HEADER REPLICATION/DNA 06-JAN-06 2FLL TITLE TERNARY COMPLEX OF HUMAN DNA POLYMERASE IOTA WITH DNA AND DTTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA PRIMER STRAND; COMPND 3 CHAIN: P; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA TEMPLATE STRAND; COMPND 7 CHAIN: T; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA POLYMERASE IOTA; COMPND 11 CHAIN: A; COMPND 12 SYNONYM: RAD30 HOMOLOG B, ETA2; COMPND 13 EC: 2.7.7.7; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 GENE: POLI, RAD30B; SOURCE 10 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 11 EXPRESSION_SYSTEM_COMMON: BAKER'S YEAST; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 13 EXPRESSION_SYSTEM_STRAIN: BJ5464; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PBJ941 KEYWDS DNA POLYMERASE, LESION BYPASS, Y-FAMILY, TERNARY COMPLEX, P6522, KEYWDS 2 REPLICATION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.T.NAIR,R.E.JOHNSON,L.PRAKASH,S.PRAKASH,A.K.AGGARWAL REVDAT 4 30-AUG-23 2FLL 1 REMARK LINK REVDAT 3 13-JUL-11 2FLL 1 VERSN REVDAT 2 24-FEB-09 2FLL 1 VERSN REVDAT 1 12-DEC-06 2FLL 0 JRNL AUTH D.T.NAIR,R.E.JOHNSON,L.PRAKASH,S.PRAKASH,A.K.AGGARWAL JRNL TITL AN INCOMING NUCLEOTIDE IMPOSES AN ANTI TO SYN CONFORMATIONAL JRNL TITL 2 CHANGE ON THE TEMPLATING PURINE IN THE HUMAN DNA JRNL TITL 3 POLYMERASE-IOTA ACTIVE SITE. JRNL REF STRUCTURE V. 14 749 2006 JRNL REFN ISSN 0969-2126 JRNL PMID 16615915 JRNL DOI 10.1016/J.STR.2006.01.010 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 16057 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1376 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1073 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 75 REMARK 3 BIN FREE R VALUE : 0.3350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2866 REMARK 3 NUCLEIC ACID ATOMS : 321 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 91 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.63000 REMARK 3 B22 (A**2) : 0.63000 REMARK 3 B33 (A**2) : -0.94000 REMARK 3 B12 (A**2) : 0.31000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.661 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.344 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.232 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.680 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.922 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.883 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3295 ; 0.043 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2889 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4522 ; 2.929 ; 2.112 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6769 ; 1.522 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 370 ; 6.705 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 517 ; 0.177 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3369 ; 