HEADER SIGNALING PROTEIN 26-JAN-06 2FU5 TITLE STRUCTURE OF RAB8 IN COMPLEX WITH MSS4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GUANINE NUCLEOTIDE EXCHANGE FACTOR MSS4; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 11-123; COMPND 5 SYNONYM: RAB-INTERACTING FACTOR, MSS4; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RAS-RELATED PROTEIN RAB-8A; COMPND 9 CHAIN: C, D; COMPND 10 FRAGMENT: RESIDUES 1-183; COMPND 11 SYNONYM: ONCOGENE C-MEL, RAB8; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RABIF, MSS4, RASGRF3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET19; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 14 ORGANISM_TAXID: 10090; SOURCE 15 GENE: RAB8A, MEL, RAB8; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIL; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET30A KEYWDS MSS4:RAB8 PROTEIN COMPLEX, GEF:GTPASE NUCLEOTIDE FREE COMPLEX, KEYWDS 2 NUCLEOTIDE EXCHANGE VIA UNFOLDING OF NUCLEOTIDE BINDING REGION, KEYWDS 3 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.ITZEN,O.PYLYPENKO,R.S.GOODY,A.RAK REVDAT 5 25-OCT-23 2FU5 1 REMARK SEQADV LINK REVDAT 4 18-OCT-17 2FU5 1 REMARK REVDAT 3 24-FEB-09 2FU5 1 VERSN REVDAT 2 25-APR-06 2FU5 1 JRNL REVDAT 1 04-APR-06 2FU5 0 JRNL AUTH A.ITZEN,O.PYLYPENKO,R.S.GOODY,K.ALEXANDROV,A.RAK JRNL TITL NUCLEOTIDE EXCHANGE VIA LOCAL PROTEIN UNFOLDING-STRUCTURE OF JRNL TITL 2 RAB8 IN COMPLEX WITH MSS4 JRNL REF EMBO J. V. 25 1445 2006 JRNL REFN ISSN 0261-4189 JRNL PMID 16541104 JRNL DOI 10.1038/SJ.EMBOJ.7601044 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 38678 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2036 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2235 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 117 REMARK 3 BIN FREE R VALUE : 0.2960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4162 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 301 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.186 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.175 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.113 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.901 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4232 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5669 ; 1.325 ; 1.948 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 503 ; 6.417 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 209 ;37.436 ;23.876 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 786 ;16.551 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;21.321 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 621 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3135 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1741 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2818 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 320 ; 0.194 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 46 ; 0.159 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 27 ; 0.179 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2633 ; 1.123 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4067 ; 1.824 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1835 ; 2.165 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1602 ; 3.299 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2FU5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-JAN-06. REMARK 100 THE DEPOSITION ID IS D_1000036315. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PRODC REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40718 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 19.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1HXR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 50MM TRISHCL PH 9.0, 0.2M REMARK 280 MAGNESIUM ACETATE, 0.15% (W/V) 1,2,3-HEPTANETRIOLE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 51 REMARK 465 PRO A 52 REMARK 465 ALA A 53 REMARK 465 LEU A 54 REMARK 465 SER A 55 REMARK 465 ASP A 56 REMARK 465 GLY A 57 REMARK 465 SER A 58 REMARK 465 ASN A 59 REMARK 465 PRO A 60 REMARK 465 LYS B 51 REMARK 465 PRO B 52 REMARK 465 ALA B 53 REMARK 465 LEU B 54 REMARK 465 SER B 55 REMARK 465 ASP B 56 REMARK 465 GLY B 57 REMARK 465 SER B 58 REMARK 465 ASN B 59 REMARK 465 PRO B 60 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 GLY C 20 REMARK 465 LYS C 21 REMARK 465 THR C 22 REMARK 465 CYS C 23 REMARK 465 VAL C 24 REMARK 465 LEU C 25 REMARK 465 PHE C 26 REMARK 465 ARG C 27 REMARK 465 PHE C 28 REMARK 465 SER C 29 REMARK 