HEADER LYASE 16-JAN-06 2FPC TITLE STRUCTURE OF STRICTOSIDINE SYNTHASE, THE BIOSYNTHETIC ENTRY TO THE TITLE 2 MONOTERPENOID INDOLE ALKALOID FAMILY COMPND MOL_ID: 1; COMPND 2 MOLECULE: STRICTOSIDINE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 4.3.3.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RAUVOLFIA SERPENTINA; SOURCE 3 ORGANISM_COMMON: SERPENTWOOD; SOURCE 4 ORGANISM_TAXID: 4060; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: M15[PREP4]; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE-2 KEYWDS SIX BLADED BETA PROPELLER FOLD, STR1, SYNTHASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR S.PANJIKAR REVDAT 6 03-APR-24 2FPC 1 HETSYN REVDAT 5 29-JUL-20 2FPC 1 COMPND REMARK HETNAM SITE REVDAT 5 2 1 ATOM REVDAT 4 18-OCT-17 2FPC 1 REMARK REVDAT 3 13-JUL-11 2FPC 1 VERSN REVDAT 2 24-FEB-09 2FPC 1 VERSN REVDAT 1 23-MAY-06 2FPC 0 JRNL AUTH X.MA,S.PANJIKAR,J.KOEPKE,E.LORIS,J.STOCKIGT JRNL TITL THE STRUCTURE OF RAUVOLFIA SERPENTINA STRICTOSIDINE SYNTHASE JRNL TITL 2 IS A NOVEL SIX-BLADED BETA-PROPELLER FOLD IN PLANT PROTEINS JRNL REF PLANT CELL V. 18 907 2006 JRNL REFN ISSN 1040-4651 JRNL PMID 16531499 JRNL DOI 10.1105/TPC.105.038018 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 19104 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.000 REMARK 3 FREE R VALUE TEST SET COUNT : 787 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1372 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 63 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4764 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 102 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 50.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.62000 REMARK 3 B22 (A**2) : 4.62000 REMARK 3 B33 (A**2) : -6.93000 REMARK 3 B12 (A**2) : 2.31000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.371 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.255 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.451 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4952 ; 0.020 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6740 ; 1.833 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 602 ; 7.145 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 734 ; 0.118 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3812 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2993 ; 0.256 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 320 ; 0.196 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 36 ; 0.273 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.104 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2996 ; 0.685 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4850 ; 1.346 ; 2.500 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1956 ; 3.464 ; 5.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1890 ; 5.524 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 35 A 331 2 REMARK 3 1 B 35 B 331 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 1188 ; 0.08 ; 0.05 REMARK 3 MEDIUM POSITIONAL 1 A (A): 1149 ; 0.35 ; 0.50 REMARK 3 TIGHT THERMAL 1 A (A**2): 1188 ; 0.56 ; 1.