HEADER OXIDOREDUCTASE 19-JAN-06 2FR8 TITLE STRUCTURE OF TRANSHYDROGENASE (DI.R127A.NAD+)2(DIII.NADP+)1 ASYMMETRIC TITLE 2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD(P) TRANSHYDROGENASE SUBUNIT ALPHA PART 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PYRIDINE NUCLEOTIDE TRANSHYDROGENASE SUBUNIT ALPHA 1, COMPND 5 NICOTINAMIDE NUCLEOTIDE TRANSHYDROGENASE SUBUNIT ALPHA 1, PROTON- COMPND 6 TRANSLOCATING TRANSHYDROGENASE COMPONENT 1, DI; COMPND 7 EC: 1.6.1.2; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: NAD(P) TRANSHYDROGENASE SUBUNIT BETA; COMPND 12 CHAIN: C; COMPND 13 FRAGMENT: DIII DOMAIN TRANSHYDROGENASE; COMPND 14 SYNONYM: PYRIDINE NUCLEOTIDE TRANSHYDROGENASE SUBUNIT BETA, COMPND 15 NICOTINAMIDE NUCLEOTIDE TRANSHYDROGENASE SUBUNIT BETA, PROTON- COMPND 16 TRANSLOCATING TRANSHYDROGENASE NADPH, -BINDING COMPONENT, DIII; COMPND 17 EC: 1.6.1.2; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOSPIRILLUM RUBRUM; SOURCE 3 ORGANISM_TAXID: 1085; SOURCE 4 GENE: PNTAA, NNTA1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: C600; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGVB3; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: RHODOSPIRILLUM RUBRUM; SOURCE 12 ORGANISM_TAXID: 1085; SOURCE 13 GENE: PNTB, NNTB; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PET; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PNIC2 KEYWDS NAD(P) TRANSHYDROGENASE SUBUNITS, NAD+, NADP+, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.H.BRONDIJK,G.I.VAN BOXEL,O.C.MATHER,P.G.QUIRK,S.A.WHITE,J.B.JACKSON REVDAT 5 30-AUG-23 2FR8 1 REMARK REVDAT 4 20-OCT-21 2FR8 1 REMARK SEQADV REVDAT 3 24-FEB-09 2FR8 1 VERSN REVDAT 2 23-MAY-06 2FR8 1 JRNL REVDAT 1 28-FEB-06 2FR8 0 JRNL AUTH T.H.BRONDIJK,G.I.VAN BOXEL,O.C.MATHER,P.G.QUIRK,S.A.WHITE, JRNL AUTH 2 J.B.JACKSON JRNL TITL THE ROLE OF INVARIANT AMINO ACID RESIDUES AT THE HYDRIDE JRNL TITL 2 TRANSFER SITE OF PROTON-TRANSLOCATING TRANSHYDROGENASE. JRNL REF J.BIOL.CHEM. V. 281 13345 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16533815 JRNL DOI 10.1074/JBC.M513230200 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 25781 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.253 REMARK 3 R VALUE (WORKING SET) : 0.251 REMARK 3 FREE R VALUE : 0.304 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1381 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1699 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.3560 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.3900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6468 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 75 REMARK 3 SOLVENT ATOMS : 56 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.29 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.51000 REMARK 3 B22 (A**2) : -1.53000 REMARK 3 B33 (A**2) : -0.