HEADER HYDROLASE 15-JAN-06 2FP0 TITLE HUMAN ADP-RIBOSYLHYDROLASE 3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADP-RIBOSYLHYDROLASE LIKE 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 19-347; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALL ALPHA-HELICAL, METAL BINDING, ADP-RIBOSE BINDING, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.MUELLER-DIECKMANN,M.S.WEISS,F.KOCH-NOLTE REVDAT 5 30-AUG-23 2FP0 1 REMARK LINK REVDAT 4 13-JUL-11 2FP0 1 VERSN REVDAT 3 24-FEB-09 2FP0 1 VERSN REVDAT 2 31-OCT-06 2FP0 1 JRNL REVDAT 1 10-OCT-06 2FP0 0 JRNL AUTH C.MUELLER-DIECKMANN,S.KERNSTOCK,M.LISUREK,J.P.VON KRIES, JRNL AUTH 2 F.HAAG,M.S.WEISS,F.KOCH-NOLTE JRNL TITL THE STRUCTURE OF HUMAN ADP-RIBOSYLHYDROLASE 3 (ARH3) JRNL TITL 2 PROVIDES INSIGHTS INTO THE REVERSIBILITY OF PROTEIN JRNL TITL 3 ADP-RIBOSYLATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 103 15026 2006 JRNL REFN ISSN 0027-8424 JRNL PMID 17015823 JRNL DOI 10.1073/PNAS.0606762103 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 42868 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.000 REMARK 3 FREE R VALUE TEST SET COUNT : 869 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3123 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 63 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5186 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 147 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.61000 REMARK 3 B22 (A**2) : -2.23000 REMARK 3 B33 (A**2) : 1.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.65000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.194 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.169 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.145 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.721 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5278 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4734 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7132 ; 1.925 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11006 ; 1.023 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 674 ; 6.694 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 246 ;37.951 ;24.309 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 882 ;17.862 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;18.274 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 786 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6000 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1072 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1324 ; 0.234 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4725 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2660 ; 0.190 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 3264 ; 0.093 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 173 ; 0.178 