HEADER LYASE 17-JAN-06 2FQ6 TITLE CYSTATHIONINE BETA-LYASE (CBL) FROM ESCHERICHIA COLI IN COMPLEX WITH TITLE 2 N-HYDRAZINOCARBONYLMETHYL-2-TRIFLUOROMETHYL-BENZAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTATHIONINE BETA-LYASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CBL, BETA-CYSTATHIONASE, CYSTEINE LYASE; COMPND 5 EC: 4.4.1.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: METC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-28A KEYWDS PROTEIN-INHIBITOR COMPLEX, PLP COFACTOR COVALENTLY BOUND TO P3F KEYWDS 2 INHIBITOR, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR M.S.JUNOP REVDAT 5 30-AUG-23 2FQ6 1 REMARK SEQADV REVDAT 4 13-JUL-11 2FQ6 1 VERSN REVDAT 3 24-FEB-09 2FQ6 1 VERSN REVDAT 2 01-MAY-07 2FQ6 1 JRNL REVDAT 1 26-DEC-06 2FQ6 0 JRNL AUTH L.J.EJIM,J.E.BLANCHARD,K.P.KOTEVA,R.SUMERFIELD,N.H.ELOWE, JRNL AUTH 2 J.D.CHECHETTO,E.D.BROWN,M.S.JUNOP,G.D.WRIGHT JRNL TITL INHIBITORS OF BACTERIAL CYSTATHIONINE BETA-LYASE: LEADS FOR JRNL TITL 2 NEW ANTIMICROBIAL AGENTS AND PROBES OF ENZYME STRUCTURE AND JRNL TITL 3 FUNCTION. JRNL REF J.MED.CHEM. V. 50 755 2007 JRNL REFN ISSN 0022-2623 JRNL PMID 17300162 JRNL DOI 10.1021/JM061132R REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 76.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 63627 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3391 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.78 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4665 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE SET COUNT : 281 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6033 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 918 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.85000 REMARK 3 B22 (A**2) : -1.34000 REMARK 3 B33 (A**2) : -1.51000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.136 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.135 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.108 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.864 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6227 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8451 ; 1.682 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 781 ; 6.186 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 272 ;38.564 ;23.971 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1020 ;14.519 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;24.008 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 949 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4720 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3306 ; 0.216 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4282 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 725 ; 0.153 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 220 ; 0.234 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 84 ; 0.182 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3984 ; 1.183 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6214 ; 1.364 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2549 ; 2.663 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2237 ; 3.789 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2FQ6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JAN-06. REMARK 100 THE DEPOSITION ID IS D_1000036177. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-SEP-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : BLUE CONFOCAL MAX-FLUX REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70456 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 76.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.870 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.19 REMARK 200 R MERGE FOR SHELL (I) : 0.30800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1CL1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 0.15M CALCIUM CHLORIDE, REMARK 280 26% PEG 400, PH 7.3, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.72500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.72500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.91500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 76.73500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 29.91500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 76.73500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 75.72500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 29.91500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 76.73500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 75.72500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 29.91500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 76.73500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER, GENERATED BY THE TWO REMARK 300 FOLD AXIS: X,-Y,-Z. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 22740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 75.72500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 736 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 774 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 LYS A 4 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ASP B 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 285 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 15 48.75 -91.70 REMARK 500 SER A 32 -77.38 -97.62 REMARK 500 PHE A 55 -55.91 -140.23 REMARK 500 ILE A 159 -60.85 77.90 REMARK 500 THR A 209 -37.51 -35.08 REMARK 500 LYS A 210 -115.96 -76.47 REMARK 500 ILE A 220 144.37 -172.44 REMARK 500 SER A 308 -156.43 -101.18 REMARK 500 SER A 339 -177.32 69.78 REMARK 500 TRP A 340 -178.14 179.47 REMARK 500 ARG B 15 49.72 -93.13 REMARK 500 SER B 32 -71.92 -103.91 REMARK 500 PHE B 55 -53.83 -138.18 REMARK 500 THR B 61 -168.91 -117.62 REMARK 500 ILE B 159 -55.45 70.01 REMARK 500 LYS B 210 -121.21 -79.83 REMARK 500 ILE B 220 141.52 -172.75 REMARK 500 ASN B 287 79.13 -102.91 REMARK 500 SER B 308 -156.88 -99.20 REMARK 500 SER B 339 179.99 64.14 REMARK 500 TRP B 340 179.56 176.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P3F A 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P3F B 700 DBREF 2FQ6 A 1 395 UNP P06721 METC_ECOLI 1 395 DBREF 2FQ6 B 1 395 UNP P06721 METC_ECOLI 1 395 SEQADV 2FQ6 MET A -19 UNP P06721 CLONING ARTIFACT SEQADV 2FQ6 GLY A -18 UNP P06721 CLONING ARTIFACT SEQADV 2FQ6 SER A -17 UNP P06721 CLONING ARTIFACT SEQADV 2FQ6 SER A -16 UNP P06721 CLONING ARTIFACT SEQADV 2FQ6 HIS A -15 UNP P06721 EXPRESSION TAG SEQADV 2FQ6 HIS A -14 UNP P06721 EXPRESSION