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.409 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.345 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 33.928 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.907 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.855 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6640 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 6378 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9021 ; 1.163 ; 1.998 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14834 ; 0.849 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 874 ; 5.213 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 219 ;42.773 ;24.932 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1153 ;14.449 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;14.477 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1104 ; 0.058 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7260 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1145 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1542 ; 0.180 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 6907 ; 0.177 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3248 ; 0.161 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 3614 ; 0.083 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 315 ; 0.174 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): 8 ; 0.061 ; 0.500 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 22 ; 0.145 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 97 ; 0.184 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.153 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4489 ; 0.394 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1787 ; 0.025 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7044 ; 0.681 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2363 ; 0.338 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1977 ; 0.560 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 371 REMARK 3 RESIDUE RANGE : B 1 B 375 REMARK 3 RESIDUE RANGE : C 30 C 203 REMARK 3 ORIGIN FOR THE GROUP (A): 2.8260 68.1450 24.2100 REMARK 3 T TENSOR REMARK 3 T11: -0.0829 T22: -0.0701 REMARK 3 T33: 0.0584 T12: 0.0159 REMARK 3 T13: 0.0291 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.1275 L22: 0.3639 REMARK 3 L33: 0.2164 L12: 0.1880 REMARK 3 L13: 0.0554 L23: 0.0878 REMARK 3 S TENSOR REMARK 3 S11: 0.0103 S12: 0.0106 S13: 0.0320 REMARK 3 S21: 0.0322 S22: -0.0045 S23: 0.0568 REMARK 3 S31: -0.0025 S32: -0.0044 S33: -0.0057 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2FR8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-FEB-06. REMARK 100 THE DEPOSITION ID IS D_1000036215. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27222 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 47.