0.016 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 529 ; 0.014 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 719 ; 0.264 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3440 ; 0.277 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1938 ; 0.105 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 103 ; 0.196 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 4 ; 0.616 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 23 ; 0.440 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.436 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1860 ; 1.951 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2998 ; 3.288 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1435 ; 3.822 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1524 ; 5.620 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 26 A 37 REMARK 3 RESIDUE RANGE : A 99 A 224 REMARK 3 ORIGIN FOR THE GROUP (A): 16.7455 16.7106 6.0272 REMARK 3 T TENSOR REMARK 3 T11: 0.3762 T22: 0.3406 REMARK 3 T33: 0.3008 T12: 0.0020 REMARK 3 T13: -0.0176 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.2213 L22: 0.4817 REMARK 3 L33: 1.8633 L12: -0.0496 REMARK 3 L13: 0.2374 L23: 0.0083 REMARK 3 S TENSOR REMARK 3 S11: 0.0293 S12: 0.0060 S13: 0.0146 REMARK 3 S21: -0.0419 S22: -0.1272 S23: 0.0376 REMARK 3 S31: 0.0411 S32: 0.2142 S33: 0.0979 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 38 A 98 REMARK 3 ORIGIN FOR THE GROUP (A): -4.4044 15.6492 23.5582 REMARK 3 T TENSOR REMARK 3 T11: 0.2998 T22: 0.2671 REMARK 3 T33: 0.4249 T12: -0.1277 REMARK 3 T13: 0.0644 T23: -0.1040 REMARK 3 L TENSOR REMARK 3 L11: 2.2683 L22: 1.7313 REMARK 3 L33: 4.0924 L12: -1.9023 REMARK 3 L13: -0.4525 L23: -0.6094 REMARK 3 S TENSOR REMARK 3 S11: -0.0536 S12: 0.0053 S13: -0.3341 REMARK 3 S21: 0.2017 S22: -0.1276 S23: 0.5020 REMARK 3 S31: 0.3059 S32: -0.1050 S33: 0.1813 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 225 A 287 REMARK 3 ORIGIN FOR THE GROUP (A): 0.8995 35.7830 -2.8189 REMARK 3 T TENSOR REMARK 3 T11: 0.3662 T22: 0.2071 REMARK 3 T33: 0.4028 T12: -0.0138 REMARK 3 T13: -0.1159 T23: 0.0178 REMARK 3 L TENSOR REMARK 3 L11: 2.2468 L22: 2.6253 REMARK 3 L33: 2.9402 L12: -0.7824 REMARK 3 L13: 1.6880 L23: 1.3329 REMARK 3 S TENSOR REMARK 3 S11: -0.2754 S12: 0.1562 S13: 0.4563 REMARK 3 S21: -0.0455 S22: -0.1296 S23: 0.0135 REMARK 3 S31: -0.1402 S32: -0.0584 S33: 0.4050 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 298 A 414 REMARK 3 ORIGIN FOR THE GROUP (A): 7.4500 41.1194 33.0710 REMARK 3 T TENSOR REMARK 3 T11: 0.4185 T22: 0.2064 REMARK 3 T33: 0.2438 T12: -0.1439 REMARK 3 T13: 0.1127 T23: -0.2197 REMARK 3 L TENSOR REMARK 3 L11: 3.8226 L22: 5.1539 REMARK 3 L33: 3.0538 L12: 1.5696 REMARK 3 L13: 0.2424 L23: -0.0204 REMARK 3 S TENSOR REMARK 3 S11: 0.4363 S12: -0.0215 S13: 0.2199 REMARK 3 S21: 0.9655 