HEADER PROTEIN BINDING 20-JAN-06 2FS1 TITLE SOLUTION STRUCTURE OF PSD-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PSD-1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FINEGOLDIA MAGNA ATCC 29328, STREPTOCOCCUS SOURCE 3 DYSGALACTIAE, STREPTOCOCCUS EQUI, STREPTOCOCCUS CANIS, STREPTOCOCCUS SOURCE 4 SP.; SOURCE 5 ORGANISM_COMMON: , , , ,; SOURCE 6 ORGANISM_TAXID: 334413,1334,1336,1329,1306; SOURCE 7 STRAIN: ATCC 29328, , , ,; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: XL-10; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PG58 KEYWDS SOLUTION STRUCTURE, PSD-1, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.HE,D.A.ROZAK,N.SARI,Y.CHEN,P.BRYAN,J.ORBAN REVDAT 4 09-MAR-22 2FS1 1 REMARK REVDAT 3 24-FEB-09 2FS1 1 VERSN REVDAT 2 19-DEC-06 2FS1 2 SOURCE EXPDTA REMARK ATOM REVDAT 2 2 2 MASTER REVDAT 1 05-DEC-06 2FS1 0 JRNL AUTH Y.HE,D.A.ROZAK,N.SARI,Y.CHEN,P.BRYAN,J.ORBAN JRNL TITL STRUCTURE, DYNAMICS, AND STABILITY VARIATION IN BACTERIAL JRNL TITL 2 ALBUMIN BINDING MODULES: IMPLICATIONS FOR SPECIES JRNL TITL 3 SPECIFICITY. JRNL REF BIOCHEMISTRY V. 45 10102 2006 JRNL REFN ISSN 0006-2960 JRNL PMID 16906768 JRNL DOI 10.1021/BI060409M REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.5, CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE REMARK 3 -KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE, REMARK 3 SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2FS1 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JAN-06. REMARK 100 THE DEPOSITION ID IS D_1000036241. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 50 MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.2~0.4 MM PSD-1, 50 MM SODIUM REMARK 210 PHOSPHATE BUFFER, PH 7.0, 0.1 MM REMARK 210 EDTA, 10% D2O, 90% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; 3D HNCACB; 3D REMARK 210 HNCO; 3D CBCA(CO)NH; REMARK 210 3DHBHA(CBCACO)NH; 3D(H)C(CO)NH- REMARK 210 TOCSY; 3DCCONH 2D-CBHD; 2DCBHE REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, SPARKY 3, CNS 1.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS CALCULATED USING 1063 RESTRAINTS. MODEL REMARK 210 21 IS AN AVERAGE OF THE 20 CONFORMERS CALCULATED FROM REMARK 210 EXPERIMENTAL RESTRAINTS. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN A 11 H ALA A 15 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 3 -72.45 -175.26 REMARK 500 1 VAL A 4 30.74 -160.36 REMARK 500 1 ILE A 25 172.31 -49.36 REMARK 500 1 THR A 38 -152.86 -92.44 REMARK 500 1 VAL A 39 -41.73 -137.20 REMARK 500 1 ALA A 52 59.29 -150.28 REMARK 500 2 ALA A 3 86.76 -159.12 REMARK 500 2 VAL A 4 28.04 -153.63 REMARK 500 2 ILE A 25 172.36 -49.43 REMARK 500 2 THR A 38 -157.04 -92.50 REMARK 500 2 VAL A 39 -38.62 -131.30 REMARK 500 2 