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : 0.11700 REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.44200 REMARK 200 R SYM FOR SHELL (I) : 0.44200 REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: PDB ENTRY 1HZZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16-20% 8K-PEG, 20-150 MM (NH4)2SO4, REMARK 280 100 MM MES, PH 6.0 AND 10% GLYCEROL IN THE PRESENCE OF 50 MM NAD+ REMARK 280 AND 5 MM NADP+, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.56500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 97.57000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.16500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 97.57000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.56500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.16500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 221 REMARK 465 ASP A 222 REMARK 465 ASP A 223 REMARK 465 GLU A 224 REMARK 465 ALA A 225 REMARK 465 MET A 226 REMARK 465 LYS A 227 REMARK 465 THR A 228 REMARK 465 ALA A 229 REMARK 465 GLU A 230 REMARK 465 THR A 231 REMARK 465 ALA A 232 REMARK 465 GLY A 233 REMARK 465 GLY A 234 REMARK 465 TYR A 235 REMARK 465 ALA A 236 REMARK 465 LYS A 237 REMARK 465 GLU A 238 REMARK 465 MET A 239 REMARK 465 GLY A 240 REMARK 465 GLU A 241 REMARK 465 GLU A 242 REMARK 465 PHE A 243 REMARK 465 ARG A 244 REMARK 465 LYS A 245 REMARK 465 THR A 380 REMARK 465 GLY A 381 REMARK 465 GLN A 382 REMARK 465 GLY A 383 REMARK 465 ALA A 384 REMARK 465 ASP B 222 REMARK 465 ASP B 223 REMARK 465 GLU B 224 REMARK 465 ALA B 225 REMARK 465 MET B 226 REMARK 465 LYS B 227 REMARK 465 THR B 228 REMARK 465 ALA B 229 REMARK 465 GLU B 230 REMARK 465 THR B 231 REMARK 465 ALA B 232 REMARK 465 GLY B 233 REMARK 465 GLY B 234 REMARK 465 TYR B 235 REMARK 465 ALA B 236 REMARK 465 LYS B 237 REMARK 465 GLU B 238 REMARK 465 MET B 239 REMARK 465 GLY B 240 REMARK 465 GLU B 241 REMARK 465 GLU B 242 REMARK 465 PHE B 243 REMARK 465 ARG B 244 REMARK 465 LYS B 245 REMARK 465 HIS B 376 REMARK 465 PRO B 377 REMARK 465 ALA B 378 REMARK 465 LEU B 379 REMARK 465 THR B 380 REMARK 465 GLY B 381 REMARK 465 GLN B 382 REMARK 465 GLY B 383 REMARK 465 ALA B 384 REMARK 465 MET C 1 REMARK 465 ASN C 2 REMARK 465 ARG C 3 REMARK 465 SER C 4 REMARK 465 ILE C 5 REMARK 465 PHE C 6 REMARK 465 ASN C 7 REMARK 465 VAL C 8 REMARK 465 ILE C 9 REMARK 465 LEU C 10 REMARK 465 GLY C 11 REMARK 465 GLY C 12 REMARK 465 PHE C 13 REMARK 465 GLY C 14 REMARK 465 SER C 15 REMARK 465 GLU C 16 REMARK 465 GLY C 17 REMARK 465 GLY C 18 REMARK 465 VAL C 19 REMARK 465 ALA C 20 REMARK 465 ALA C 21 REMARK 465 ALA C 22 REMARK 465 GLY C 23 REMARK 465 GLY C 24 REMARK 465 ALA C 25 REMARK 465 ALA C 26 REMARK 465 GLY C 27 REMARK 465 ASP C 28 REMARK 465 ARG C 29 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 17 41.35 -84.39 REMARK 500 VAL A 74 -71.99 -85.09 