S22: -0.3209 S23: 0.2638 REMARK 3 S31: -0.0649 S32: 0.0210 S33: -0.1154 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : T 839 T 847 REMARK 3 RESIDUE RANGE : P 867 P 873 REMARK 3 RESIDUE RANGE : A 875 A 875 REMARK 3 RESIDUE RANGE : A 871 A 872 REMARK 3 ORIGIN FOR THE GROUP (A): 4.9228 37.1365 17.3438 REMARK 3 T TENSOR REMARK 3 T11: 0.3816 T22: 0.2820 REMARK 3 T33: 0.4513 T12: -0.0996 REMARK 3 T13: -0.0073 T23: -0.0996 REMARK 3 L TENSOR REMARK 3 L11: 0.6825 L22: 1.1662 REMARK 3 L33: 0.9255 L12: 0.8340 REMARK 3 L13: -0.0988 L23: -0.7907 REMARK 3 S TENSOR REMARK 3 S11: 0.0524 S12: -0.0356 S13: 0.2657 REMARK 3 S21: -0.0104 S22: -0.1475 S23: 0.5200 REMARK 3 S31: -0.1034 S32: 0.3238 S33: 0.0951 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2FLL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-FEB-06. REMARK 100 THE DEPOSITION ID IS D_1000036024. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18496 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 34.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB CODE 2AZL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.5, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 134.79067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.39533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 101.09300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 33.69767 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 168.48833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 134.79067 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 67.39533 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 33.69767 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 101.09300 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 168.48833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: P, T, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 49.16450 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 85.15541 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 33.69767 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DT T 837 REMARK 465 DC T 838 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 LEU A 3 REMARK 465 ALA A 4 REMARK 465 ASP A 5 REMARK 465 VAL A 6 REMARK 465 GLY A 7 REMARK 465 ALA A 8 REMARK 465 ALA A 9 REMARK 465 ALA A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLN A 13 REMARK 465 GLY A 14 REMARK 465 VAL A 15 REMARK 465 HIS A 16 REMARK 465 ASP A 17 REMARK 465 GLN A 18 REMARK 465 VAL A 19 REMARK 465 LEU A 20 REMARK 465 PRO A 21 REMARK 465 THR A 22 REMARK 465 PRO A 23 REMARK 465 ASN A 24 REMARK 465 LYS A 371 REMARK 465 LEU A 372 REMARK 465 GLY A 373 REMARK 465 THR A 374 REMARK 465 GLY A 375 REMARK 465 ASN A 376 REMARK 465 TYR A 377 REMARK 465 ASP A 378 REMARK 465 VAL A 395 REMARK 465 ASN A 396 REMARK 465 VAL A 397 REMARK 465 LYS A 398 REMARK 465 MET A 399 REMARK 