PRO A 54 -165.09 -74.12 REMARK 500 3 GLU A 2 -48.18 -132.61 REMARK 500 3 ALA A 3 119.45 61.84 REMARK 500 3 VAL A 4 31.11 -152.49 REMARK 500 3 ILE A 25 172.36 -48.96 REMARK 500 3 THR A 38 -154.33 -98.47 REMARK 500 3 VAL A 39 -43.84 -134.64 REMARK 500 3 PRO A 54 100.17 -51.12 REMARK 500 3 THR A 55 34.05 -150.39 REMARK 500 4 GLU A 2 -82.89 62.11 REMARK 500 4 ALA A 3 150.99 173.61 REMARK 500 4 VAL A 4 36.07 -174.18 REMARK 500 4 ILE A 25 170.46 -47.55 REMARK 500 4 THR A 38 -151.83 -92.31 REMARK 500 4 VAL A 39 -43.66 -137.16 REMARK 500 4 ALA A 52 58.62 -142.51 REMARK 500 4 LEU A 53 109.96 -58.74 REMARK 500 4 THR A 55 88.14 58.94 REMARK 500 5 ALA A 3 74.38 170.41 REMARK 500 5 VAL A 4 38.92 -149.37 REMARK 500 5 ILE A 25 172.90 -49.19 REMARK 500 5 LYS A 37 42.53 -101.92 REMARK 500 5 THR A 38 106.76 179.04 REMARK 500 5 THR A 55 31.09 -164.00 REMARK 500 6 ALA A 3 141.90 -172.49 REMARK 500 6 VAL A 4 37.80 -159.41 REMARK 500 6 ILE A 25 173.34 -55.76 REMARK 500 6 THR A 38 -147.25 -87.87 REMARK 500 6 VAL A 39 -42.92 -142.41 REMARK 500 6 PRO A 54 -172.54 -63.76 REMARK 500 6 THR A 55 32.85 -158.71 REMARK 500 7 ALA A 3 108.77 -174.81 REMARK 500 7 VAL A 4 29.72 -152.81 REMARK 500 7 ILE A 25 169.83 -47.23 REMARK 500 7 THR A 38 -149.10 -145.81 REMARK 500 7 VAL A 39 -46.13 -140.05 REMARK 500 7 ALA A 52 58.73 -147.83 REMARK 500 8 GLU A 2 129.03 -174.86 REMARK 500 8 ALA A 3 -70.69 -176.62 REMARK 500 REMARK 500 THIS ENTRY HAS 128 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE PROTEIN WAS OBTAINED BY RECOMBINING SEVEN ARTIFICIAL REMARK 999 CONSTRUCTS THAT CUMULATIVELY REPRESENTED MUCH OF THE REMARK 999 GENETIC DIVERSITY FOUND IN 16 NATIVE ALBUMIN BINDING REMARK 999 DOMAINS FROM SIX PROTEINS AND BACTERIAL SPECIES NAMELY REMARK 999 PEPTOSTREPTOCOCCUS MAGNUS [L3316-GA1], STREPTOCOCCUS REMARK 999 DYSGALACTIAE [MAG-GA1], STREPTOCOCCUS EQUI [ZAG-GA], REMARK 999 STREPTOCOCCUS CANIS [DG12-GA2], (ROZAK, ALEXANDER, ET AL. REMARK 999 BIOCHEMISTRY 2006, IN PRESS). THE CHARACTERS ENCLOSED IN REMARK 999 SQUARE BRACKETS REFER TO THE PARTICULAR ALBUMIN BINDING REMARK 999 DOMAIN FOUND IN THE BACTERIA. THERE IS NO AMINO ACID REMARK 999 SEQUENCE DATABASE REFERENCE AVAILABLE FOR THE RECOMBINANT REMARK 999 PROTEIN. DBREF 2FS1 A 12 52 UNP Q51918 Q51918_PEPMA 798 839 SEQRES 1 A 56 MET GLU ALA VAL ASP ALA ASN SER LEU ALA GLN ALA LYS SEQRES 2 A 56 GLU ALA ALA ILE LYS GLU LEU LYS GLN TYR GLY ILE GLY SEQRES 3 A 56 ASP TYR TYR ILE LYS LEU ILE ASN ASN ALA LYS THR VAL SEQRES 4 A 56 GLU GLY VAL GLU SER LEU LYS ASN GLU ILE LEU LYS ALA SEQRES 5 A 56 LEU PRO THR GLU HELIX 1 1 VAL A 4 GLY A 24 1 21 HELIX 2 2 GLY A 26 ASN A 35 1 10 HELIX 3 3 VAL A 39 ALA A 52 1 14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1