REMARK 500 ASP A 348 -165.69 -73.17 REMARK 500 PRO A 377 72.12 -36.27 REMARK 500 ALA A 378 48.68 -163.52 REMARK 500 GLN B 63 27.44 -77.27 REMARK 500 ALA B 64 -28.90 -148.85 REMARK 500 CYS B 98 -175.99 -172.55 REMARK 500 ASN B 105 64.57 -115.59 REMARK 500 ALA B 206 20.05 -74.23 REMARK 500 PRO B 268 -83.97 -32.39 REMARK 500 ASN B 322 70.60 49.88 REMARK 500 ASP B 348 137.95 -175.82 REMARK 500 LYS B 349 -51.46 -138.55 REMARK 500 THR B 351 85.25 -164.92 REMARK 500 LYS B 352 37.52 -168.80 REMARK 500 ASN C 45 54.40 -96.66 REMARK 500 VAL C 87 31.06 -99.35 REMARK 500 ASN C 131 -74.38 -148.20 REMARK 500 THR C 140 31.95 -145.00 REMARK 500 ASP C 141 89.62 -157.91 REMARK 500 LYS C 164 127.19 -171.82 REMARK 500 PHE C 180 49.51 -103.46 REMARK 500 LEU C 187 79.14 -113.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS B 349 ASP B 350 134.23 REMARK 500 ASP B 350 THR B 351 149.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 LIGAND REMARK 600 NAD 500 IS ASSOCIATED WITH TRANSHYDROGENASE DI CHAIN A. REMARK 600 NAP 400 IS ASSOCIATED WITH TRANSHYDROGENASE DIII CHAIN C. REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAD A 500 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP C 400 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HZZ RELATED DB: PDB REMARK 900 RELATED ID: 1NM5 RELATED DB: PDB REMARK 900 RELATED ID: 1U2D RELATED DB: PDB REMARK 900 RELATED ID: 1U2G RELATED DB: PDB REMARK 900 RELATED ID: 1U28 RELATED DB: PDB REMARK 900 RELATED ID: 1XLT RELATED DB: PDB REMARK 900 RELATED ID: 2FRD RELATED DB: PDB DBREF 2FR8 A 1 384 UNP Q60164 PNTAA_RHORU 1 384 DBREF 2FR8 B 1 384 UNP Q60164 PNTAA_RHORU 1 384 DBREF 2FR8 C 1 203 UNP Q59765 PNTB_RHORU 262 464 SEQADV 2FR8 ALA A 127 UNP Q60164 ARG 127 ENGINEERED MUTATION SEQADV 2FR8 ALA B 127 UNP Q60164 ARG 127 ENGINEERED MUTATION SEQRES 1 A 384 MET LYS ILE ALA ILE PRO LYS GLU ARG ARG PRO GLY GLU SEQRES 2 A 384 ASP ARG VAL ALA ILE SER PRO GLU VAL VAL LYS LYS LEU SEQRES 3 A 384 VAL GLY LEU GLY PHE GLU VAL ILE VAL GLU GLN GLY ALA SEQRES 4 A 384 GLY VAL GLY ALA SER ILE THR ASP ASP ALA LEU THR ALA SEQRES 5 A 384 ALA GLY ALA THR ILE ALA SER THR ALA ALA GLN ALA LEU SEQRES 6 A 384 SER GLN ALA ASP VAL VAL TRP LYS VAL GLN ARG PRO MET SEQRES 7 A 384 THR ALA GLU GLU GLY THR ASP GLU VAL ALA LEU ILE LYS SEQRES 8 A 384 GLU GLY ALA VAL LEU MET CYS HIS LEU GLY ALA LEU THR SEQRES 9 A 384 ASN ARG PRO VAL VAL GLU ALA LEU THR LYS ARG LYS ILE SEQRES 10 A 384 THR ALA TYR ALA MET GLU LEU MET PRO ALA ILE SER ARG SEQRES 11 A 384 ALA GLN SER MET ASP ILE LEU SER SER GLN SER ASN LEU SEQRES 12 A 384 ALA GLY TYR ARG ALA VAL ILE ASP GLY ALA TYR GLU PHE SEQRES 13 A 384 ALA ARG ALA PHE PRO MET MET MET THR ALA ALA GLY THR SEQRES 14 A 384 VAL PRO PRO ALA ARG VAL LEU VAL PHE GLY VAL GLY VAL SEQRES 15 A 384 ALA GLY LEU GLN ALA ILE ALA THR ALA LYS ARG LEU