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1149 ; 1.49 ; 2.50 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1001 A 1001 2 REMARK 3 1 B 2001 B 2001 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 A (A): 27 ; 0.12 ; 0.50 REMARK 3 MEDIUM THERMAL 2 A (A**2): 27 ; 4.72 ; 2.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 32 A 333 REMARK 3 ORIGIN FOR THE GROUP (A): 94.9327 8.8336 0.1442 REMARK 3 T TENSOR REMARK 3 T11: 0.0158 T22: 0.0832 REMARK 3 T33: 0.1756 T12: 0.0362 REMARK 3 T13: 0.0057 T23: 0.0188 REMARK 3 L TENSOR REMARK 3 L11: 2.0230 L22: 1.1925 REMARK 3 L33: 5.0175 L12: 0.5350 REMARK 3 L13: -0.3015 L23: 0.2264 REMARK 3 S TENSOR REMARK 3 S11: -0.0679 S12: 0.1167 S13: 0.0065 REMARK 3 S21: -0.0500 S22: 0.1362 S23: 0.1868 REMARK 3 S31: -0.2123 S32: -0.3754 S33: -0.0683 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 32 B 333 REMARK 3 ORIGIN FOR THE GROUP (A): 129.5683 34.2319 10.2150 REMARK 3 T TENSOR REMARK 3 T11: 0.2504 T22: 0.1865 REMARK 3 T33: 0.3127 T12: -0.0709 REMARK 3 T13: 0.0251 T23: 0.0353 REMARK 3 L TENSOR REMARK 3 L11: 5.7788 L22: 1.5035 REMARK 3 L33: 5.4473 L12: 1.2411 REMARK 3 L13: -2.4898 L23: -0.0548 REMARK 3 S TENSOR REMARK 3 S11: 0.1075 S12: -0.3728 S13: 0.5501 REMARK 3 S21: 0.0544 S22: -0.0222 S23: -0.0816 REMARK 3 S31: -0.3606 S32: 0.6687 S33: -0.0853 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2FPC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-JAN-06. REMARK 100 THE DEPOSITION ID IS D_1000036147. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8057 REMARK 200 MONOCHROMATOR : SILICON 111 REMARK 200 OPTICS : DOUBLE CRYSTAL SI[111] REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19104 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 11.80 REMARK 200 R MERGE (I) : 0.12200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.70000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NATIVE STRUCTURE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8M POTASSIUM SODIUM TARTRATE REMARK 280 TETRAHYDRATE, 100MM HEPES-NA, 2MM SECOLOGANIN, PH 7.5, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 295.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 74.30350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 42.89915 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.35633 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 74.30350 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 42.89915 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 40.35633 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 74.30350 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 42.89915 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.35633 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 85.79829 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 80.71267 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 85.79829 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 80.71267 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 85.79829 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 80.71267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 23 REMARK 465 LEU A 24 REMARK 465 ALA A 25 REMARK 465 LEU A 26 REMARK 465 SER A 27 REMARK 465 SER A 28 REMARK 465 PRO A 