465 PRO A 400 REMARK 465 PHE A 401 REMARK 465 HIS A 402 REMARK 465 LEU A 403 REMARK 465 ALA A 415 REMARK 465 LEU A 416 REMARK 465 ASN A 417 REMARK 465 THR A 418 REMARK 465 ALA A 419 REMARK 465 LYS A 420 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DT T 839 P OP1 OP2 REMARK 470 TYR A 61 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 82 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 146 CG OD1 OD2 REMARK 470 LYS A 245 CG CD CE NZ REMARK 470 LYS A 271 CG CD CE NZ REMARK 470 LYS A 310 CG CD CE NZ REMARK 470 VAL A 315 CG1 CG2 REMARK 470 GLU A 316 CG CD OE1 OE2 REMARK 470 LYS A 338 CG CD CE NZ REMARK 470 TYR A 349 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 352 CG CD OE1 OE2 REMARK 470 LYS A 353 CG CD CE NZ REMARK 470 HIS A 354 CG ND1 CD2 CE1 NE2 REMARK 470 TYR A 355 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 VAL A 379 CG1 CG2 REMARK 470 ASP A 385 CG OD1 OD2 REMARK 470 LYS A 389 CG CD CE NZ REMARK 470 LEU A 405 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O5' DA P 867 O3' DT T 847 10665 1.65 REMARK 500 C5' DA P 867 O3' DT T 847 10665 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA P 867 O4' DA P 867 C4' 0.068 REMARK 500 DA P 867 C5 DA P 867 N7 -0.056 REMARK 500 DG P 868 N3 DG P 868 C4 0.065 REMARK 500 DG P 869 C5 DG P 869 N7 0.096 REMARK 500 DA P 870 C2' DA P 870 C1' 0.097 REMARK 500 DA P 870 O4' DA P 870 C4' 0.062 REMARK 500 DC P 871 C3' DC P 871 C2' -0.065 REMARK 500 DC P 871 O4' DC P 871 C1' -0.090 REMARK 500 DC P 871 O3' DC P 871 C3' -0.097 REMARK 500 DC P 871 O3' DC P 872 P 0.092 REMARK 500 DC P 872 P DC P 872 O5' 0.085 REMARK 500 DC P 872 C3' DC P 872 C2' -0.071 REMARK 500 DC P 872 O4' DC P 872 C1' -0.130 REMARK 500 DC P 872 O3' DC P 872 C3' -0.096 REMARK 500 DC P 872 C2 DC P 872 N3 -0.049 REMARK 500 DC P 872 N3 DC P 872 C4 0.078 REMARK 500 DT T 839 O5' DT T 839 C5' 0.125 REMARK 500 DT T 839 C5' DT T 839 C4' 0.062 REMARK 500 DT T 839 C4' DT T 839 C3' 0.061 REMARK 500 DT T 839 O3' DT T 839 C3' 0.090 REMARK 500 DT T 839 C6 DT T 839 N1 0.096 REMARK 500 DT T 839 O3' DA T 840 P 0.104 REMARK 500 DA T 840 P DA T 840 O5' 0.063 REMARK 500 DA T 840 C6 DA T 840 N1 0.074 REMARK 500 DA T 840 C5 DA T 840 N7 -0.093 REMARK 500 DA T 840 C8 DA T 840 N9 -0.060 REMARK 500 DG T 841 C5' DG T 841 C4' -0.073 REMARK 500 DG T 841 C4 DG T 841 C5 -0.052 REMARK 500 DG T 842 O4' DG T 842 C4' 0.059 REMARK 500 DG T 842 O3' DG T 842 C3' -0.046 REMARK 500 DG T 843 C2' DG T 843 C1' 0.067 REMARK 500 DG T 843 O4' DG T 843 C1' -0.181 REMARK 500 DG T 843 O4' DG T 843 C4' 0.071 REMARK 500 DT T 844 O3' DT T 844 C3' -0.061 REMARK 500 DT T 844 N3 DT T 844 C4 -0.080 REMARK 500 DT T 844 C5 DT T 844 C7 0.103 REMARK 500 DT T 844 O3' DC T 845 P 0.085 REMARK 500 DC T 845 O4' DC T 845 C1' -0.101 REMARK 500 DC T 846 C2' DC T 846 C1' 0.086 REMARK 500 DC T 846 