TAG SEQADV 2FQ6 HIS A -13 UNP P06721 EXPRESSION TAG SEQADV 2FQ6 HIS A -12 UNP P06721 EXPRESSION TAG SEQADV 2FQ6 HIS A -11 UNP P06721 EXPRESSION TAG SEQADV 2FQ6 HIS A -10 UNP P06721 EXPRESSION TAG SEQADV 2FQ6 SER A -9 UNP P06721 CLONING ARTIFACT SEQADV 2FQ6 SER A -8 UNP P06721 CLONING ARTIFACT SEQADV 2FQ6 GLY A -7 UNP P06721 CLONING ARTIFACT SEQADV 2FQ6 LEU A -6 UNP P06721 CLONING ARTIFACT SEQADV 2FQ6 VAL A -5 UNP P06721 CLONING ARTIFACT SEQADV 2FQ6 PRO A -4 UNP P06721 CLONING ARTIFACT SEQADV 2FQ6 ARG A -3 UNP P06721 CLONING ARTIFACT SEQADV 2FQ6 GLY A -2 UNP P06721 CLONING ARTIFACT SEQADV 2FQ6 SER A -1 UNP P06721 CLONING ARTIFACT SEQADV 2FQ6 HIS A 0 UNP P06721 CLONING ARTIFACT SEQADV 2FQ6 MET B -19 UNP P06721 CLONING ARTIFACT SEQADV 2FQ6 GLY B -18 UNP P06721 CLONING ARTIFACT SEQADV 2FQ6 SER B -17 UNP P06721 CLONING ARTIFACT SEQADV 2FQ6 SER B -16 UNP P06721 CLONING ARTIFACT SEQADV 2FQ6 HIS B -15 UNP P06721 EXPRESSION TAG SEQADV 2FQ6 HIS B -14 UNP P06721 EXPRESSION TAG SEQADV 2FQ6 HIS B -13 UNP P06721 EXPRESSION TAG SEQADV 2FQ6 HIS B -12 UNP P06721 EXPRESSION TAG SEQADV 2FQ6 HIS B -11 UNP P06721 EXPRESSION TAG SEQADV 2FQ6 HIS B -10 UNP P06721 EXPRESSION TAG SEQADV 2FQ6 SER B -9 UNP P06721 CLONING ARTIFACT SEQADV 2FQ6 SER B -8 UNP P06721 CLONING ARTIFACT SEQADV 2FQ6 GLY B -7 UNP P06721 CLONING ARTIFACT SEQADV 2FQ6 LEU B -6 UNP P06721 CLONING ARTIFACT SEQADV 2FQ6 VAL B -5 UNP P06721 CLONING ARTIFACT SEQADV 2FQ6 PRO B -4 UNP P06721 CLONING ARTIFACT SEQADV 2FQ6 ARG B -3 UNP P06721 CLONING ARTIFACT SEQADV 2FQ6 GLY B -2 UNP P06721 CLONING ARTIFACT SEQADV 2FQ6 SER B -1 UNP P06721 CLONING ARTIFACT SEQADV 2FQ6 HIS B 0 UNP P06721 CLONING ARTIFACT SEQRES 1 A 415 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 415 LEU VAL PRO ARG GLY SER HIS MET ALA ASP LYS LYS LEU SEQRES 3 A 415 ASP THR GLN LEU VAL ASN ALA GLY ARG SER LYS LYS TYR SEQRES 4 A 415 THR LEU GLY ALA VAL ASN SER VAL ILE GLN ARG ALA SER SEQRES 5 A 415 SER LEU VAL PHE ASP SER VAL GLU ALA LYS LYS HIS ALA SEQRES 6 A 415 THR ARG ASN ARG ALA ASN GLY GLU LEU PHE TYR GLY ARG SEQRES 7 A 415 ARG GLY THR LEU THR HIS PHE SER LEU GLN GLN ALA MET SEQRES 8 A 415 CYS GLU LEU GLU GLY GLY ALA GLY CYS VAL LEU PHE PRO SEQRES 9 A 415 CYS GLY ALA ALA ALA VAL ALA ASN SER ILE LEU ALA PHE SEQRES 10 A 415 ILE GLU GLN GLY ASP HIS VAL LEU MET THR ASN THR ALA SEQRES 11 A 415 TYR GLU PRO SER GLN ASP PHE CYS SER LYS ILE LEU SER SEQRES 12 A 415 LYS LEU GLY VAL THR THR SER TRP PHE ASP PRO LEU ILE SEQRES 13 A 415 GLY ALA ASP ILE VAL LYS HIS LEU GLN PRO ASN THR LYS SEQRES 14 A 415 ILE VAL PHE LEU GLU SER PRO GLY SER ILE THR MET GLU SEQRES 15 A 415 VAL HIS ASP VAL PRO ALA ILE VAL ALA ALA VAL ARG SER SEQRES 16 A 415 VAL VAL PRO ASP ALA ILE ILE MET ILE ASP ASN THR TRP SEQRES 17 A 415 ALA ALA GLY VAL LEU PHE LYS ALA LEU ASP PHE GLY ILE SEQRES 18 A 415 ASP VAL SER ILE GLN ALA ALA THR LYS TYR LEU VAL GLY SEQRES 19 A 415 HIS SER ASP ALA MET ILE GLY THR ALA VAL CYS ASN ALA SEQRES 20 A 415 ARG CYS TRP GLU GLN LEU ARG GLU ASN ALA TYR LEU MET SEQRES 21 A 415 GLY GLN MET VAL ASP ALA ASP THR ALA TYR ILE THR SER SEQRES 22 A 415 ARG GLY LEU ARG THR LEU GLY VAL ARG LEU ARG GLN HIS SEQRES 23 A 415 HIS GLU SER SER LEU LYS VAL