29 REMARK 465 ILE A 30 REMARK 465 LEU A 31 REMARK 465 ASP A 334 REMARK 465 LYS A 335 REMARK 465 LYS A 336 REMARK 465 GLY A 337 REMARK 465 ASN A 338 REMARK 465 SER A 339 REMARK 465 PHE A 340 REMARK 465 VAL A 341 REMARK 465 SER A 342 REMARK 465 SER A 343 REMARK 465 HIS A 344 REMARK 465 SER B 23 REMARK 465 LEU B 24 REMARK 465 ALA B 25 REMARK 465 LEU B 26 REMARK 465 SER B 27 REMARK 465 SER B 28 REMARK 465 PRO B 29 REMARK 465 ILE B 30 REMARK 465 LEU B 31 REMARK 465 ASP B 334 REMARK 465 LYS B 335 REMARK 465 LYS B 336 REMARK 465 GLY B 337 REMARK 465 ASN B 338 REMARK 465 SER B 339 REMARK 465 PHE B 340 REMARK 465 VAL B 341 REMARK 465 SER B 342 REMARK 465 SER B 343 REMARK 465 HIS B 344 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER B 327 O HOH B 2033 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 180 SD MET A 180 CE 0.433 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 106 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 120 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 193 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 288 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG B 63 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASP B 94 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 40 -132.37 46.64 REMARK 500 PHE A 77 -58.73 -128.80 REMARK 500 ASN A 91 17.42 55.46 REMARK 500 ARG A 103 107.18 -165.48 REMARK 500 HIS A 124 -142.58 45.31 REMARK 500 ASP A 143 27.96 45.41 REMARK 500 TRP A 149 85.17 -153.48 REMARK 500 TYR A 151 -57.15 -126.85 REMARK 500 ASP A 172 -166.22 -106.85 REMARK 500 VAL A 208 67.57 67.53 REMARK 500 SER A 269 62.13 -108.23 REMARK 500 PRO A 302 31.01 -94.44 REMARK 500 PRO B 39 -179.91 -67.90 REMARK 500 SER B 40 -124.02 43.91 REMARK 500 PHE B 77 -66.65 -123.24 REMARK 500 ARG B 103 112.90 -164.93 REMARK 500 ASN B 114 66.45 36.00 REMARK 500 HIS B 124 -153.02 52.23 REMARK 500 ASP B 143 25.12 44.02 REMARK 500 TRP B 149 89.44 -151.11 REMARK 500 TYR B 151 -51.86 -122.31 REMARK 500 ASP B 172 -166.49 -111.14 REMARK 500 ASP B 173 -41.83 -22.47 REMARK 500 LYS B 185 59.59 -119.24 REMARK 500 VAL B 208 72.70 62.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2FP8 RELATED DB: PDB REMARK 900 RELATED ID: 2FP9 RELATED DB: PDB REMARK 900 RELATED ID: 2FPB RELATED DB: PDB DBREF 2FPC A 23 344 UNP P68175 STSY_RAUSE 23 344 DBREF 2FPC B 23 344 UNP P68175 STSY_RAUSE 23 344 SEQRES 1 A 322 SER LEU ALA LEU SER SER PRO ILE LEU LYS GLU ILE LEU SEQRES 2 A 322 ILE GLU ALA PRO SER TYR ALA PRO ASN SER PHE THR PHE SEQRES 3 A 322 ASP SER THR ASN LYS GLY PHE TYR THR SER VAL GLN ASP SEQRES 4 A 322 GLY ARG VAL ILE LYS TYR GLU GLY PRO ASN SER GLY PHE SEQRES 5 A 322 VAL ASP PHE ALA TYR ALA SER PRO TYR TRP ASN LYS ALA SEQRES 6 A 322 PHE CYS GLU ASN SER THR ASP ALA GLU LYS ARG PRO LEU SEQRES 7 A 322 CYS GLY ARG THR TYR ASP ILE SER TYR ASN LEU GLN ASN SEQRES 8 A 322 ASN GLN LEU TYR ILE VAL ASP CYS TYR TYR HIS LEU SER SEQRES 9 A 322 VAL VAL GLY SER GLU GLY GLY HIS ALA THR GLN LEU ALA SEQRES 10 A 322 THR SER VAL ASP GLY VAL PRO PHE LYS TRP LEU TYR ALA SEQRES 11 A 322 VAL THR VAL ASP GLN ARG THR GLY ILE VAL TYR PHE THR SEQRES 12 A 322 ASP VAL SER THR LEU TYR ASP ASP ARG