GLY SEQRES 16 A 384 ALA VAL VAL MET ALA THR ASP VAL ARG ALA ALA THR LYS SEQRES 17 A 384 GLU GLN VAL GLU SER LEU GLY GLY LYS PHE ILE THR VAL SEQRES 18 A 384 ASP ASP GLU ALA MET LYS THR ALA GLU THR ALA GLY GLY SEQRES 19 A 384 TYR ALA LYS GLU MET GLY GLU GLU PHE ARG LYS LYS GLN SEQRES 20 A 384 ALA GLU ALA VAL LEU LYS GLU LEU VAL LYS THR ASP ILE SEQRES 21 A 384 ALA ILE THR THR ALA LEU ILE PRO GLY LYS PRO ALA PRO SEQRES 22 A 384 VAL LEU ILE THR GLU GLU MET VAL THR LYS MET LYS PRO SEQRES 23 A 384 GLY SER VAL ILE ILE ASP LEU ALA VAL GLU ALA GLY GLY SEQRES 24 A 384 ASN CYS PRO LEU SER GLU PRO GLY LYS ILE VAL VAL LYS SEQRES 25 A 384 HIS GLY VAL LYS ILE VAL GLY HIS THR ASN VAL PRO SER SEQRES 26 A 384 ARG VAL ALA ALA ASP ALA SER PRO LEU PHE ALA LYS ASN SEQRES 27 A 384 LEU LEU ASN PHE LEU THR PRO HIS VAL ASP LYS ASP THR SEQRES 28 A 384 LYS THR LEU VAL MET LYS LEU GLU ASP GLU THR VAL SER SEQRES 29 A 384 GLY THR CYS VAL THR ARG ASP GLY ALA ILE VAL HIS PRO SEQRES 30 A 384 ALA LEU THR GLY GLN GLY ALA SEQRES 1 B 384 MET LYS ILE ALA ILE PRO LYS GLU ARG ARG PRO GLY GLU SEQRES 2 B 384 ASP ARG VAL ALA ILE SER PRO GLU VAL VAL LYS LYS LEU SEQRES 3 B 384 VAL GLY LEU GLY PHE GLU VAL ILE VAL GLU GLN GLY ALA SEQRES 4 B 384 GLY VAL GLY ALA SER ILE THR ASP ASP ALA LEU THR ALA SEQRES 5 B 384 ALA GLY ALA THR ILE ALA SER THR ALA ALA GLN ALA LEU SEQRES 6 B 384 SER GLN ALA ASP VAL VAL TRP LYS VAL GLN ARG PRO MET SEQRES 7 B 384 THR ALA GLU GLU GLY THR ASP GLU VAL ALA LEU ILE LYS SEQRES 8 B 384 GLU GLY ALA VAL LEU MET CYS HIS LEU GLY ALA LEU THR SEQRES 9 B 384 ASN ARG PRO VAL VAL GLU ALA LEU THR LYS ARG LYS ILE SEQRES 10 B 384 THR ALA TYR ALA MET GLU LEU MET PRO ALA ILE SER ARG SEQRES 11 B 384 ALA GLN SER MET ASP ILE LEU SER SER GLN SER ASN LEU SEQRES 12 B 384 ALA GLY TYR ARG ALA VAL ILE ASP GLY ALA TYR GLU PHE SEQRES 13 B 384 ALA ARG ALA PHE PRO MET MET MET THR ALA ALA GLY THR SEQRES 14 B 384 VAL PRO PRO ALA ARG VAL LEU VAL PHE GLY VAL GLY VAL SEQRES 15 B 384 ALA GLY LEU GLN ALA ILE ALA THR ALA LYS ARG LEU GLY SEQRES 16 B 384 ALA VAL VAL MET ALA THR ASP VAL ARG ALA ALA THR LYS SEQRES 17 B 384 GLU GLN VAL GLU SER LEU GLY GLY LYS PHE ILE THR VAL SEQRES 18 B 384 ASP ASP GLU ALA MET LYS THR ALA GLU THR ALA GLY GLY SEQRES 19 B 384 TYR ALA LYS GLU MET GLY GLU GLU PHE ARG LYS LYS GLN SEQRES 20 B 384 ALA GLU ALA VAL LEU LYS GLU LEU VAL LYS THR ASP ILE SEQRES 21 B 384 ALA ILE THR THR ALA LEU ILE PRO GLY LYS PRO ALA PRO SEQRES 22 B 384 VAL LEU ILE THR GLU GLU MET VAL THR LYS MET LYS PRO SEQRES 23 B 384 GLY SER VAL ILE ILE ASP LEU ALA VAL GLU ALA GLY GLY SEQRES 24 B 384 ASN CYS PRO LEU SER GLU PRO GLY LYS ILE VAL VAL LYS SEQRES 25 B 384 HIS GLY VAL LYS ILE VAL GLY HIS THR ASN VAL PRO SER SEQRES 26 B 384 ARG VAL ALA ALA ASP ALA SER PRO LEU PHE ALA LYS ASN SEQRES 27 B 384 LEU LEU ASN PHE LEU THR PRO HIS