.49 REMARK 500 LEU 2 668 -8.31 -52.21 REMARK 500 LYS 2 677 104.71 -56.12 REMARK 500 LEU 2 700 39.13 -70.73 REMARK 500 GLU 2 704 -12.91 -48.23 REMARK 500 TYR 2 742 68.51 -109.30 REMARK 500 ARG 2 746 -169.09 -77.84 REMARK 500 ASP 2 759 36.91 -91.64 REMARK 500 GLU 2 784 34.64 -72.32 REMARK 500 LEU 2 800 86.72 -158.78 REMARK 500 GLU 2 801 109.22 -49.81 REMARK 500 LYS 2 804 137.85 -28.27 REMARK 500 REMARK 500 REMARK: NULL DBREF 2FJI 1 411 805 UNP P32844 SEC6_YEAST 411 805 DBREF 2FJI 2 411 805 UNP P32844 SEC6_YEAST 411 805 SEQADV 2FJI GLY 1 407 UNP P32844 CLONING ARTIFACT SEQADV 2FJI SER 1 408 UNP P32844 CLONING ARTIFACT SEQADV 2FJI HIS 1 409 UNP P32844 CLONING ARTIFACT SEQADV 2FJI MET 1 410 UNP P32844 CLONING ARTIFACT SEQADV 2FJI GLY 2 407 UNP P32844 CLONING ARTIFACT SEQADV 2FJI SER 2 408 UNP P32844 CLONING ARTIFACT SEQADV 2FJI HIS 2 409 UNP P32844 CLONING ARTIFACT SEQADV 2FJI MET 2 410 UNP P32844 CLONING ARTIFACT SEQRES 1 1 399 GLY SER HIS MET GLY ASP LYS GLU LYS GLU THR LEU PHE SEQRES 2 1 399 LYS ASP TYR LEU ASN LEU ILE VAL VAL LYS MET THR GLU SEQRES 3 1 399 TRP ILE GLY ASN LEU GLU LYS ALA GLU PHE ASP VAL PHE SEQRES 4 1 399 LEU GLU ARG SER THR PRO PRO HIS SER ASP SER ASP GLY SEQRES 5 1 399 LEU LEU PHE LEU ASP GLY THR LYS THR CYS PHE GLN MET SEQRES 6 1 399 PHE THR GLN GLN VAL GLU VAL ALA ALA GLY THR ASN GLN SEQRES 7 1 399 ALA LYS ILE LEU VAL GLY VAL VAL GLU ARG PHE SER ASP SEQRES 8 1 399 LEU LEU THR LYS ARG GLN LYS ASN TRP ILE SER LYS ILE SEQRES 9 1 399 SER GLU GLU ILE LYS LYS GLN ILE ASN TYR ASN HIS LYS SEQRES 10 1 399 TYR ASP ILE ASP PRO GLU SER ILE THR PRO GLU ASP GLU SEQRES 11 1 399 CYS PRO GLY GLY LEU VAL GLU TYR LEU ILE ALA VAL SER SEQRES 12 1 399 ASN ASP GLN MET LYS ALA ALA ASP TYR ALA VAL ALA ILE SEQRES 13 1 399 SER SER LYS TYR GLY LYS LEU VAL SER LYS VAL TYR GLU SEQRES 14 1 399 LYS GLN ILE THR ASN HIS LEU GLU GLY THR LEU ASP GLY SEQRES 15 1 399 PHE ALA GLU VAL ALA GLN CYS SER SER LEU GLY LEU ILE SEQRES 16 1 399 THR LEU MET PHE ASP ASP LEU ARG LYS PRO TYR GLN GLU SEQRES 17 1 399 ILE PHE SER LYS THR TRP TYR MET GLY SER GLN ALA GLN SEQRES 18 1 399 GLN ILE ALA ASP THR LEU ASP GLU TYR LEU LEU ASP ILE SEQRES 19 1 399 LYS PRO GLN MET ASN SER VAL LEU PHE VAL ASN PHE ILE SEQRES 20 1 399 ASP ASN VAL ILE GLY GLU THR ILE ILE LYS PHE LEU THR SEQRES 21 1 399 ALA LEU