HEADER TRANSFERASE 11-JAN-06 2FNI TITLE PSEC AMINOTRANSFERASE INVOLVED IN PSEUDOAMINIC ACID BIOSYNTHESIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINOTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 85962; SOURCE 4 STRAIN: 26695; SOURCE 5 GENE: HP0366; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS AMINOTRANSFERASE, STRUCTURAL GENOMICS, MONTREAL-KINGSTON BACTERIAL KEYWDS 2 STRUCTURAL GENOMICS INITIATIVE, BSGI, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.CYGLER,A.MATTE,V.V.LUNIN,MONTREAL-KINGSTON BACTERIAL STRUCTURAL AUTHOR 2 GENOMICS INITIATIVE (BSGI) REVDAT 5 30-AUG-23 2FNI 1 REMARK LINK REVDAT 4 13-JUL-11 2FNI 1 VERSN REVDAT 3 24-FEB-09 2FNI 1 VERSN REVDAT 2 11-APR-06 2FNI 1 JRNL REVDAT 1 24-JAN-06 2FNI 0 JRNL AUTH I.C.SCHOENHOFEN,V.V.LUNIN,J.P.JULIEN,Y.LI,E.AJAMIAN,A.MATTE, JRNL AUTH 2 M.CYGLER,J.R.BRISSON,A.AUBRY,S.M.LOGAN,S.BHATIA, JRNL AUTH 3 W.W.WAKARCHUK,N.M.YOUNG JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF PSEC, AN JRNL TITL 2 AMINOTRANSFERASE INVOLVED IN THE BIOSYNTHESIS OF PSEUDAMINIC JRNL TITL 3 ACID, AN ESSENTIAL FLAGELLAR MODIFICATION IN HELICOBACTER JRNL TITL 4 PYLORI JRNL REF J.BIOL.CHEM. V. 281 8907 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16421095 JRNL DOI 10.1074/JBC.M512987200 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 18470 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 996 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.07 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1273 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.13 REMARK 3 BIN R VALUE (WORKING SET) : 0.3100 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.3790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5921 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 21 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.87000 REMARK 3 B22 (A**2) : -2.96000 REMARK 3 B33 (A**2) : 2.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.450 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.320 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.027 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.877 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6079 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8204 ; 1.062 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 746 ; 5.249 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 269 ;38.451 ;24.721 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1093 ;14.776 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;11.462 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 918 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4502 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2788 ; 0.235 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4225 ; 