O3' DC T 846 C3' -0.043 REMARK 500 DC T 846 N3 DC T 846 C4 0.051 REMARK 500 DC T 846 C5 DC T 846 C6 0.053 REMARK 500 DT T 847 O4' DT T 847 C1' -0.106 REMARK 500 DT T 847 C5 DT T 847 C7 0.081 REMARK 500 ALA A 25 CA ALA A 25 CB 0.151 REMARK 500 SER A 27 C SER A 27 O -0.114 REMARK 500 TYR A 39 CB TYR A 39 CG 0.117 REMARK 500 TYR A 39 CE2 TYR A 39 CD2 -0.108 REMARK 500 VAL A 64 CB VAL A 64 CG1 0.145 REMARK 500 CYS A 66 CA CYS A 66 CB -0.081 REMARK 500 REMARK 500 THIS ENTRY HAS 84 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA P 867 O5' - C5' - C4' ANGL. DEV. = 20.2 DEGREES REMARK 500 DA P 867 O4' - C4' - C3' ANGL. DEV. = -7.7 DEGREES REMARK 500 DA P 867 C1' - O4' - C4' ANGL. DEV. = 8.5 DEGREES REMARK 500 DA P 867 O4' - C1' - C2' ANGL. DEV. = -5.2 DEGREES REMARK 500 DA P 867 O4' - C1' - N9 ANGL. DEV. = 7.9 DEGREES REMARK 500 DA P 867 C6 - N1 - C2 ANGL. DEV. = -4.7 DEGREES REMARK 500 DA P 867 C8 - N9 - C4 ANGL. DEV. = -3.7 DEGREES REMARK 500 DA P 867 N1 - C6 - N6 ANGL. DEV. = -4.6 DEGREES REMARK 500 DA P 867 C3' - O3' - P ANGL. DEV. = 8.4 DEGREES REMARK 500 DG P 868 C3' - C2' - C1' ANGL. DEV. = -4.9 DEGREES REMARK 500 DG P 868 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 DG P 869 C8 - N9 - C4 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG P 869 C3' - O3' - P ANGL. DEV. = -10.5 DEGREES REMARK 500 DA P 870 O4' - C4' - C3' ANGL. DEV. = 6.6 DEGREES REMARK 500 DA P 870 O4' - C1' - C2' ANGL. DEV. = 3.9 DEGREES REMARK 500 DA P 870 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DA P 870 N1 - C2 - N3 ANGL. DEV. = 4.2 DEGREES REMARK 500 DA P 870 C2 - N3 - C4 ANGL. DEV. = -3.7 DEGREES REMARK 500 DA P 870 C5 - N7 - C8 ANGL. DEV. = -3.7 DEGREES REMARK 500 DA P 870 N1 - C6 - N6 ANGL. DEV. = 4.3 DEGREES REMARK 500 DA P 870 C5 - C6 - N6 ANGL. DEV. = -4.9 DEGREES REMARK 500 DC P 871 O3' - P - OP2 ANGL. DEV. = 8.0 DEGREES REMARK 500 DC P 871 O4' - C4' - C3' ANGL. DEV. = 4.2 DEGREES REMARK 500 DC P 871 C4' - C3' - O3' ANGL. DEV. = 12.5 DEGREES REMARK 500 DC P 871 C2 - N3 - C4 ANGL. DEV. = 3.8 DEGREES REMARK 500 DC P 871 N3 - C4 - C5 ANGL. DEV. = -3.4 DEGREES REMARK 500 DC P 872 O4' - C4' - C3' ANGL. DEV. = 4.6 DEGREES REMARK 500 DC P 872 C4' - C3' - O3' ANGL. DEV. = 14.3 DEGREES REMARK 500 DT T 839 O4' - C1' - C2' ANGL. DEV. = 4.0 DEGREES REMARK 500 DT T 839 O4' - C1' - N1 ANGL. DEV. = 5.8 DEGREES REMARK 500 DT T 839 N3 - C4 - C5 ANGL. DEV. = 4.0 DEGREES REMARK 500 DT T 839 C5 - C4 - O4 ANGL. DEV. = -4.3 DEGREES REMARK 500 DT T 839 C3' - O3' - P ANGL. DEV. = 12.0 DEGREES REMARK 500 DA T 840 O3' - P - OP2 ANGL. DEV. = 7.8 DEGREES REMARK 500 DA T 840 O3' - P - OP1 ANGL. DEV. = 9.9 DEGREES REMARK 500 DA T 840 OP1 - P - OP2 ANGL. DEV. = -16.2 DEGREES REMARK 500 DA T 840 N7 - C8 - N9 ANGL. DEV. = 4.9 DEGREES REMARK 500 DA T 840 C8 - N9 - C4 ANGL. DEV. = -5.4 DEGREES