GLY VAL GLN GLN SEQRES 13 A 322 ILE MET ASP THR SER ASP LYS THR GLY ARG LEU ILE LYS SEQRES 14 A 322 TYR ASP PRO SER THR LYS GLU THR THR LEU LEU LEU LYS SEQRES 15 A 322 GLU LEU HIS VAL PRO GLY GLY ALA GLU VAL SER ALA ASP SEQRES 16 A 322 SER SER PHE VAL LEU VAL ALA GLU PHE LEU SER HIS GLN SEQRES 17 A 322 ILE VAL LYS TYR TRP LEU GLU GLY PRO LYS LYS GLY THR SEQRES 18 A 322 ALA GLU VAL LEU VAL LYS ILE PRO ASN PRO GLY ASN ILE SEQRES 19 A 322 LYS ARG ASN ALA ASP GLY HIS PHE TRP VAL SER SER SER SEQRES 20 A 322 GLU GLU LEU ASP GLY ASN MET HIS GLY ARG VAL ASP PRO SEQRES 21 A 322 LYS GLY ILE LYS PHE ASP GLU PHE GLY ASN ILE LEU GLU SEQRES 22 A 322 VAL ILE PRO LEU PRO PRO PRO PHE ALA GLY GLU HIS PHE SEQRES 23 A 322 GLU GLN ILE GLN GLU HIS ASP GLY LEU LEU TYR ILE GLY SEQRES 24 A 322 THR LEU PHE HIS GLY SER VAL GLY ILE LEU VAL TYR ASP SEQRES 25 A 322 LYS LYS GLY ASN SER PHE VAL SER SER HIS SEQRES 1 B 322 SER LEU ALA LEU SER SER PRO ILE LEU LYS GLU ILE LEU SEQRES 2 B 322 ILE GLU ALA PRO SER TYR ALA PRO ASN SER PHE THR PHE SEQRES 3 B 322 ASP SER THR ASN LYS GLY PHE TYR THR SER VAL GLN ASP SEQRES 4 B 322 GLY ARG VAL ILE LYS TYR GLU GLY PRO ASN SER GLY PHE SEQRES 5 B 322 VAL ASP PHE ALA TYR ALA SER PRO TYR TRP ASN LYS ALA SEQRES 6 B 322 PHE CYS GLU ASN SER THR ASP ALA GLU LYS ARG PRO LEU SEQRES 7 B 322 CYS GLY ARG THR TYR ASP ILE SER TYR ASN LEU GLN ASN SEQRES 8 B 322 ASN GLN LEU TYR ILE VAL ASP CYS TYR TYR HIS LEU SER SEQRES 9 B 322 VAL VAL GLY SER GLU GLY GLY HIS ALA THR GLN LEU ALA SEQRES 10 B 322 THR SER VAL ASP GLY VAL PRO PHE LYS TRP LEU TYR ALA SEQRES 11 B 322 VAL THR VAL ASP GLN ARG THR GLY ILE VAL TYR PHE THR SEQRES 12 B 322 ASP VAL SER THR LEU TYR ASP ASP ARG GLY VAL GLN GLN SEQRES 13 B 322 ILE MET ASP THR SER ASP LYS THR GLY ARG LEU ILE LYS SEQRES 14 B 322 TYR ASP PRO SER THR LYS GLU THR THR LEU LEU LEU LYS SEQRES 15 B 322 GLU LEU HIS VAL PRO GLY GLY ALA GLU VAL SER ALA ASP SEQRES 16 B 322 SER SER PHE VAL LEU VAL ALA GLU PHE LEU SER HIS GLN SEQRES 17 B 322 ILE VAL LYS TYR TRP LEU GLU GLY PRO LYS LYS GLY THR SEQRES 18 B 322 ALA GLU VAL LEU VAL LYS ILE PRO ASN PRO GLY ASN ILE SEQRES 19 B 322 LYS ARG ASN ALA ASP GLY HIS PHE TRP VAL SER SER SER SEQRES 20 B 322 GLU GLU LEU ASP GLY ASN MET HIS GLY ARG VAL ASP PRO SEQRES 21 B 322 LYS GLY ILE LYS PHE ASP GLU PHE GLY ASN ILE LEU GLU SEQRES 22 B 322 VAL ILE PRO LEU PRO PRO PRO PHE ALA GLY GLU HIS PHE SEQRES 23 B 322 GLU GLN ILE GLN GLU HIS ASP GLY LEU LEU TYR ILE GLY SEQRES 24 B 322 THR LEU PHE HIS GLY SER VAL GLY ILE LEU VAL TYR ASP SEQRES 25 B 322 LYS LYS GLY ASN SER PHE VAL SER SER HIS HET SCG A1001 27 HET SCG B2001 27 HETNAM SCG SECOLOGANIN HETSYN SCG METHYL (2S,3R,4S)-2-(BETA-D-GLUCOPYRANOSYLOXY)-4-(2- HETSYN 2 SCG OXOETHYL)-3-VINYL-3,4-DIHYDRO-2H-PYRAN-5-CARBOXYLATE FORMUL 3 SCG 2(C17 H24 O10) FORMUL 5 HOH *102(H2 O) HELIX 1 1 ASN A 85 GLU A 90 1 6 HELIX 2 2 ASP A 94 GLU A 96 5 3 HELIX 3 3 LYS A 97 GLY A 102 1 6 HELIX 4 4 GLY A 175 THR A 182 1 8 HELIX 5 5 LEU A 227 HIS A 229 5 3 HELIX 6 6 ASN B 85 GLU B 90 1 6 HELIX 7 7 ASP B 94 GLU B 96 5 3 HELIX 8 8 LYS B 97 GLY B 102 1 6 HELIX 9 9 GLY B 175 SER B 183 1 9 SHEET 1 A 8 GLN A 310 HIS A 314 0 SHEET 2 