SER PHE GLU HIS SER PHE LYS ASN LYS ASN ASN SEQRES 22 1 399 LYS PHE LEU GLU ALA MET LYS ARG ASP PHE GLU ILE PHE SEQRES 23 1 399 TYR GLN LEU PHE VAL LYS VAL LEU ASP GLY ASN GLU SER SEQRES 24 1 399 LYS ASP THR LEU ILE THR GLN ASN PHE THR VAL MET GLU SEQRES 25 1 399 PHE PHE MET ASP LEU SER CYS GLU PRO ILE ASP SER ILE SEQRES 26 1 399 LEU ASP ILE TRP GLN LYS TYR LEU GLU VAL TYR TRP ASP SEQRES 27 1 399 SER ARG ILE ASP LEU LEU VAL GLY ILE LEU LYS CYS ARG SEQRES 28 1 399 LYS ASP VAL SER SER SER GLU ARG LYS LYS ILE VAL GLN SEQRES 29 1 399 GLN ALA THR GLU MET LEU HIS GLU TYR ARG ARG ASN MET SEQRES 30 1 399 GLU ALA ASN GLY VAL ASP ARG GLU PRO THR LEU MET ARG SEQRES 31 1 399 ARG PHE VAL LEU GLU PHE GLU LYS GLN SEQRES 1 2 399 GLY SER HIS MET GLY ASP LYS GLU LYS GLU THR LEU PHE SEQRES 2 2 399 LYS ASP TYR LEU ASN LEU ILE VAL VAL LYS MET THR GLU SEQRES 3 2 399 TRP ILE GLY ASN LEU GLU LYS ALA GLU PHE ASP VAL PHE SEQRES 4 2 399 LEU GLU ARG SER THR PRO PRO HIS SER ASP SER ASP GLY SEQRES 5 2 399 LEU LEU PHE LEU ASP GLY THR LYS THR CYS PHE GLN MET SEQRES 6 2 399 PHE THR GLN GLN VAL GLU VAL ALA ALA GLY THR ASN GLN SEQRES 7 2 399 ALA LYS ILE LEU VAL GLY VAL VAL GLU ARG PHE SER ASP SEQRES 8 2 399 LEU LEU THR LYS ARG GLN LYS ASN TRP ILE SER LYS ILE SEQRES 9 2 399 SER GLU GLU ILE LYS LYS GLN ILE ASN TYR ASN HIS LYS SEQRES 10 2 399 TYR ASP ILE ASP PRO GLU SER ILE THR PRO GLU ASP GLU SEQRES 11 2 399 CYS PRO GLY GLY LEU VAL GLU TYR LEU ILE ALA VAL SER SEQRES 12 2 399 ASN ASP GLN MET LYS ALA ALA ASP TYR ALA VAL ALA ILE SEQRES 13 2 399 SER SER LYS TYR GLY LYS LEU VAL SER LYS VAL TYR GLU SEQRES 14 2 399 LYS GLN ILE THR ASN HIS LEU GLU GLY THR LEU ASP GLY SEQRES 15 2 399 PHE ALA GLU VAL ALA GLN CYS SER SER LEU GLY LEU ILE SEQRES 16 2 399 THR LEU MET PHE ASP ASP LEU ARG LYS PRO TYR GLN GLU SEQRES 17 2 399 ILE PHE SER LYS THR TRP TYR MET GLY SER GLN ALA GLN SEQRES 18 2 399 GLN ILE ALA ASP THR LEU ASP GLU TYR LEU LEU ASP ILE SEQRES 19 2 399 LYS PRO GLN MET ASN SER VAL LEU PHE VAL ASN PHE ILE SEQRES 20 2 399 ASP ASN VAL ILE GLY GLU THR ILE ILE LYS PHE LEU THR SEQRES 21 2 399 ALA LEU SER PHE GLU HIS SER PHE LYS ASN LYS ASN ASN SEQRES 22 2 399 LYS PHE LEU GLU ALA MET LYS ARG ASP PHE GLU ILE PHE SEQRES 23 2 399 TYR GLN LEU PHE VAL LYS VAL LEU ASP GLY ASN GLU SER SEQRES 24 2 399 LYS ASP THR LEU ILE