0.329 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 376 ; 0.167 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 31 ; 0.223 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.209 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3781 ; 0.926 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5993 ; 1.588 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2485 ; 1.547 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2211 ; 2.632 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : B A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 1 B 374 1 REMARK 3 1 A 1 A 374 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 2954 ; 0.03 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 2954 ; 0.06 ; 0.50 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 377 A 377 4 REMARK 3 1 A 377 A 377 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 A (A): 15 ; 0.52 ; 0.50 REMARK 3 MEDIUM THERMAL 2 A (A**2): 15 ; 0.72 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2FNI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JAN-06. REMARK 100 THE DEPOSITION ID IS D_1000036086. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.4 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC MIRRORS REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS HTC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19466 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2FN6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (5 MG/ML) IN BUFFER (20 MM REMARK 280 CITRATE, PH 5.4, 0.1 M NACL, 5% (V/V) GLYCEROL, AND 10 MM DTT) REMARK 280 WAS INCUBATED WITH 0.5 MM PLP. CRYSTALS OF THE PSEC-PLP COMPLEX REMARK 280 WERE GROWN BY MIXING 1.5 MICROL PROTEIN AND 1.5 MICROL RESERVOIR REMARK 280 SOLUTION (21% PEG 3350, 0.21 M SODIUM FORMATE) BY VAPOR REMARK 280 DIFFUSION AGAINST RESERVOIR SOLUTION, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 43.70000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 76.65000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.70000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 76.65000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 375 REMARK 465 GLU B 375 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 LYS A 2 CG CD CE NZ REMARK 470 LYS A 13 CG CD CE NZ REMARK 470 LYS A 32 CG CD CE NZ REMARK 470 GLN A 292 CG CD OE1 NE2 REMARK 470 MET B 1 CG SD CE REMARK 470 LYS B 2 CG CD CE NZ REMARK 470 LYS B 13 CG CD CE NZ REMARK 470 LYS B 32 CG CD CE NZ REMARK 470 GLN B 292 CG CD OE1 NE2 REMARK 470 ASN B 330 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 2 77.02 90.99 REMARK 500 ARG A 74 69.21 -117.46 REMARK 500 ALA A 188 -66.95 71.75 REMARK 500 HIS A 210 -2.09 73.14 REMARK 500 LYS A 215 -54.98 -122.44 REMARK 500 HIS A 227 -163.57 -115.71 REMARK 500 LYS A 265 120.85 -38.72 REMARK 500 ASN A 330 82.98 -51.86 REMARK 500 CYS A 349 102.48 -163.96 REMARK 500 LYS B 2 76.88 87.72 REMARK 500 ARG B 74 68.03 -117.05 REMARK 500 ALA B 188 -69.16 75.15 REMARK 500 HIS B 210 -0.71 71.26 REMARK 500 LYS B 215 -53.85 -120.22 REMARK 500 HIS B 227 -162.79 -116.94 REMARK 500 ASN B 330 86.81 -52.16 REMARK 500 CYS B 349 106.66 -162.