A 8 LEU A 317 GLY A 321 -1 O TYR A 319 N GLN A 312 SHEET 3 A 8 SER A 327 VAL A 332 -1 O GLY A 329 N ILE A 320 SHEET 4 A 8 GLU A 33 GLU A 37 -1 N ILE A 34 O ILE A 330 SHEET 5 A 8 GLU B 33 GLU B 37 1 O GLU B 33 N GLU A 33 SHEET 6 A 8 SER B 327 VAL B 332 -1 O VAL B 328 N ILE B 36 SHEET 7 A 8 LEU B 317 GLY B 321 -1 N LEU B 318 O LEU B 331 SHEET 8 A 8 GLN B 310 HIS B 314 -1 N GLN B 312 O TYR B 319 SHEET 1 B 5 SER A 45 THR A 47 0 SHEET 2 B 5 PHE A 55 SER A 58 -1 O TYR A 56 N THR A 47 SHEET 3 B 5 ARG A 63 TYR A 67 -1 O TYR A 67 N PHE A 55 SHEET 4 B 5 PHE A 74 TYR A 79 -1 O VAL A 75 N LYS A 66 SHEET 5 B 5 GLY A 133 HIS A 134 1 O GLY A 133 N PHE A 77 SHEET 1 C 4 THR A 104 ASN A 110 0 SHEET 2 C 4 GLN A 115 ASP A 120 -1 O GLN A 115 N ASN A 110 SHEET 3 C 4 HIS A 124 VAL A 128 -1 O SER A 126 N ILE A 118 SHEET 4 C 4 THR A 136 ALA A 139 -1 O THR A 136 N VAL A 127 SHEET 1 D 2 SER A 141 VAL A 142 0 SHEET 2 D 2 VAL A 145 PRO A 146 -1 O VAL A 145 N VAL A 142 SHEET 1 E 4 LEU A 150 VAL A 155 0 SHEET 2 E 4 VAL A 162 ASP A 166 -1 O THR A 165 N TYR A 151 SHEET 3 E 4 GLY A 187 TYR A 192 -1 O TYR A 192 N VAL A 162 SHEET 4 E 4 THR A 199 LEU A 206 -1 O LEU A 206 N GLY A 187 SHEET 1 F 4 PRO A 209 VAL A 214 0 SHEET 2 F 4 PHE A 220 GLU A 225 -1 O LEU A 222 N GLU A 213 SHEET 3 F 4 GLN A 230 TRP A 235 -1 O VAL A 232 N VAL A 223 SHEET 4 F 4 ALA A 244 VAL A 248 -1 O GLU A 245 N LYS A 233 SHEET 1 G 4 PRO A 253 ARG A 258 0 SHEET 2 G 4 PHE A 264 GLU A 271 -1 O TRP A 265 N LYS A 257 SHEET 3 G 4 VAL A 280 PHE A 287 -1 O PHE A 287 N PHE A 264 SHEET 4 G 4 ILE A 293 PRO A 298 -1 O ILE A 297 N GLY A 284 SHEET 1 H 5 PHE B 46 THR B 47 0 SHEET 2 H 5 PHE B 55 SER B 58 -1 O TYR B 56 N THR B 47 SHEET 3 H 5 ARG B 63 TYR B 67 -1 O TYR B 67 N PHE B 55 SHEET 4 H 5 PHE B 74 TYR B 79 -1 O VAL B 75 N LYS B 66 SHEET 5 H 5 GLY B 133 HIS B 134 1 O GLY B 133 N PHE B 77 SHEET 1 I 4 THR B 104 ASN B 110 0 SHEET 2 I 4 GLN B 115 ASP B 120 -1 O GLN B 115 N ASN B 110 SHEET 3 I 4 HIS B 124 VAL B 128 -1 O SER B 126 N ILE B 118 SHEET 4 I 4 THR B 136 ALA B 139 -1 O THR B 136 N VAL B 127 SHEET 1 J 2 SER B 141 VAL B 142 0 SHEET 2 J 2 VAL B 145 PRO B 146 -1 O VAL B 145 N VAL B 142 SHEET 1 K 4 LEU B 150 VAL B 155 0 SHEET 2 K 4 VAL B 162 ASP B 166 -1 O TYR B 163 N THR B 154 SHEET 3 K 4 GLY B 187 TYR B 192 -1 O TYR B 192 N VAL B 162 SHEET 4 K 4 THR B 199 LEU B 206 -1 O LEU B 206 N GLY B 187 SHEET 1 L 4 PRO B 209 VAL B 214 0 SHEET 2 L 4 PHE B 220 GLU B 225 -1 O LEU B 222 N GLU B 213 SHEET 3 L 4 GLN B 230 TRP B 235 -1 O TYR B 234 N VAL B 221 SHEET 4 L 4 ALA B 244 LYS B 249 -1 O GLU B 245 N LYS B 233 SHEET 1 M 4 PRO B 253 ARG B 258 0 SHEET 2 M 4 PHE B 264 GLU B 271 -1 O TRP B 265 N LYS B 257 SHEET 3 M 4 VAL B 280 PHE B 287 -1 O ASP B 281 N GLU B 270 SHEET 4 M 4 ILE B 293 PRO B 298 -1 O LEU B 294 N LYS B 286 SSBOND 1 CYS A 89 CYS A 101 1555 1555 2.05 SSBOND 2 CYS B 89 CYS B 101 1555 1555 2.04 CISPEP 1 PRO A 301 PRO A 302 0 7.47 CISPEP 2 PRO B 301 PRO B 302 0 4.19 CRYST1 148.607 148.607 121.069 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006729 0.003885 0.000000 0.00000 SCALE2 0.000000 0.007770 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008260 0.00000