HEADER METAL BINDING PROTEIN, ONCOPROTEIN 04-JAN-06 2FK4 TITLE SOLUTION STRUCTURE OF THE C-TERMINAL ZINC BINDING DOMAIN OF THE HPV16 TITLE 2 E6 ONCOPROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN E6; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN PAPILLOMAVIRUS TYPE 16; SOURCE 3 ORGANISM_TAXID: 333760; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 DE2; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS ZINC BINDING DOMAIN, ONCOPROTEIN, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR Y.NOMINE,S.CHARBONNIER REVDAT 4 20-OCT-21 2FK4 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 2FK4 1 VERSN REVDAT 2 25-APR-06 2FK4 1 JRNL REVDAT 1 24-JAN-06 2FK4 0 JRNL AUTH Y.NOMINE,M.MASSON,S.CHARBONNIER,K.ZANIER,T.RISTRIANI, JRNL AUTH 2 F.DERYCKERE,A.P.SIBLER,D.DESPLANCQ,R.A.ATKINSON,E.WEISS, JRNL AUTH 3 G.ORFANOUDAKIS,B.KIEFFER,G.TRAVE JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF E6 ONCOPROTEIN: JRNL TITL 2 INSIGHTS IN THE MOLECULAR PATHWAYS OF HUMAN JRNL TITL 3 PAPILLOMAVIRUS-MEDIATED PATHOGENESIS JRNL REF MOL.CELL V. 21 665 2006 JRNL REFN ISSN 1097-2765 JRNL PMID 16507364 JRNL DOI 10.1016/J.MOLCEL.2006.01.024 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.CHARBONNIER,L.MIGUET,N.POTIER,A.VAN DORSSELAER, REMARK 1 AUTH 2 R.A.ATKINSON,B.KIEFFER REMARK 1 TITL 1H AND 15N RESONANCE ASSIGNMENT, SECONDARY STRUCTURE AND REMARK 1 TITL 2 DYNAMIC BEHAVIOUR OF THE C-TERMINAL DOMAIN OF HUMAN REMARK 1 TITL 3 PAPILLOMAVIRUS ONCOPROTEIN E6. REMARK 1 REF J.BIOMOL.NMR V. 31 129 2005 REMARK 1 REFN ISSN 0925-2738 REMARK 1 PMID 15772752 REMARK 1 DOI 10.1007/S10858-004-7802-Y REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH, X-PLOR NIH REMARK 3 AUTHORS : BRUNGER (X-PLOR), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NOE DISTANCE RESTRAINTS WERE SPLIT IN REMARK 3 TWO SETS. ONE SET INVOLVED RESIDUES THAT WERE IDENTIFIED AS REMARK 3 BEEING AFFECTED BY CONFORMATIONAL EXCHANGE BY RELAXATION REMARK 3 DISPERSION EXPERIMENTS. THESE DISTANCES WERE ASSIGNED AN REMARK 3 ADDITIONAL 1A TO THE UPPER DISTANCE LIMIT. REPORTED CLOSE REMARK 3 CONTACTS ARE DUE TO CONFORMATIONAL HETEROGENEITIES IN THE SET OF REMARK 3 NOES. THE DYNAMICAL PROPERTIES OF THIS PROTEIN HAVE BEEN REMARK 3 DESCRIBED IN DEPTH IN THE J. BIOMOL. NMR REFERENCE CITED ABOVE. REMARK 4 REMARK 4 2FK4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JAN-06. REMARK 100 THE DEPOSITION ID IS D_1000035972. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288; 288 REMARK 210 PH : 6.8; 6.8 REMARK 210 IONIC STRENGTH : 50 MM; 50 MM REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0 MM E6C U-15N; 20 MM TRIS REMARK 210 -HCL, 50 MM NACL, 1MM DTT; 1.0 REMARK 210 MM E6C, 20 MM TRIS-HCL, 50 MM REMARK 210 NACL, 1MM DTT REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XEASY 1.0, XWINNMR 2.6 REMARK 210 METHOD USED : SIMULATED ANNEALING, PROTOCOL REMARK 210 REFINE.INP REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR AND 3D 15N HETERONUCLEAR TECHNIQUES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 THR A 68 REMARK 465 ARG A 69 REMARK 465 ARG A 70 REMARK 465 GLU A 71 REMARK 465 THR A 72 REMARK 465 GLN A 73 REMARK 