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.510 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 6 ; 0.306 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 36 ; 0.197 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.233 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4218 ; 1.359 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1394 ; 0.332 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5328 ; 1.869 ; 2.500 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2192 ; 4.705 ; 5.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1804 ; 6.543 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 43 2 REMARK 3 1 B 1 B 43 2 REMARK 3 2 A 55 A 347 2 REMARK 3 2 B 55 B 347 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 1978 ; 0.06 ; 0.05 REMARK 3 MEDIUM POSITIONAL 1 A (A): 2942 ; 0.36 ; 0.50 REMARK 3 TIGHT THERMAL 1 A (A**2): 1978 ; 0.76 ; 1.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 2942 ; 1.17 ; 2.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 347 REMARK 3 ORIGIN FOR THE GROUP (A): 16.9276 -0.4468 1.6172 REMARK 3 T TENSOR REMARK 3 T11: -0.3225 T22: -0.2321 REMARK 3 T33: -0.1643 T12: -0.0309 REMARK 3 T13: 0.0710 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 1.7652 L22: 3.5581 REMARK 3 L33: 2.9281 L12: 0.0016 REMARK 3 L13: 0.0919 L23: -0.3715 REMARK 3 S TENSOR REMARK 3 S11: 0.0004 S12: 0.0071 S13: -0.0695 REMARK 3 S21: -0.0079 S22: 0.0078 S23: 0.3532 REMARK 3 S31: 0.2137 S32: -0.2428 S33: -0.0082 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 347 REMARK 3 ORIGIN FOR THE GROUP (A): 40.1861 3.2764 47.5652 REMARK 3 T TENSOR REMARK 3 T11: -0.0752 T22: -0.0535 REMARK 3 T33: -0.1987 T12: -0.0345 REMARK 3 T13: -0.0225 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 2.2257 L22: 3.2580 REMARK 3 L33: 2.9253 L12: 0.1046 REMARK 3 L13: 0.2578 L23: -0.5283 REMARK 3 S TENSOR REMARK 3 S11: -0.0720 S12: -0.1950 S13: -0.0479 REMARK 3 S21: 0.1865 S22: 0.0520 S23: 0.2144 REMARK 3 S31: 0.1862 S32: -0.2702 S33: 0.0200 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2FP0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JAN-06. REMARK 100 THE DEPOSITION ID IS D_1000036136. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.50 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44248 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 99.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: 2FOZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.31500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 47 REMARK 465 THR A 48 REMARK 465 PRO A 49 REMARK 465 GLY A 50 REMARK 465 SER A 51 REMARK 465 GLU A 52 REMARK 465 ARG A 53 REMARK 465 THR A 54 REMARK 465 GLY B 47 REMARK 465 THR B 48 REMARK 465 PRO B 49 REMARK 465 GLY B 50 REMARK 465 SER B 51 REMARK 465 GLU B 52 REMARK 465 ARG B 53 REMARK 465 THR B 54 