ALA GLU TRP LEU ALA GLU SEQRES 24 A 415 HIS PRO GLN VAL ALA ARG VAL ASN HIS PRO ALA LEU PRO SEQRES 25 A 415 GLY SER LYS GLY HIS GLU PHE TRP LYS ARG ASP PHE THR SEQRES 26 A 415 GLY SER SER GLY LEU PHE SER PHE VAL LEU LYS LYS LYS SEQRES 27 A 415 LEU ASN ASN GLU GLU LEU ALA ASN TYR LEU ASP ASN PHE SEQRES 28 A 415 SER LEU PHE SER MET ALA TYR SER TRP GLY GLY TYR GLU SEQRES 29 A 415 SER LEU ILE LEU ALA ASN GLN PRO GLU HIS ILE ALA ALA SEQRES 30 A 415 ILE ARG PRO GLN GLY GLU ILE ASP PHE SER GLY THR LEU SEQRES 31 A 415 ILE ARG LEU HIS ILE GLY LEU GLU ASP VAL ASP ASP LEU SEQRES 32 A 415 ILE ALA ASP LEU ASP ALA GLY PHE ALA ARG ILE VAL SEQRES 1 B 415 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 415 LEU VAL PRO ARG GLY SER HIS MET ALA ASP LYS LYS LEU SEQRES 3 B 415 ASP THR GLN LEU VAL ASN ALA GLY ARG SER LYS LYS TYR SEQRES 4 B 415 THR LEU GLY ALA VAL ASN SER VAL ILE GLN ARG ALA SER SEQRES 5 B 415 SER LEU VAL PHE ASP SER VAL GLU ALA LYS LYS HIS ALA SEQRES 6 B 415 THR ARG ASN ARG ALA ASN GLY GLU LEU PHE TYR GLY ARG SEQRES 7 B 415 ARG GLY THR LEU THR HIS PHE SER LEU GLN GLN ALA MET SEQRES 8 B 415 CYS GLU LEU GLU GLY GLY ALA GLY CYS VAL LEU PHE PRO SEQRES 9 B 415 CYS GLY ALA ALA ALA VAL ALA ASN SER ILE LEU ALA PHE SEQRES 10 B 415 ILE GLU GLN GLY ASP HIS VAL LEU MET THR ASN THR ALA SEQRES 11 B 415 TYR GLU PRO SER GLN ASP PHE CYS SER LYS ILE LEU SER SEQRES 12 B 415 LYS LEU GLY VAL THR THR SER TRP PHE ASP PRO LEU ILE SEQRES 13 B 415 GLY ALA ASP ILE VAL LYS HIS LEU GLN PRO ASN THR LYS SEQRES 14 B 415 ILE VAL PHE LEU GLU SER PRO GLY SER ILE THR MET GLU SEQRES 15 B 415 VAL HIS ASP VAL PRO ALA ILE VAL ALA ALA VAL ARG SER SEQRES 16 B 415 VAL VAL PRO ASP ALA ILE ILE MET ILE ASP ASN THR TRP SEQRES 17 B 415 ALA ALA GLY VAL LEU PHE LYS ALA LEU ASP PHE GLY ILE SEQRES 18 B 415 ASP VAL SER ILE GLN ALA ALA THR LYS TYR LEU VAL GLY SEQRES 19 B 415 HIS SER ASP ALA MET ILE GLY THR ALA VAL CYS ASN ALA SEQRES 20 B 415 ARG CYS TRP GLU GLN LEU ARG GLU ASN ALA TYR LEU MET SEQRES 21 B 415 GLY GLN MET VAL ASP ALA ASP THR ALA TYR ILE THR SER SEQRES 22 B 415 ARG GLY LEU ARG THR LEU GLY VAL ARG LEU ARG GLN HIS SEQRES 23 B 415 HIS GLU SER SER LEU LYS VAL ALA GLU TRP LEU ALA GLU SEQRES 24 B 415 HIS PRO GLN VAL ALA ARG VAL ASN HIS PRO ALA LEU PRO SEQRES 25 B 415 GLY SER LYS GLY HIS GLU PHE TRP LYS ARG ASP PHE THR SEQRES 26 B 415 GLY SER SER GLY LEU PHE SER PHE VAL LEU LYS LYS LYS SEQRES 27 B 415 LEU ASN ASN GLU GLU LEU ALA ASN TYR LEU ASP ASN PHE SEQRES 28 B 415 SER LEU PHE SER MET ALA TYR SER TRP GLY GLY TYR GLU SEQRES 29 B 415 SER LEU ILE LEU ALA ASN GLN PRO GLU HIS ILE ALA ALA SEQRES 30 B 415 ILE ARG PRO GLN GLY GLU ILE ASP PHE SER GLY THR LEU SEQRES 31 B 415 ILE ARG LEU HIS ILE GLY LEU GLU ASP VAL ASP ASP LEU SEQRES 32 B 415 ILE ALA ASP LEU ASP ALA GLY PHE ALA ARG ILE VAL HET P3F A 700 33 HET P3F B 700 33 HETNAM P3F PHOSPHORIC ACID MONO-(5-HYDROXY-6-METHYL-4-{[2-(2- HETNAM 2 P3F TRIFLUOROMETHYL-BENZOYLAMINO)-ACETYL]- HETNAM 3 P3F HYDRAZONOMETHYL}-PYRIDIN-3-YLMETHYL)ESTER FORMUL 3 P3F 2(C18 H18 F3 N4 O7 P) FORMUL 5 HOH *918(H2 O) HELIX 1 1 LYS A 5 ALA A 13 1 9 HELIX 2 2 SER A 16 LEU A 21 1 6 HELIX 3 3 SER A 38 ASN A 48 1 11 HELIX 4 4 THR A 61 GLY A 76 1 16 HELIX 5 5 