465 LEU A 74 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 27 HH21 ARG A 54 1.37 REMARK 500 O CYS A 26 HE21 GLN A 30 1.49 REMARK 500 N ASN A 28 HE22 GLN A 30 1.60 REMARK 500 O ASN A 28 OE1 GLN A 30 2.16 REMARK 500 O ILE A 51 O ARG A 54 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 28 -43.18 -130.44 REMARK 500 1 LYS A 44 71.33 173.86 REMARK 500 2 TYR A 7 17.27 -146.73 REMARK 500 2 ASN A 28 -62.10 -109.14 REMARK 500 2 LYS A 44 67.81 124.09 REMARK 500 3 LYS A 44 68.05 156.31 REMARK 500 4 ASN A 28 -40.02 -138.97 REMARK 500 4 CYS A 29 56.87 -100.54 REMARK 500 4 GLN A 30 -9.04 -32.07 REMARK 500 4 PRO A 32 150.14 -49.74 REMARK 500 4 LYS A 44 71.93 139.18 REMARK 500 4 ARG A 52 104.75 -52.42 REMARK 500 5 LEU A 23 89.11 128.09 REMARK 500 5 GLN A 30 -114.06 65.04 REMARK 500 5 PRO A 32 79.74 -56.72 REMARK 500 5 LYS A 44 66.54 131.47 REMARK 500 6 THR A 10 -38.08 -166.88 REMARK 500 6 LEU A 23 97.99 -63.91 REMARK 500 6 ARG A 25 168.00 178.61 REMARK 500 6 ASN A 28 -47.00 -135.70 REMARK 500 6 LYS A 44 79.08 113.40 REMARK 500 7 LEU A 23 103.76 122.77 REMARK 500 7 CYS A 29 60.13 -158.83 REMARK 500 7 GLN A 30 -9.36 -32.73 REMARK 500 7 LYS A 44 66.50 129.33 REMARK 500 8 THR A 10 -25.72 -38.47 REMARK 500 8 LEU A 23 87.46 129.81 REMARK 500 8 ASN A 28 -62.07 -108.67 REMARK 500 8 LYS A 44 77.58 -172.26 REMARK 500 8 ARG A 47 145.25 -172.70 REMARK 500 9 ASN A 28 -64.84 -98.34 REMARK 500 9 LYS A 44 84.34 -171.87 REMARK 500 10 LEU A 23 75.66 154.70 REMARK 500 10 LYS A 44 72.77 110.45 REMARK 500 10 ARG A 52 104.93 -52.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 26 SG REMARK 620 2 CYS A 29 SG 108.6 REMARK 620 3 CYS A 59 SG 106.4 110.8 REMARK 620 4 CYS A 62 SG 112.0 110.1 108.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 101 DBREF 2FK4 A 3 74 UNP P03126 VE6_HPV16 87 158 SEQADV 2FK4 GLY A 0 UNP P03126 CLONING ARTIFACT SEQADV 2FK4 ALA A 1 UNP P03126 CLONING ARTIFACT SEQADV 2FK4 MET A 2 UNP P03126 CLONING ARTIFACT SEQADV 2FK4 SER A 3 UNP P03126 CYS 87 ENGINEERED MUTATION SEQADV 2FK4 SER A 20 UNP P03126 CYS 104 ENGINEERED MUTATION SEQADV 2FK4 SER A 34 UNP P03126 CYS 118 ENGINEERED MUTATION SEQADV 2FK4 SER A 63 UNP P03126 CYS 147 ENGINEERED MUTATION SEQRES 1 A 75 GLY ALA MET SER TYR SER LEU TYR GLY THR THR LEU GLU SEQRES 2 A 75 GLN GLN TYR ASN LYS PRO LEU SER ASP LEU LEU ILE ARG SEQRES 3 A 75 CYS ILE ASN CYS GLN LYS PRO LEU SER PRO GLU GLU LYS SEQRES 4 A 75 GLN ARG HIS LEU ASP LYS LYS GLN ARG PHE HIS ASN ILE SEQRES 5 A 75 ARG GLY ARG TRP THR GLY ARG CYS MET SER CYS SER ARG SEQRES 6 A 75 SER SER ARG THR ARG ARG GLU THR GLN LEU HET ZN A 101 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 GLY A 8 LYS A 17 1 10 HELIX 2 2 SER A 34 LYS A 45 1 12 HELIX 3 3 GLY A 57 SER A 63 1 7 SHEET 1 A 3 TYR A 4 LEU A 6 0 SHEET 2 A 3 PHE A 48 ILE A 51 -1 O ASN A 50 N TYR A 4 SHEET 3 A 3 ARG A 54 THR A 56 -1 O THR A 56 N HIS A 49 LINK SG CYS A 26 ZN ZN A 101 1555 1555 2.30 LINK SG CYS A 29 ZN ZN A 101 1555 1555 2.29 LINK SG CYS A 59 ZN ZN A 101 1555 1555 2.29 LINK SG CYS A 62 ZN ZN A 101 1555 1555 2.30 SITE 1 AC1 5 CYS A 26 ASN A 28 CYS A 29 CYS A 59 SITE 2 AC1 5 CYS A 62 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1