VAL ASP LYS ASP THR SEQRES 28 B 384 LYS THR LEU VAL MET LYS LEU GLU ASP GLU THR VAL SER SEQRES 29 B 384 GLY THR CYS VAL THR ARG ASP GLY ALA ILE VAL HIS PRO SEQRES 30 B 384 ALA LEU THR GLY GLN GLY ALA SEQRES 1 C 203 MET ASN ARG SER ILE PHE ASN VAL ILE LEU GLY GLY PHE SEQRES 2 C 203 GLY SER GLU GLY GLY VAL ALA ALA ALA GLY GLY ALA ALA SEQRES 3 C 203 GLY ASP ARG SER VAL LYS ALA GLY SER ALA GLU ASP ALA SEQRES 4 C 203 ALA PHE ILE MET LYS ASN ALA SER LYS VAL ILE ILE VAL SEQRES 5 C 203 PRO GLY TYR GLY MET ALA VAL ALA GLN ALA GLN HIS ALA SEQRES 6 C 203 LEU ARG GLU MET ALA ASP VAL LEU LYS LYS GLU GLY VAL SEQRES 7 C 203 GLU VAL SER TYR ALA ILE HIS PRO VAL ALA GLY ARG MET SEQRES 8 C 203 PRO GLY HIS MET ASN VAL LEU LEU ALA GLU ALA ASN VAL SEQRES 9 C 203 PRO TYR ASP GLU VAL PHE GLU LEU GLU GLU ILE ASN SER SEQRES 10 C 203 SER PHE GLN THR ALA ASP VAL ALA PHE VAL ILE GLY ALA SEQRES 11 C 203 ASN ASP VAL THR ASN PRO ALA ALA LYS THR ASP PRO SER SEQRES 12 C 203 SER PRO ILE TYR GLY MET PRO ILE LEU ASP VAL GLU LYS SEQRES 13 C 203 ALA GLY THR VAL LEU PHE ILE LYS ARG SER MET ALA SER SEQRES 14 C 203 GLY TYR ALA GLY VAL GLU ASN GLU LEU PHE PHE ARG ASN SEQRES 15 C 203 ASN THR MET MET LEU PHE GLY ASP ALA LYS LYS MET THR SEQRES 16 C 203 GLU GLN ILE VAL GLN ALA MET ASN HET NAD A 500 27 HET NAP C 400 48 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 4 NAD C21 H27 N7 O14 P2 FORMUL 5 NAP C21 H28 N7 O17 P3 FORMUL 6 HOH *56(H2 O) HELIX 1 1 SER A 19 GLY A 30 1 12 HELIX 2 2 THR A 46 GLY A 54 1 9 HELIX 3 3 THR A 60 GLN A 67 1 8 HELIX 4 4 THR A 79 GLY A 83 5 5 HELIX 5 5 GLU A 86 ILE A 90 5 5 HELIX 6 6 GLY A 101 THR A 104 5 4 HELIX 7 7 ASN A 105 ARG A 115 1 11 HELIX 8 8 GLU A 123 MET A 125 5 3 HELIX 9 9 ASP A 135 PHE A 156 1 22 HELIX 10 10 GLY A 181 GLY A 195 1 15 HELIX 11 11 ALA A 206 LEU A 214 1 9 HELIX 12 12 ALA A 248 VAL A 256 1 9 HELIX 13 13 THR A 277 LYS A 283 1 7 HELIX 14 14 ALA A 294 GLY A 298 5 5 HELIX 15 15 VAL A 323 ARG A 326 5 4 HELIX 16 16 VAL A 327 THR A 344 1 18 HELIX 17 17 PRO A 345 VAL A 347 5 3 HELIX 18 18 ASP A 360 CYS A 367 1 8 HELIX 19 19 SER B 19 GLY B 28 1 10 HELIX 20 20 GLY B 40 SER B 44 5 5 HELIX 21 21 THR B 46 ALA B 52 1 7 HELIX 22 22 ALA B 61 SER B 66 1 6 HELIX 23 23 THR B 79 GLY B 83 5 5 HELIX 24 24 GLU B 86 ILE B 90 5 5 HELIX 25 25 ASN B 105 ARG B 115 1 11 HELIX 26 26 GLU B 123 MET B 125 5 3 HELIX 27 27 SER B 129 MET B 134 5 6 HELIX 28 28 ASP B 135 PHE B 156 1 22 HELIX 29 29 GLY B 181 GLY B 195 1 15 HELIX 30 30 ALA B 206 SER B 213 1 8 HELIX 31 31 GLN B 247 THR B 258 1 12 HELIX 32 32 THR B 277 LYS B 283 1 7 HELIX 33 33 ALA B 294 GLY B 298 5 5 HELIX 34 34 VAL B 323 ARG B 326 5 4 HELIX 35 35 VAL B 327 THR B 344 1 18 HELIX 36 36 PRO B 345 VAL B 347 5 3 HELIX 37 37 ASP B 360 GLY B 365 1 6 HELIX 38 38 SER C 35 ASN C 45 1 11 HELIX 39 39 GLY C 54 ALA C 60 1 7 HELIX 40 40 