CYS A 85 ALA A 96 1 12 HELIX 6 6 TYR A 111 ILE A 121 1 11 HELIX 7 7 LEU A 122 GLY A 126 5 5 HELIX 8 8 ILE A 136 LEU A 144 5 9 HELIX 9 9 ASP A 165 VAL A 177 1 13 HELIX 10 10 LYS A 195 GLY A 200 5 6 HELIX 11 11 CYS A 229 MET A 240 1 12 HELIX 12 12 ASP A 245 GLU A 279 1 35 HELIX 13 13 GLY A 296 PHE A 304 1 9 HELIX 14 14 ASN A 320 ASP A 329 1 10 HELIX 15 15 GLN A 351 ALA A 357 1 7 HELIX 16 16 ASP A 379 ARG A 393 1 15 HELIX 17 17 LYS B 5 ALA B 13 1 9 HELIX 18 18 SER B 16 LEU B 21 1 6 HELIX 19 19 SER B 38 ASN B 48 1 11 HELIX 20 20 THR B 61 GLY B 76 1 16 HELIX 21 21 CYS B 85 ILE B 98 1 14 HELIX 22 22 TYR B 111 ILE B 121 1 11 HELIX 23 23 LEU B 122 GLY B 126 5 5 HELIX 24 24 ILE B 136 LEU B 144 5 9 HELIX 25 25 ASP B 165 VAL B 177 1 13 HELIX 26 26 LYS B 195 GLY B 200 5 6 HELIX 27 27 ASN B 226 MET B 240 1 15 HELIX 28 28 ASP B 245 ARG B 257 1 13 HELIX 29 29 THR B 258 GLU B 279 1 22 HELIX 30 30 GLY B 296 PHE B 304 1 9 HELIX 31 31 ASN B 320 ASN B 330 1 11 HELIX 32 32 GLN B 351 ALA B 357 1 7 HELIX 33 33 ASP B 379 ILE B 394 1 16 SHEET 1 A 7 GLY A 79 PHE A 83 0 SHEET 2 A 7 GLY A 221 CYS A 225 -1 O ALA A 223 N VAL A 81 SHEET 3 A 7 VAL A 203 ALA A 207 -1 N SER A 204 O VAL A 224 SHEET 4 A 7 ILE A 181 ASP A 185 1 N ILE A 184 O ILE A 205 SHEET 5 A 7 THR A 148 GLU A 154 1 N LEU A 153 O MET A 183 SHEET 6 A 7 HIS A 103 THR A 107 1 N LEU A 105 O PHE A 152 SHEET 7 A 7 THR A 128 PHE A 132 1 O THR A 128 N VAL A 104 SHEET 1 B 5 VAL A 283 ASN A 287 0 SHEET 2 B 5 LEU A 310 LEU A 315 -1 O SER A 312 N ASN A 287 SHEET 3 B 5 LEU A 370 HIS A 374 -1 O ILE A 371 N PHE A 313 SHEET 4 B 5 LEU A 346 ASN A 350 -1 N LEU A 348 O ARG A 372 SHEET 5 B 5 SER A 335 MET A 336 1 N SER A 335 O ILE A 347 SHEET 1 C 7 GLY B 79 PHE B 83 0 SHEET 2 C 7 GLY B 221 CYS B 225 -1 O ALA B 223 N VAL B 81 SHEET 3 C 7 VAL B 203 ALA B 207 -1 N SER B 204 O VAL B 224 SHEET 4 C 7 ILE B 181 ASP B 185 1 N ILE B 184 O ILE B 205 SHEET 5 C 7 THR B 148 GLU B 154 1 N LYS B 149 O ILE B 181 SHEET 6 C 7 HIS B 103 THR B 107 1 N LEU B 105 O PHE B 152 SHEET 7 C 7 THR B 128 PHE B 132 1 O THR B 128 N VAL B 104 SHEET 1 D 4 VAL B 283 ASN B 287 0 SHEET 2 D 4 LEU B 310 LEU B 315 -1 O SER B 312 N ASN B 287 SHEET 3 D 4 LEU B 370 HIS B 374 -1 O ILE B 371 N PHE B 313 SHEET 4 D 4 LEU B 346 ASN B 350 -1 N ASN B 350 O LEU B 370 CISPEP 1 SER A 155 PRO A 156 0 -6.95 CISPEP 2 SER B 155 PRO B 156 0 -9.54 SITE 1 AC1 23 PHE A 55 TYR A 56 ARG A 58 CYS A 85 SITE 2 AC1 23 GLY A 86 ALA A 87 TYR A 111 PRO A 113 SITE 3 AC1 23 GLU A 154 ASP A 185 ALA A 207 THR A 209 SITE 4 AC1 23 LYS A 210 MET A 219 TYR A 238 TYR A 338 SITE 5 AC1 23 SER A 339 TRP A 340 ARG A 372 HOH A 984 SITE 6 AC1 23 HOH A 986 HOH A1085 HOH A1126 SITE 1 AC2 24 PHE B 55 TYR B 56 ARG B 58 CYS B 85 SITE 2 AC2 24 GLY B 86 ALA B 87 TYR B 111 PRO B 113 SITE 3 AC2 24 GLU B 154 ASP B 185 ALA B 207 THR B 209 SITE 4 AC2 24 LYS B 210 MET B 219 TYR B 238 TYR B 338 SITE 5 AC2 24 SER B 339 TRP B 340 ARG B 372 HOH B 743 SITE 6 AC2 24 HOH B 818 HOH B 875 HOH B 992 HOH B1165 CRYST1 59.830 153.470 151.450 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016714 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006516 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006603 0.00000