REMARK 500 DA T 840 N9 - C4 - C5 ANGL. DEV. = 2.8 DEGREES REMARK 500 DG T 842 O4' - C4' - C3' ANGL. DEV. = 4.5 DEGREES REMARK 500 DG T 842 C4' - C3' - C2' ANGL. DEV. = -6.0 DEGREES REMARK 500 DG T 842 C3' - C2' - C1' ANGL. DEV. = 12.7 DEGREES REMARK 500 DG T 842 O4' - C1' - C2' ANGL. DEV. = -7.0 DEGREES REMARK 500 DG T 843 O4' - C4' - C3' ANGL. DEV. = 3.8 DEGREES REMARK 500 DG T 843 C4' - C3' - C2' ANGL. DEV. = -8.7 DEGREES REMARK 500 DG T 843 O4' - C1' - C2' ANGL. DEV. = -6.2 DEGREES REMARK 500 DT T 844 C5' - C4' - C3' ANGL. DEV. = -12.3 DEGREES REMARK 500 DT T 844 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DT T 844 C4 - C5 - C6 ANGL. DEV. = -7.2 DEGREES REMARK 500 DT T 844 C5 - C6 - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 73 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 26 -80.52 -112.99 REMARK 500 CYS A 37 58.11 15.71 REMARK 500 ASP A 52 -10.21 54.89 REMARK 500 LYS A 60 -120.47 59.39 REMARK 500 CYS A 88 83.46 -173.84 REMARK 500 GLN A 90 86.57 -65.49 REMARK 500 ASP A 146 -53.08 -168.20 REMARK 500 PRO A 215 -85.18 -66.20 REMARK 500 LYS A 271 32.37 -89.59 REMARK 500 GLU A 272 -8.43 -159.92 REMARK 500 ASP A 289 114.41 -160.98 REMARK 500 PHE A 308 127.96 170.49 REMARK 500 LYS A 310 30.34 27.67 REMARK 500 SER A 313 -86.39 -25.93 REMARK 500 GLU A 314 41.71 174.57 REMARK 500 VAL A 315 -4.79 151.32 REMARK 500 GLN A 334 -52.10 -24.67 REMARK 500 SER A 350 -145.41 -156.72 REMARK 500 SER A 351 37.87 -97.16 REMARK 500 GLU A 352 34.10 81.14 REMARK 500 HIS A 354 -71.16 15.85 REMARK 500 TYR A 355 -39.66 -14.19 REMARK 500 SER A 366 -15.75 -47.80 REMARK 500 ILE A 369 5.67 -59.61 REMARK 500 ASN A 393 -4.39 -51.74 REMARK 500 LEU A 405 148.89 174.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 213 LYS A 214 -146.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DC P 871 0.08 SIDE CHAIN REMARK 500 DC P 872 0.06 SIDE CHAIN REMARK 500 DG T 842 0.07 SIDE CHAIN REMARK 500 DG T 843 0.07 SIDE CHAIN REMARK 500 TYR A 68 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 871 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 34 OD2 REMARK 620 2 LEU A 35 O 88.0 REMARK 620 3 ASP A 126 OD1 96.7 85.7 REMARK 620 4 TTP A 875 O1G 100.7 88.7 161.5 REMARK 620 5 TTP A 875 O2B 176.8 89.6 85.4 77.0 REMARK 620 6 TTP A 875 O1A 112.8 159.0 89.3 89.7 69.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 872 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 34 OD1 REMARK 620 2 GLU A 127 OE2 94.6 REMARK 620 3 TTP A 875 O1A 117.1 133.