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP A 376 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP B 376 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2FN6 RELATED DB: PDB REMARK 900 APO PSEC REMARK 900 RELATED ID: 2FNU RELATED DB: PDB REMARK 900 RELATED ID: HEP0366_HELPY RELATED DB: TARGETDB DBREF 2FNI A 1 375 GB 2313467 AAD07433 1 375 DBREF 2FNI B 1 375 GB 2313467 AAD07433 1 375 SEQRES 1 A 375 MET LYS GLU PHE ALA TYR SER GLU PRO CYS LEU ASP LYS SEQRES 2 A 375 GLU ASP LYS LYS ALA VAL LEU GLU VAL LEU ASN SER LYS SEQRES 3 A 375 GLN LEU THR GLN GLY LYS ARG SER LEU LEU PHE GLU GLU SEQRES 4 A 375 ALA LEU CYS GLU PHE LEU GLY VAL LYS HIS ALA LEU VAL SEQRES 5 A 375 PHE ASN SER ALA THR SER ALA LEU LEU THR LEU TYR ARG SEQRES 6 A 375 ASN PHE SER GLU PHE SER ALA ASP ARG ASN GLU ILE ILE SEQRES 7 A 375 THR THR PRO ILE SER PHE VAL ALA THR ALA ASN MET LEU SEQRES 8 A 375 LEU GLU SER GLY TYR THR PRO VAL PHE ALA GLY ILE LYS SEQRES 9 A 375 ASN ASP GLY ASN ILE ASP GLU LEU ALA LEU GLU LYS LEU SEQRES 10 A 375 ILE ASN GLU ARG THR LYS ALA ILE VAL SER VAL ASP TYR SEQRES 11 A 375 ALA GLY LYS SER VAL GLU VAL GLU SER VAL GLN LYS LEU SEQRES 12 A 375 CYS LYS LYS HIS SER LEU SER PHE LEU SER ASP SER SER SEQRES 13 A 375 HIS ALA LEU GLY SER GLU TYR GLN ASN LYS LYS VAL GLY SEQRES 14 A 375 GLY PHE ALA LEU ALA SER VAL PHE SER PHE HIS ALA ILE SEQRES 15 A 375 LYS PRO ILE THR THR ALA GLU GLY GLY ALA VAL VAL THR SEQRES 16 A 375 ASN ASP SER GLU LEU HIS GLU LYS MET LYS LEU PHE ARG SEQRES 17 A 375 SER HIS GLY MET LEU LYS LYS ASP PHE PHE GLU GLY GLU SEQRES 18 A 375 VAL LYS SER ILE GLY HIS ASN PHE ARG LEU ASN GLU ILE SEQRES 19 A 375 GLN SER ALA LEU GLY LEU SER GLN LEU LYS LYS ALA PRO SEQRES 20 A 375 PHE LEU MET GLN LYS ARG GLU GLU ALA ALA LEU THR TYR SEQRES 21 A 375 ASP ARG ILE PHE LYS ASP ASN PRO TYR PHE THR PRO LEU SEQRES 22 A 375 HIS PRO LEU LEU LYS ASP LYS SER SER ASN HIS LEU TYR SEQRES 23 A 375 PRO ILE LEU MET HIS GLN LYS PHE PHE THR CYS LYS LYS SEQRES 24 A 375 LEU ILE LEU GLU SER LEU HIS LYS ARG GLY ILE LEU ALA SEQRES 25 A 375 GLN VAL HIS TYR LYS PRO ILE TYR GLN TYR GLN LEU TYR SEQRES 26 A 375 GLN GLN LEU PHE ASN THR ALA PRO LEU LYS SER ALA GLU SEQRES 27 A 375 ASP PHE TYR HIS ALA GLU ILE SER LEU PRO CYS HIS ALA SEQRES 28 A 375 ASN LEU ASN LEU GLU SER VAL GLN ASN ILE ALA HIS SER SEQRES 29 A 375 VAL LEU LYS THR PHE GLU SER PHE LYS ILE GLU SEQRES 1 B 375 MET LYS