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N SER B 347 O HOH B 547 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA A 64 CA ALA A 64 CB -0.134 REMARK 500 ALA A 68 CA ALA A 68 CB -0.130 REMARK 500 TYR A 313 CD1 TYR A 313 CE1 0.122 REMARK 500 GLU B 121 CG GLU B 121 CD 0.104 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 61 CB - CG - OD1 ANGL. DEV. = 8.4 DEGREES REMARK 500 ASP A 61 CB - CG - OD2 ANGL. DEV. = -10.0 DEGREES REMARK 500 ARG A 98 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 LEU A 214 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 ARG A 270 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ASP A 300 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 MET A 316 CG - SD - CE ANGL. DEV. = 14.0 DEGREES REMARK 500 LEU A 340 CB - CG - CD2 ANGL. DEV. = 10.6 DEGREES REMARK 500 ARG A 342 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 342 NE - CZ - NH2 ANGL. DEV. = -6.8 DEGREES REMARK 500 PRO B 44 C - N - CA ANGL. DEV. = 24.7 DEGREES REMARK 500 PRO B 44 C - N - CD ANGL. DEV. = -19.8 DEGREES REMARK 500 PRO B 44 N - CA - C ANGL. DEV. = 16.3 DEGREES REMARK 500 ASP B 97 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG B 124 CG - CD - NE ANGL. DEV. = 13.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 28 -95.64 -61.45 REMARK 500 PRO A 44 -150.97 -86.10 REMARK 500 ASP A 45 -107.92 -122.05 REMARK 500 THR A 60 -153.51 -125.82 REMARK 500 ALA A 78 163.90 178.39 REMARK 500 GLU A 189 115.47 -29.29 REMARK 500 GLU A 222 68.39 29.24 REMARK 500 GLU A 223 150.82 51.39 REMARK 500 ASN A 253 32.27 -149.63 REMARK 500 SER A 260 -42.51 -142.69 REMARK 500 ASP B 28 -93.99 -64.75 REMARK 500 PRO B 44 -36.59 -5.33 REMARK 500 THR B 60 -153.96 -125.30 REMARK 500 ALA B 78 162.81 179.98 REMARK 500 ASN B 128 50.18 36.97 REMARK 500 GLU B 189 126.62 -33.60 REMARK 500 GLU B 222 69.11 32.90 REMARK 500 GLU B 223 155.20 44.43 REMARK 500 ALA B 240 -71.59 -41.21 REMARK 500 ASN B 253 34.94 -146.99 REMARK 500 SER B 260 -47.49 -133.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 43 PRO A 44 -134.84 REMARK 500 GLU A 222 GLU A 223 134.15 REMARK 500 GLU B 43 PRO B 44 -138.26 REMARK 500 GLU B 222 GLU B 223 140.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 60 OG1 REMARK 620 2 ASP A 61 OD1 81.8 REMARK 620 3 ASP A 62 OD2 77.2 81.5 REMARK 620 4 ASP A 300 OD2 121.8 145.4 80.2 REMARK 620 5 HOH A 403 O 138.8 70.1 69.4 76.0 REMARK 620 6 HOH A 405 O 88.3 66.7 146.7 132.1 106.6 REMARK 620 7 HOH A 406 O 78.6 132.9 133.6 79.8 142.5 70.3 REMARK 620 8 HOH A 407 O 156.3 100.2 126.5 68.6 61.6 71.3 83.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 298 OD1 REMARK 620 2 ASP A 300 OD1 68.9 REMARK 620 3 ASP A 300 OD2 115.8 50.7 REMARK 620 4 THR A 301 OG1 94.1 97.5 76.0 REMARK 620 5 HOH A 403 O 165.7 122.5 72.9 76.7 REMARK 620 6 HOH A 404 O 60.2 70.8 110.0 154.0 129.3 REMARK 620 7 HOH A 407 O 128.8 81.2 65.7 131.4 64.4 71.