THR GLN ASN PHE THR VAL MET GLU SEQRES 25 2 399 PHE PHE MET ASP LEU SER CYS GLU PRO ILE ASP SER ILE SEQRES 26 2 399 LEU ASP ILE TRP GLN LYS TYR LEU GLU VAL TYR TRP ASP SEQRES 27 2 399 SER ARG ILE ASP LEU LEU VAL GLY ILE LEU LYS CYS ARG SEQRES 28 2 399 LYS ASP VAL SER SER SER GLU ARG LYS LYS ILE VAL GLN SEQRES 29 2 399 GLN ALA THR GLU MET LEU HIS GLU TYR ARG ARG ASN MET SEQRES 30 2 399 GLU ALA ASN GLY VAL ASP ARG GLU PRO THR LEU MET ARG SEQRES 31 2 399 ARG PHE VAL LEU GLU PHE GLU LYS GLN FORMUL 3 HOH *614(H2 O) HELIX 1 1 GLY 1 411 ARG 1 448 1 38 HELIX 2 2 LEU 1 462 THR 1 482 1 21 HELIX 3 3 GLN 1 484 LYS 1 523 1 40 HELIX 4 4 ILE 1 526 SER 1 530 5 5 HELIX 5 5 GLY 1 540 LYS 1 568 1 29 HELIX 6 6 SER 1 571 GLY 1 584 1 14 HELIX 7 7 THR 1 585 ASP 1 607 1 23 HELIX 8 8 LEU 1 608 GLN 1 613 1 6 HELIX 9 9 SER 1 617 TYR 1 621 5 5 HELIX 10 10 SER 1 624 LYS 1 641 1 18 HELIX 11 11 PRO 1 642 MET 1 644 5 3 HELIX 12 12 ASN 1 645 ALA 1 667 1 23 HELIX 13 13 LEU 1 668 GLU 1 671 5 4 HELIX 14 14 ASN 1 676 ASN 1 678 5 3 HELIX 15 15 ASN 1 679 LEU 1 700 1 22 HELIX 16 16 SER 1 705 GLU 1 726 1 22 HELIX 17 17 PRO 1 727 ASP 1 729 5 3 HELIX 18 18 SER 1 730 GLU 1 740 1 11 HELIX 19 19 ILE 1 747 LYS 1 755 1 9 HELIX 20 20 SER 1 761 ASN 1 786 1 26 HELIX 21 21 THR 1 793 PHE 1 798 5 6 HELIX 22 22 GLY 2 411 GLU 2 447 1 37 HELIX 23 23 LEU 2 462 THR 2 482 1 21 HELIX 24 24 GLN 2 484 ASP 2 525 1 42 HELIX 25 25 GLY 2 540 LYS 2 568 1 29 HELIX 26 26 SER 2 571 GLU 2 583 1 13 HELIX 27 27 THR 2 585 PHE 2 605 1 21 HELIX 28 28 LEU 2 608 GLU 2 614 1 7 HELIX 29 29 SER 2 617 MET 2 622 5 6 HELIX 30 30 SER 2 624 LYS 2 641 1 18 HELIX 31 31 ASN 2 645 THR 2 666 1 22 HELIX 32 32 ALA 2 667 GLU 2 671 5 5 HELIX 33 33 PHE 2 681 LEU 2 700 1 20 HELIX 34 34 SER 2 705 GLU 2 726 1 22 HELIX 35 35 SER 2 730 TYR 2 742 1 13 HELIX 36 36 ILE 2 747 CYS 2 756 1 10 HELIX 37 37 SER 2 761 ARG 2 781 1 21 HELIX 38 38 THR 2 793 PHE 2 798 5 6 SHEET 1 A 2 HIS 1 453 SER 1 454 0 SHEET 2 A 2 LEU 1 460 PHE 1 461 -1 O PHE 1 461 N HIS 1 453 SHEET 1 B 2 HIS 2 453 SER 2 454 0 SHEET 2 B 2 LEU 2 460 PHE 2 461 -1 O PHE 2 461 N HIS 2 453 CRYST1 108.295 63.301 151.468 90.00 103.89 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009234 0.000000 0.002283 0.00000 SCALE2 0.000000 0.015798 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006801 0.00000