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 871 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 872 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TTP A 875 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1T3N RELATED DB: PDB REMARK 900 TERNARY COMPLEX OF POL IOTA WITH DNA AND DTTP (SPACE GROUP P65) REMARK 900 RELATED ID: 2AZL RELATED DB: PDB REMARK 900 TERNARY COMPLEX OF POL IOTA WITH DNA AND DCTP REMARK 900 RELATED ID: 2FLN RELATED DB: PDB REMARK 900 BINARY COMPLEX OF CATALYTIC CORE OF HUMAN DNA POLYMERASE IOTA WITH REMARK 900 DNA (TEMPLATE A) REMARK 900 RELATED ID: 2FLP RELATED DB: PDB REMARK 900 BINARY COMPLEX OF THE CATALYTIC CORE OF HUMAN DNA POLYMERASE IOTA REMARK 900 WITH DNA (TEMPLATE G) DBREF 2FLL A 1 420 UNP Q9UNA4 POLI_HUMAN 1 420 DBREF 2FLL P 867 873 PDB 2FLL 2FLL 867 873 DBREF 2FLL T 837 847 PDB 2FLL 2FLL 837 847 SEQRES 1 P 7 DA DG DG DA DC DC DOC SEQRES 1 T 11 DT DC DT DA DG DG DG DT DC DC DT SEQRES 1 A 420 MET GLU LEU ALA ASP VAL GLY ALA ALA ALA SER SER GLN SEQRES 2 A 420 GLY VAL HIS ASP GLN VAL LEU PRO THR PRO ASN ALA SER SEQRES 3 A 420 SER ARG VAL ILE VAL HIS VAL ASP LEU ASP CYS PHE TYR SEQRES 4 A 420 ALA GLN VAL GLU MET ILE SER ASN PRO GLU LEU LYS ASP SEQRES 5 A 420 LYS PRO LEU GLY VAL GLN GLN LYS TYR LEU VAL VAL THR SEQRES 6 A 420 CYS ASN TYR GLU ALA ARG LYS LEU GLY VAL LYS LYS LEU SEQRES 7 A 420 MET ASN VAL ARG ASP ALA LYS GLU LYS CYS PRO GLN LEU SEQRES 8 A 420 VAL LEU VAL ASN GLY GLU ASP LEU THR ARG TYR ARG GLU SEQRES 9 A 420 MET SER TYR LYS VAL THR GLU LEU LEU GLU GLU PHE SER SEQRES 10 A 420 PRO VAL VAL GLU ARG LEU GLY PHE ASP GLU ASN PHE VAL SEQRES 11 A 420 ASP LEU THR GLU MET VAL GLU LYS ARG LEU GLN GLN LEU SEQRES 12 A 420 GLN SER ASP GLU LEU SER ALA VAL THR VAL SER GLY HIS SEQRES 13 A 420 VAL TYR ASN ASN GLN SER ILE ASN LEU LEU ASP VAL LEU SEQRES 14 A 420 HIS ILE ARG LEU LEU VAL GLY SER GLN ILE ALA ALA GLU SEQRES 15 A 420 MET ARG GLU ALA MET TYR ASN GLN LEU GLY LEU THR GLY SEQRES 16 A 420 CYS ALA GLY VAL ALA SER ASN LYS LEU LEU ALA LYS LEU SEQRES 17 A 420 VAL SER GLY VAL PHE LYS PRO ASN GLN GLN THR VAL LEU SEQRES 18 A 420 LEU PRO GLU SER CYS GLN HIS LEU ILE HIS SER LEU ASN SEQRES 19 A 420 HIS ILE LYS GLU ILE PRO GLY ILE GLY TYR LYS THR ALA SEQRES 20 A 420 LYS CYS LEU GLU ALA LEU GLY ILE ASN SER VAL ARG ASP SEQRES 21 A 420 LEU GLN THR PHE SER PRO LYS ILE LEU GLU LYS GLU LEU SEQRES 22 A 420 GLY ILE SER VAL ALA GLN ARG ILE GLN LYS LEU SER PHE SEQRES 23 A 420 GLY GLU ASP ASN SER PRO VAL ILE LEU SER GLY PRO PRO SEQRES 24 A 420 GLN SER PHE SER GLU GLU ASP SER PHE LYS LYS CYS SER SEQRES 25 A 420 SER GLU VAL GLU ALA LYS ASN LYS ILE GLU GLU LEU LEU SEQRES 26 A 420 ALA SER LEU LEU ASN ARG VAL CYS GLN ASP GLY ARG LYS SEQRES 27 A 420 PRO HIS THR VAL ARG LEU ILE ILE ARG ARG TYR SER SER SEQRES 28 A 420 GLU LYS HIS TYR GLY ARG GLU SER ARG GLN CYS PRO ILE SEQRES 29 A 420 PRO SER HIS VAL ILE GLN LYS LEU GLY THR GLY ASN TYR SEQRES 30 A 420 ASP VAL MET THR PRO MET VAL ASP ILE LEU MET LYS LEU SEQRES 31 A 420 PHE ARG ASN MET VAL ASN VAL LYS MET PRO PHE HIS LEU SEQRES 32 A 420 THR LEU LEU SER VAL CYS PHE CYS ASN LEU LYS ALA LEU SEQRES 33 A 420 ASN THR ALA LYS MODRES 