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 60 OG1 REMARK 620 2 ASP B 61 OD1 83.7 REMARK 620 3 ASP B 62 OD2 73.7 81.2 REMARK 620 4 ASP B 300 OD2 117.3 145.2 79.1 REMARK 620 5 HOH B 527 O 139.0 71.3 70.8 75.2 REMARK 620 6 HOH B 528 O 160.8 103.4 124.6 66.2 59.7 REMARK 620 7 HOH B 529 O 103.1 62.6 143.7 129.8 93.7 66.1 REMARK 620 8 HOH B 531 O 83.6 130.8 138.6 81.4 137.3 78.3 74.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 298 OD1 REMARK 620 2 ASP B 298 OD2 44.2 REMARK 620 3 ASP B 300 OD1 65.8 99.5 REMARK 620 4 ASP B 300 OD2 116.4 138.0 50.8 REMARK 620 5 THR B 301 OG1 101.5 73.0 90.7 78.1 REMARK 620 6 HOH B 527 O 171.0 127.2 122.4 71.7 75.7 REMARK 620 7 HOH B 528 O 119.6 153.6 86.5 64.1 132.9 66.7 REMARK 620 8 HOH B 530 O 101.3 65.5 165.0 140.6 84.1 70.0 107.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2FOZ RELATED DB: PDB DBREF 2FP0 A 1 347 UNP Q9NX46 Q9NX46_HUMAN 19 363 DBREF 2FP0 B 1 347 UNP Q9NX46 Q9NX46_HUMAN 19 363 SEQRES 1 A 347 MET ALA SER LEU SER ARG PHE ARG GLY CYS LEU ALA GLY SEQRES 2 A 347 ALA LEU LEU GLY ASP CYS VAL GLY SER PHE TYR GLU ALA SEQRES 3 A 347 HIS ASP THR VAL ASP LEU THR SER VAL LEU ARG HIS VAL SEQRES 4 A 347 GLN SER LEU GLU PRO ASP PRO GLY THR PRO GLY SER GLU SEQRES 5 A 347 ARG THR GLU ALA LEU TYR TYR THR ASP ASP THR ALA MET SEQRES 6 A 347 ALA ARG ALA LEU VAL GLN SER LEU LEU ALA LYS GLU ALA SEQRES 7 A 347 PHE ASP GLU VAL ASP MET ALA HIS ARG PHE ALA GLN GLU SEQRES 8 A 347 TYR LYS LYS ASP PRO ASP ARG GLY TYR GLY ALA GLY VAL SEQRES 9 A 347 VAL THR VAL PHE LYS LYS LEU LEU ASN PRO LYS CYS ARG SEQRES 10 A 347 ASP VAL PHE GLU PRO ALA ARG ALA GLN PHE ASN GLY LYS SEQRES 11 A 347 GLY SER TYR GLY ASN GLY GLY ALA MET ARG VAL ALA GLY SEQRES 12 A 347 ILE SER LEU ALA TYR SER SER VAL GLN ASP VAL GLN LYS SEQRES 13 A 347 PHE ALA ARG LEU SER ALA GLN LEU THR HIS ALA SER SER SEQRES 14 A 347 LEU GLY TYR ASN GLY ALA ILE LEU GLN ALA LEU ALA VAL SEQRES 15 A 347 HIS LEU ALA LEU GLN GLY GLU SER SER SER GLU HIS PHE SEQRES 16 A 347 LEU LYS GLN LEU LEU GLY HIS MET GLU ASP LEU GLU GLY SEQRES 17 A 347 ASP ALA GLN SER VAL LEU ASP ALA ARG GLU LEU GLY MET SEQRES 18 A 347 GLU GLU ARG PRO TYR SER SER ARG LEU LYS LYS ILE GLY SEQRES 19 A 347 GLU LEU LEU ASP GLN ALA SER VAL THR ARG GLU GLU VAL SEQRES 20 A 347 VAL SER GLU LEU GLY ASN GLY ILE ALA ALA PHE GLU SER SEQRES 21 A 347 VAL PRO THR ALA ILE TYR CYS PHE LEU ARG CYS MET GLU SEQRES 22 A 347 PRO ASP PRO GLU ILE PRO SER ALA PHE ASN SER LEU GLN SEQRES 23 A 347 ARG THR LEU ILE TYR SER ILE SER LEU GLY GLY ASP THR SEQRES 24 A 347 ASP THR ILE ALA THR MET ALA GLY ALA ILE ALA GLY ALA SEQRES 25 A 347 TYR TYR GLY MET ASP GLN VAL PRO GLU SER TRP GLN GLN SEQRES 26 A 347 SER CYS GLU GLY TYR GLU GLU THR ASP ILE LEU ALA GLN