GLU PHE ALA TYR SER GLU PRO CYS LEU ASP LYS SEQRES 2 B 375 GLU ASP LYS LYS ALA VAL LEU GLU VAL LEU ASN SER LYS SEQRES 3 B 375 GLN LEU THR GLN GLY LYS ARG SER LEU LEU PHE GLU GLU SEQRES 4 B 375 ALA LEU CYS GLU PHE LEU GLY VAL LYS HIS ALA LEU VAL SEQRES 5 B 375 PHE ASN SER ALA THR SER ALA LEU LEU THR LEU TYR ARG SEQRES 6 B 375 ASN PHE SER GLU PHE SER ALA ASP ARG ASN GLU ILE ILE SEQRES 7 B 375 THR THR PRO ILE SER PHE VAL ALA THR ALA ASN MET LEU SEQRES 8 B 375 LEU GLU SER GLY TYR THR PRO VAL PHE ALA GLY ILE LYS SEQRES 9 B 375 ASN ASP GLY ASN ILE ASP GLU LEU ALA LEU GLU LYS LEU SEQRES 10 B 375 ILE ASN GLU ARG THR LYS ALA ILE VAL SER VAL ASP TYR SEQRES 11 B 375 ALA GLY LYS SER VAL GLU VAL GLU SER VAL GLN LYS LEU SEQRES 12 B 375 CYS LYS LYS HIS SER LEU SER PHE LEU SER ASP SER SER SEQRES 13 B 375 HIS ALA LEU GLY SER GLU TYR GLN ASN LYS LYS VAL GLY SEQRES 14 B 375 GLY PHE ALA LEU ALA SER VAL PHE SER PHE HIS ALA ILE SEQRES 15 B 375 LYS PRO ILE THR THR ALA GLU GLY GLY ALA VAL VAL THR SEQRES 16 B 375 ASN ASP SER GLU LEU HIS GLU LYS MET LYS LEU PHE ARG SEQRES 17 B 375 SER HIS GLY MET LEU LYS LYS ASP PHE PHE GLU GLY GLU SEQRES 18 B 375 VAL LYS SER ILE GLY HIS ASN PHE ARG LEU ASN GLU ILE SEQRES 19 B 375 GLN SER ALA LEU GLY LEU SER GLN LEU LYS LYS ALA PRO SEQRES 20 B 375 PHE LEU MET GLN LYS ARG GLU GLU ALA ALA LEU THR TYR SEQRES 21 B 375 ASP ARG ILE PHE LYS ASP ASN PRO TYR PHE THR PRO LEU SEQRES 22 B 375 HIS PRO LEU LEU LYS ASP LYS SER SER ASN HIS LEU TYR SEQRES 23 B 375 PRO ILE LEU MET HIS GLN LYS PHE PHE THR CYS LYS LYS SEQRES 24 B 375 LEU ILE LEU GLU SER LEU HIS LYS ARG GLY ILE LEU ALA SEQRES 25 B 375 GLN VAL HIS TYR LYS PRO ILE TYR GLN TYR GLN LEU TYR SEQRES 26 B 375 GLN GLN LEU PHE ASN THR ALA PRO LEU LYS SER ALA GLU SEQRES 27 B 375 ASP PHE TYR HIS ALA GLU ILE SER LEU PRO CYS HIS ALA SEQRES 28 B 375 ASN LEU ASN LEU GLU SER VAL GLN ASN ILE ALA HIS SER SEQRES 29 B 375 VAL LEU LYS THR PHE GLU SER PHE LYS ILE GLU HET PLP A 376 15 HET PLP B 376 15 HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETSYN PLP VITAMIN B6 PHOSPHATE FORMUL 3 PLP 2(C8 H10 N O6 P) FORMUL 5 HOH *21(H2 O) HELIX 1 1 GLU A 14 ASN A 24 1 11 HELIX 2 2 ARG A 33 GLY A 46 1 14 HELIX 3 3 SER A 55 PHE A 67 1 13 HELIX 4 4 VAL A 85 SER A 94 1 10 HELIX 5 5 ASP A 110 ILE A 118 5 9 HELIX 6 6 TYR A 130 LYS A 133 5 4 HELIX 7 7 GLU A 136 HIS A 147 1 12 HELIX 8 8 ASP A 197 ARG A 208 1 12 HELIX 9 9 ASN A 232 LYS A 245 1 14 HELIX 10 10 LYS A 245 LYS A 265 1 21 HELIX 11 11 HIS A 274 LEU A 277 5 4 HELIX 12 12 PHE A 294 THR A 296 5 3 HELIX 13 13 CYS A 297 ARG A 308 1 12 HELIX 14 14 PRO A 318 GLN A 321 5 4 HELIX 15 15 TYR A 322 PHE A 329 1 8 HELIX 16 16 LEU A 334 ALA A 343 1 10 HELIX 17 17 ASN A 354 PHE A 372 1 19 HELIX 18 18 GLU B 14 ASN B 24 1 11 HELIX 19 19 ARG B 33 GLY