2FLL DOC P 873 DC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HET DOC P 873 18 HET MG A 871 1 HET MG A 872 1 HET TTP A 875 29 HETNAM DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM TTP THYMIDINE-5'-TRIPHOSPHATE FORMUL 1 DOC C9 H14 N3 O6 P FORMUL 4 MG 2(MG 2+) FORMUL 6 TTP C10 H17 N2 O14 P3 FORMUL 7 HOH *91(H2 O) HELIX 1 1 CYS A 37 ASN A 47 1 11 HELIX 2 2 PRO A 48 LYS A 51 5 4 HELIX 3 3 ASN A 67 LEU A 73 1 7 HELIX 4 4 VAL A 81 GLU A 86 1 6 HELIX 5 5 LEU A 99 SER A 117 1 19 HELIX 6 6 LEU A 132 LEU A 143 1 12 HELIX 7 7 ASP A 146 VAL A 151 5 6 HELIX 8 8 ASN A 159 GLN A 161 5 3 HELIX 9 9 ASP A 167 GLY A 192 1 26 HELIX 10 10 ASN A 202 GLY A 211 1 10 HELIX 11 11 LEU A 222 GLU A 224 5 3 HELIX 12 12 SER A 225 LEU A 233 1 9 HELIX 13 13 HIS A 235 ILE A 239 5 5 HELIX 14 14 GLY A 243 LEU A 253 1 11 HELIX 15 15 SER A 257 PHE A 264 1 8 HELIX 16 16 SER A 265 GLY A 274 1 10 HELIX 17 17 GLY A 274 PHE A 286 1 13 HELIX 18 18 LYS A 318 GLY A 336 1 19 HELIX 19 19 VAL A 379 ASN A 393 1 15 SHEET 1 A 6 VAL A 120 LEU A 123 0 SHEET 2 A 6 GLU A 127 ASP A 131 -1 O PHE A 129 N GLU A 121 SHEET 3 A 6 ILE A 30 LEU A 35 -1 N VAL A 33 O ASN A 128 SHEET 4 A 6 GLY A 195 ALA A 200 -1 O CYS A 196 N ASP A 34 SHEET 5 A 6 GLN A 218 VAL A 220 1 O THR A 219 N VAL A 199 SHEET 6 A 6 HIS A 156 VAL A 157 1 N HIS A 156 O GLN A 218 SHEET 1 B 4 MET A 79 ASN A 80 0 SHEET 2 B 4 LEU A 62 CYS A 66 -1 N VAL A 63 O MET A 79 SHEET 3 B 4 LEU A 55 GLN A 59 -1 N VAL A 57 O THR A 65 SHEET 4 B 4 VAL A 92 ASN A 95 1 O VAL A 92 N GLY A 56 SHEET 1 C 4 SER A 301 SER A 307 0 SHEET 2 C 4 LEU A 405 LYS A 414 -1 O VAL A 408 N GLU A 304 SHEET 3 C 4 LYS A 338 ILE A 346 -1 N ILE A 345 O SER A 407 SHEET 4 C 4 GLU A 358 PRO A 363 -1 O CYS A 362 N VAL A 342 LINK O3' DC P 872 P DOC P 873 1555 1555 1.60 LINK OD2 ASP A 34 MG MG A 871 1555 1555 2.01 LINK OD1 ASP A 34 MG MG A 872 1555 1555 2.70 LINK O LEU A 35 MG MG A 871 1555 1555 2.20 LINK OD1 ASP A 126 MG MG A 871 1555 1555 1.98 LINK OE2 GLU A 127 MG MG A 872 1555 1555 2.39 LINK MG MG A 871 O1G TTP A 875 1555 1555 2.39 LINK MG MG A 871 O2B TTP A 875 1555 1555 2.28 LINK MG MG A 871 O1A TTP A 875 1555 1555 2.33 LINK MG MG A 872 O1A TTP A 875 1555 1555 2.42 SITE 1 AC1 5 ASP A 34 LEU A 35 ASP A 126 MG A 872 SITE 2 AC1 5 TTP A 875 SITE 1 AC2 5 ASP A 34 GLU A 127 MG A 871 TTP A 875 SITE 2 AC2 5 DOC P 873 SITE 1 AC3 21 ASP A 34 LEU A 35 ASP A 36 CYS A 37 SITE 2 AC3 21 PHE A 38 TYR A 39 VAL A 64 THR A 65 SITE 3 AC3 21 TYR A 68 ARG A 71 LYS A 77 ASP A 126 SITE 4 AC3 21 LYS A 214 MG A 871 MG A 872 HOH A 903 SITE 5 AC3 21 HOH A 908 HOH A 923 DOC P 873 DA T 840 SITE 6 AC3 21 DG T 841 CRYST1 98.329 98.329 202.186 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010170 0.005872 0.000000 0.00000 SCALE2 0.000000 0.011743 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004946 0.00000