SEQRES 27 A 347 SER LEU HIS ARG VAL PHE GLN LYS SER SEQRES 1 B 347 MET ALA SER LEU SER ARG PHE ARG GLY CYS LEU ALA GLY SEQRES 2 B 347 ALA LEU LEU GLY ASP CYS VAL GLY SER PHE TYR GLU ALA SEQRES 3 B 347 HIS ASP THR VAL ASP LEU THR SER VAL LEU ARG HIS VAL SEQRES 4 B 347 GLN SER LEU GLU PRO ASP PRO GLY THR PRO GLY SER GLU SEQRES 5 B 347 ARG THR GLU ALA LEU TYR TYR THR ASP ASP THR ALA MET SEQRES 6 B 347 ALA ARG ALA LEU VAL GLN SER LEU LEU ALA LYS GLU ALA SEQRES 7 B 347 PHE ASP GLU VAL ASP MET ALA HIS ARG PHE ALA GLN GLU SEQRES 8 B 347 TYR LYS LYS ASP PRO ASP ARG GLY TYR GLY ALA GLY VAL SEQRES 9 B 347 VAL THR VAL PHE LYS LYS LEU LEU ASN PRO LYS CYS ARG SEQRES 10 B 347 ASP VAL PHE GLU PRO ALA ARG ALA GLN PHE ASN GLY LYS SEQRES 11 B 347 GLY SER TYR GLY ASN GLY GLY ALA MET ARG VAL ALA GLY SEQRES 12 B 347 ILE SER LEU ALA TYR SER SER VAL GLN ASP VAL GLN LYS SEQRES 13 B 347 PHE ALA ARG LEU SER ALA GLN LEU THR HIS ALA SER SER SEQRES 14 B 347 LEU GLY TYR ASN GLY ALA ILE LEU GLN ALA LEU ALA VAL SEQRES 15 B 347 HIS LEU ALA LEU GLN GLY GLU SER SER SER GLU HIS PHE SEQRES 16 B 347 LEU LYS GLN LEU LEU GLY HIS MET GLU ASP LEU GLU GLY SEQRES 17 B 347 ASP ALA GLN SER VAL LEU ASP ALA ARG GLU LEU GLY MET SEQRES 18 B 347 GLU GLU ARG PRO TYR SER SER ARG LEU LYS LYS ILE GLY SEQRES 19 B 347 GLU LEU LEU ASP GLN ALA SER VAL THR ARG GLU GLU VAL SEQRES 20 B 347 VAL SER GLU LEU GLY ASN GLY ILE ALA ALA PHE GLU SER SEQRES 21 B 347 VAL PRO THR ALA ILE TYR CYS PHE LEU ARG CYS MET GLU SEQRES 22 B 347 PRO ASP PRO GLU ILE PRO SER ALA PHE ASN SER LEU GLN SEQRES 23 B 347 ARG THR LEU ILE TYR SER ILE SER LEU GLY GLY ASP THR SEQRES 24 B 347 ASP THR ILE ALA THR MET ALA GLY ALA ILE ALA GLY ALA SEQRES 25 B 347 TYR TYR GLY MET ASP GLN VAL PRO GLU SER TRP GLN GLN SEQRES 26 B 347 SER CYS GLU GLY TYR GLU GLU THR ASP ILE LEU ALA GLN SEQRES 27 B 347 SER LEU HIS ARG VAL PHE GLN LYS SER HET MG A 401 1 HET MG A 402 1 HET MG B 501 1 HET MG B 502 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG 4(MG 2+) FORMUL 7 HOH *147(H2 O) HELIX 1 1 ALA A 2 SER A 22 1 21 HELIX 2 2 PHE A 23 GLU A 25 5 3 HELIX 3 3 ASP A 31 SER A 41 1 11 HELIX 4 4 THR A 60 GLU A 77 1 18 HELIX 5 5 ASP A 80 ASP A 95 1 16 HELIX 6 6 GLY A 101 LEU A 112 1 12 HELIX 7 7 PHE A 120 LYS A 130 1 11 HELIX 8 8 GLY A 134 ALA A 138 5 5 HELIX 9 9 VAL A 141 TYR A 148 1 8 HELIX 10 10 SER A 150 LEU A 164 1 15 HELIX 11 11 SER A 168 LEU A 186 1 19 HELIX 12 12 SER A 191 GLU A 207 1 17 HELIX 13 13 ASP A 209 LEU A 219 1 11 HELIX 14 14 ARG A 224 ASP A 238 1 15 HELIX 15 15 THR A 243 GLY A 252 1 10 HELIX 16 16 ALA A 256 GLU A 259 5 4 HELIX 17 17 SER A 260 CYS A 271 1 12 HELIX 18 18 ASN A 283 SER A 294 1 12 HELIX 19 19 ASP A 298 GLY A 315 1 18 HELIX 20 20 MET A 316 VAL A 319 5 4 HELIX 21 21 PRO A 320 GLN A 325 1 6 HELIX 22 22 GLY A 329 GLN A 345 1 17 HELIX 23 23 ALA B 