B 46 1 14 HELIX 20 20 SER B 55 PHE B 67 1 13 HELIX 21 21 VAL B 85 SER B 94 1 10 HELIX 22 22 ASP B 110 ILE B 118 5 9 HELIX 23 23 TYR B 130 LYS B 133 5 4 HELIX 24 24 GLU B 136 HIS B 147 1 12 HELIX 25 25 ASP B 197 SER B 209 1 13 HELIX 26 26 ASN B 232 LYS B 245 1 14 HELIX 27 27 LYS B 245 LYS B 265 1 21 HELIX 28 28 HIS B 274 LEU B 277 5 4 HELIX 29 29 PHE B 294 THR B 296 5 3 HELIX 30 30 CYS B 297 ARG B 308 1 12 HELIX 31 31 PRO B 318 GLN B 321 5 4 HELIX 32 32 TYR B 322 PHE B 329 1 8 HELIX 33 33 LEU B 334 ALA B 343 1 10 HELIX 34 34 ASN B 354 PHE B 372 1 19 SHEET 1 A 7 HIS A 49 PHE A 53 0 SHEET 2 A 7 GLY A 191 THR A 195 -1 O GLY A 191 N PHE A 53 SHEET 3 A 7 ALA A 174 SER A 178 -1 N SER A 175 O VAL A 194 SHEET 4 A 7 SER A 150 ASP A 154 1 N SER A 153 O VAL A 176 SHEET 5 A 7 THR A 122 VAL A 128 1 N SER A 127 O ASP A 154 SHEET 6 A 7 GLU A 76 THR A 79 1 N ILE A 78 O VAL A 126 SHEET 7 A 7 THR A 97 PHE A 100 1 O VAL A 99 N ILE A 77 SHEET 1 B 2 GLU A 162 TYR A 163 0 SHEET 2 B 2 LYS A 166 LYS A 167 -1 O LYS A 166 N TYR A 163 SHEET 1 C 2 MET A 212 ASP A 216 0 SHEET 2 C 2 GLU A 219 VAL A 222 -1 O GLU A 221 N LEU A 213 SHEET 1 D 3 PHE A 270 PRO A 272 0 SHEET 2 D 3 TYR A 286 MET A 290 -1 O LEU A 289 N THR A 271 SHEET 3 D 3 GLU A 344 LEU A 347 -1 O ILE A 345 N ILE A 288 SHEET 1 E 7 HIS B 49 PHE B 53 0 SHEET 2 E 7 GLY B 191 THR B 195 -1 O GLY B 191 N PHE B 53 SHEET 3 E 7 ALA B 174 SER B 178 -1 N SER B 175 O VAL B 194 SHEET 4 E 7 SER B 150 ASP B 154 1 N SER B 153 O VAL B 176 SHEET 5 E 7 THR B 122 VAL B 128 1 N SER B 127 O ASP B 154 SHEET 6 E 7 GLU B 76 THR B 79 1 N GLU B 76 O LYS B 123 SHEET 7 E 7 THR B 97 PHE B 100 1 O VAL B 99 N ILE B 77 SHEET 1 F 2 GLU B 162 TYR B 163 0 SHEET 2 F 2 LYS B 166 LYS B 167 -1 O LYS B 166 N TYR B 163 SHEET 1 G 2 MET B 212 ASP B 216 0 SHEET 2 G 2 GLU B 219 VAL B 222 -1 O GLU B 221 N LEU B 213 SHEET 1 H 3 PHE B 270 PRO B 272 0 SHEET 2 H 3 TYR B 286 MET B 290 -1 O LEU B 289 N THR B 271 SHEET 3 H 3 GLU B 344 LEU B 347 -1 O ILE B 345 N ILE B 288 LINK NZ LYS A 183 C4A PLP A 376 1555 1555 2.58 LINK NZ LYS B 183 C4A PLP B 376 1555 1555 2.45 CISPEP 1 HIS A 315 TYR A 316 0 3.03 CISPEP 2 HIS B 315 TYR B 316 0 2.25 SITE 1 AC1 14 SER A 55 ALA A 56 THR A 57 SER A 83 SITE 2 AC1 14 PHE A 84 ASP A 154 SER A 156 HIS A 157 SITE 3 AC1 14 SER A 178 LYS A 183 GLY A 190 TYR A 316 SITE 4 AC1 14 HOH A 386 ASN B 228 SITE 1 AC2 15 ASN A 228 HOH A 377 SER B 55 ALA B 56 SITE 2 AC2 15 THR B 57 SER B 83 ASP B 154 SER B 156 SITE 3 AC2 15 HIS B 157 SER B 178 HIS B 180 LYS B 183 SITE 4 AC2 15 GLY B 190 TYR B 316 HOH B 378 CRYST1 87.400 153.300 70.700 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011442 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006523 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014144 0.00000