ALA C 62 LYS C 75 1 14 HELIX 41 41 GLY C 93 ALA C 102 1 10 HELIX 42 42 PRO C 105 ASP C 107 5 3 HELIX 43 43 LEU C 112 ASN C 116 1 5 HELIX 44 44 ASN C 131 ASN C 135 5 5 HELIX 45 45 PRO C 136 ASP C 141 1 6 HELIX 46 46 ASN C 176 ARG C 181 5 6 HELIX 47 47 ASP C 190 MET C 202 1 13 SHEET 1 A 6 THR A 56 ALA A 58 0 SHEET 2 A 6 GLU A 32 GLU A 36 1 N VAL A 33 O THR A 56 SHEET 3 A 6 LYS A 2 ILE A 5 1 N ILE A 3 O ILE A 34 SHEET 4 A 6 VAL A 70 GLN A 75 1 O TRP A 72 N ALA A 4 SHEET 5 A 6 VAL A 95 HIS A 99 1 O HIS A 99 N VAL A 74 SHEET 6 A 6 THR A 118 ALA A 121 1 O TYR A 120 N LEU A 96 SHEET 1 B 7 LYS A 217 PHE A 218 0 SHEET 2 B 7 VAL A 197 THR A 201 1 N VAL A 198 O LYS A 217 SHEET 3 B 7 ARG A 174 PHE A 178 1 N VAL A 177 O MET A 199 SHEET 4 B 7 ILE A 260 THR A 263 1 O ILE A 262 N PHE A 178 SHEET 5 B 7 SER A 288 ASP A 292 1 O VAL A 289 N ALA A 261 SHEET 6 B 7 VAL A 315 GLY A 319 1 O VAL A 318 N ILE A 290 SHEET 7 B 7 LYS A 308 LYS A 312 -1 N VAL A 310 O ILE A 317 SHEET 1 C 7 THR B 56 ALA B 58 0 SHEET 2 C 7 GLU B 32 GLU B 36 1 N VAL B 33 O THR B 56 SHEET 3 C 7 LYS B 2 ILE B 5 1 N ILE B 3 O ILE B 34 SHEET 4 C 7 VAL B 70 GLN B 75 1 O TRP B 72 N ALA B 4 SHEET 5 C 7 VAL B 95 HIS B 99 1 O VAL B 95 N VAL B 71 SHEET 6 C 7 THR B 118 ALA B 121 1 O THR B 118 N LEU B 96 SHEET 7 C 7 CYS B 367 THR B 369 -1 O VAL B 368 N ALA B 119 SHEET 1 D 2 MET B 163 THR B 165 0 SHEET 2 D 2 GLY B 168 VAL B 170 -1 O GLY B 168 N THR B 165 SHEET 1 E 7 LYS B 217 PHE B 218 0 SHEET 2 E 7 VAL B 197 THR B 201 1 N ALA B 200 O LYS B 217 SHEET 3 E 7 ARG B 174 PHE B 178 1 N VAL B 175 O VAL B 197 SHEET 4 E 7 ILE B 260 THR B 263 1 O ILE B 262 N PHE B 178 SHEET 5 E 7 VAL B 289 ASP B 292 1 O ILE B 291 N THR B 263 SHEET 6 E 7 VAL B 315 VAL B 318 1 O VAL B 318 N ASP B 292 SHEET 7 E 7 ILE B 309 LYS B 312 -1 N VAL B 310 O ILE B 317 SHEET 1 F 6 VAL C 109 GLU C 111 0 SHEET 2 F 6 GLU C 79 ILE C 84 1 N ILE C 84 O PHE C 110 SHEET 3 F 6 LYS C 48 PRO C 53 1 N ILE C 51 O SER C 81 SHEET 4 F 6 VAL C 124 ILE C 128 1 O PHE C 126 N VAL C 52 SHEET 5 F 6 THR C 159 LYS C 164 1 O LEU C 161 N ALA C 125 SHEET 6 F 6 THR C 184 PHE C 188 1 O LEU C 187 N PHE C 162 SITE 1 AC1 10 GLY A 179 VAL A 180 VAL A 182 ASP A 202 SITE 2 AC1 10 VAL A 203 ARG A 204 ALA A 265 LEU A 275 SITE 3 AC1 10 HOH A 521 LYS B 270 SITE 1 AC2 25 GLN B 132 GLY C 54 TYR C 55 GLY C 56 SITE 2 AC2 25 VAL C 87 ALA C 88 GLY C 89 ARG C 90 SITE 3 AC2 25 MET C 91 PRO C 92 GLY C 129 ALA C 130 SITE 4 AC2 25 ASN C 131 ASP C 132 VAL C 133 LYS C 164 SITE 5 AC2 25 ARG C 165 SER C 166 ALA C 168 SER C 169 SITE 6 AC2 25 GLY C 170 TYR C 171 GLY C 189 ASP C 190 SITE 7 AC2 25 ALA C 191 CRYST1 63.130 70.330 195.140 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015840 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014219 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005125 0.00000