2 SER B 22 1 21 HELIX 24 24 PHE B 23 GLU B 25 5 3 HELIX 25 25 ASP B 31 LEU B 42 1 12 HELIX 26 26 THR B 60 GLU B 77 1 18 HELIX 27 27 ASP B 80 ASP B 95 1 16 HELIX 28 28 GLY B 101 ASN B 113 1 13 HELIX 29 29 PHE B 120 LYS B 130 1 11 HELIX 30 30 VAL B 141 TYR B 148 1 8 HELIX 31 31 SER B 150 LEU B 164 1 15 HELIX 32 32 SER B 168 LEU B 186 1 19 HELIX 33 33 SER B 191 GLY B 208 1 18 HELIX 34 34 ASP B 209 GLY B 220 1 12 HELIX 35 35 ARG B 224 ASP B 238 1 15 HELIX 36 36 THR B 243 GLY B 252 1 10 HELIX 37 37 ALA B 256 GLU B 259 5 4 HELIX 38 38 SER B 260 CYS B 271 1 12 HELIX 39 39 ASN B 283 LEU B 295 1 13 HELIX 40 40 ASP B 298 GLY B 315 1 18 HELIX 41 41 MET B 316 VAL B 319 5 4 HELIX 42 42 PRO B 320 GLN B 325 1 6 HELIX 43 43 GLY B 329 GLN B 345 1 17 LINK OG1 THR A 60 MG MG A 401 1555 1555 2.52 LINK OD1 ASP A 61 MG MG A 401 1555 1555 2.15 LINK OD2 ASP A 62 MG MG A 401 1555 1555 2.33 LINK OD1 ASP A 298 MG MG A 402 1555 1555 2.29 LINK OD2 ASP A 300 MG MG A 401 1555 1555 2.18 LINK OD1 ASP A 300 MG MG A 402 1555 1555 2.45 LINK OD2 ASP A 300 MG MG A 402 1555 1555 2.52 LINK OG1 THR A 301 MG MG A 402 1555 1555 2.55 LINK MG MG A 401 O HOH A 403 1555 1555 2.81 LINK MG MG A 401 O HOH A 405 1555 1555 2.27 LINK MG MG A 401 O HOH A 406 1555 1555 2.39 LINK MG MG A 401 O HOH A 407 1555 1555 2.54 LINK MG MG A 402 O HOH A 403 1555 1555 2.71 LINK MG MG A 402 O HOH A 404 1555 1555 2.42 LINK MG MG A 402 O HOH A 407 1555 1555 2.41 LINK OG1 THR B 60 MG MG B 501 1555 1555 2.44 LINK OD1 ASP B 61 MG MG B 501 1555 1555 2.10 LINK OD2 ASP B 62 MG MG B 501 1555 1555 2.13 LINK OD1 ASP B 298 MG MG B 502 1555 1555 2.29 LINK OD2 ASP B 298 MG MG B 502 1555 1555 3.11 LINK OD2 ASP B 300 MG MG B 501 1555 1555 2.12 LINK OD1 ASP B 300 MG MG B 502 1555 1555 2.56 LINK OD2 ASP B 300 MG MG B 502 1555 1555 2.64 LINK OG1 THR B 301 MG MG B 502 1555 1555 2.52 LINK MG MG B 501 O HOH B 527 1555 1555 2.85 LINK MG MG B 501 O HOH B 528 1555 1555 2.71 LINK MG MG B 501 O HOH B 529 1555 1555 2.18 LINK MG MG B 501 O HOH B 531 1555 1555 2.39 LINK MG MG B 502 O HOH B 527 1555 1555 2.63 LINK MG MG B 502 O HOH B 528 1555 1555 2.39 LINK MG MG B 502 O HOH B 530 1555 1555 2.54 CISPEP 1 PRO A 44 ASP A 45 0 6.80 CISPEP 2 ASP A 45 PRO A 46 0 -24.76 SITE 1 AC1 8 THR A 60 ASP A 61 ASP A 62 ASP A 300 SITE 2 AC1 8 HOH A 403 HOH A 405 HOH A 406 HOH A 407 SITE 1 AC2 6 ASP A 298 ASP A 300 THR A 301 HOH A 403 SITE 2 AC2 6 HOH A 404 HOH A 407 SITE 1 AC3 8 THR B 60 ASP B 61 ASP B 62 ASP B 300 SITE 2 AC3 8 HOH B 527 HOH B 528 HOH B 529 HOH B 531 SITE 1 AC4 6 ASP B 298 ASP B 300 THR B 301 HOH B 527 SITE 2 AC4 6 HOH B 528 HOH B 530 CRYST1 57.330 60.630 102.880 90.00 96.43 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017443 0.000000 0.001966 0.00000 SCALE2 0.000000 0.016493 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009782 0.00000