465 GLU C 30 REMARK 465 ASP C 31 REMARK 465 ALA C 32 REMARK 465 PHE C 33 REMARK 465 ASN C 34 REMARK 465 SER C 35 REMARK 465 ALA C 65 REMARK 465 GLY C 66 REMARK 465 GLN C 67 REMARK 465 GLU C 68 REMARK 465 ARG C 69 REMARK 465 PHE C 70 REMARK 465 ARG C 71 REMARK 465 THR C 72 REMARK 465 ILE C 73 REMARK 465 CYS C 123 REMARK 465 ASP C 124 REMARK 465 LYS C 153 REMARK 465 ALA C 154 REMARK 465 ASN C 155 REMARK 465 ALA C 179 REMARK 465 THR C 180 REMARK 465 ALA C 181 REMARK 465 ALA C 182 REMARK 465 GLY C 183 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 GLY D 18 REMARK 465 VAL D 19 REMARK 465 GLY D 20 REMARK 465 LYS D 21 REMARK 465 THR D 22 REMARK 465 CYS D 23 REMARK 465 VAL D 24 REMARK 465 LEU D 25 REMARK 465 PHE D 26 REMARK 465 ARG D 27 REMARK 465 PHE D 28 REMARK 465 SER D 29 REMARK 465 GLU D 30 REMARK 465 ASP D 31 REMARK 465 CYS D 123 REMARK 465 ASN D 126 REMARK 465 SER D 151 REMARK 465 ALA D 152 REMARK 465 LYS D 153 REMARK 465 ALA D 179 REMARK 465 THR D 180 REMARK 465 ALA D 181 REMARK 465 ALA D 182 REMARK 465 GLY D 183 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 9 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 49 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 50 CG CD CE NZ REMARK 470 HIS B 9 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 50 CG CD CE NZ REMARK 470 ILE C 156 CG1 CG2 CD1 REMARK 470 ILE D 73 CD1 REMARK 470 LYS D 178 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 9 47.14 -107.27 REMARK 500 MET A 48 22.49 -77.42 REMARK 500 SER C 17 -160.81 -161.59 REMARK 500 ALA C 76 -94.22 -51.48 REMARK 500 ASP C 113 42.23 -95.54 REMARK 500 ASN C 126 -22.36 -153.76 REMARK 500 LYS C 128 89.75 53.14 REMARK 500 SER C 151 81.20 50.66 REMARK 500 ASN C 176 -82.42 -61.45 REMARK 500 PHE D 33 -161.61 -113.52 REMARK 500 ASN D 34 120.82 -172.13 REMARK 500 THR D 64 50.64 -117.02 REMARK 500 ASN D 155 -2.06 68.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 23 SG REMARK 620 2 CYS A 26 SG 115.5 REMARK 620 3 CYS A 94 SG 103.9 99.8 REMARK 620 4 CYS A 97 SG 104.6 119.3 112.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 23 SG REMARK 620 2 CYS B 26 SG 113.8 REMARK 620 3 CYS B 94 SG 106.8 98.3 REMARK 620 4 CYS B 97 SG 104.0 119.6 114.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME B 4321 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 4322 DBREF 2FU5 A 11 123 UNP P47224 MSS4_HUMAN 11 123 DBREF 2FU5 B 11 123 UNP P47224 MSS4_HUMAN 11 123 DBREF 2FU5 C 1 183 UNP P55258 RAB8A_MOUSE 1 183 DBREF 2FU5 D 1 183 UNP P55258 RAB8A_MOUSE 1 183 SEQADV 2FU5 GLN A 7 UNP P47224 CLONING ARTIFACT SEQADV 2FU5 GLY A 8 UNP P47224 CLONING ARTIFACT SEQADV 2FU5 HIS A 9 UNP P47224 CLONING ARTIFACT SEQADV 2FU5 MET A 10 UNP P47224 CLONING ARTIFACT SEQADV 2FU5 GLN B 7 UNP P47224 CLONING ARTIFACT SEQADV 2FU5 GLY B 8 UNP P47224 CLONING ARTIFACT SEQADV 2FU5 HIS B 9 UNP P47224 CLONING ARTIFACT SEQADV 2FU5 MET B 10 UNP P47224 CLONING ARTIFACT SEQRES 1 A 117 GLN GLY HIS MET VAL SER ALA GLU GLY ARG ASN ARG LYS SEQRES 2 A 117 ALA VAL LEU CYS GLN ARG CYS GLY SER ARG VAL LEU GLN SEQRES 3 A 117 PRO GLY THR ALA LEU PHE SER ARG ARG GLN LEU PHE LEU SEQRES 4 A 117 PRO SER MET ARG LYS LYS PRO ALA LEU SER ASP GLY SER SEQRES 5 A 117 ASN PRO ASP GLY ASP LEU LEU GLN GLU HIS TRP LEU VAL SEQRES 6 A 117 GLU ASP MET PHE ILE PHE GLU ASN VAL GLY PHE THR LYS SEQRES 7 A 117 ASP VAL GLY ASN ILE LYS PHE LEU VAL CYS ALA ASP CYS SEQRES 8 A 117 GLU ILE GLY PRO ILE GLY TRP HIS CYS LEU ASP ASP LYS SEQRES 9 A 117 ASN SER PHE TYR VAL ALA LEU GLU ARG VAL SER HIS GLU SEQRES 1 B 117 GLN GLY HIS MET VAL SER ALA GLU GLY ARG ASN ARG LYS SEQRES 2 B 117 ALA VAL LEU CYS GLN ARG CYS GLY SER ARG VAL LEU GLN SEQRES 3 B 117 PRO GLY THR ALA LEU PHE SER ARG ARG GLN LEU PHE LEU SEQRES 4 B 117 PRO SER MET ARG LYS LYS PRO ALA LEU SER ASP GLY SER SEQRES 5 B 117 ASN PRO ASP GLY ASP LEU LEU GLN GLU HIS TRP LEU VAL SEQRES 6 B 117 GLU ASP MET PHE ILE PHE GLU ASN VAL GLY PHE THR LYS SEQRES 7 B 117 ASP VAL GLY ASN ILE LYS PHE LEU VAL CYS ALA ASP CYS SEQRES 8 B 117 GLU ILE GLY PRO ILE GLY TRP HIS CYS LEU ASP ASP LYS SEQRES 9 B 117 ASN SER PHE TYR VAL ALA LEU GLU ARG VAL SER HIS GLU SEQRES 1 C 183 MET ALA LYS THR TYR ASP TYR LEU PHE LYS LEU LEU LEU SEQRES 2 C 183 ILE GLY ASP SER GLY VAL GLY LYS THR CYS VAL LEU PHE SEQRES 3 C 183 ARG PHE SER GLU ASP ALA PHE ASN SER THR PHE ILE SER SEQRES 4 C 183 THR ILE GLY ILE ASP PHE LYS ILE ARG THR ILE GLU LEU SEQRES 5 C 183 ASP GLY LYS ARG ILE LYS LEU GLN ILE TRP ASP THR ALA SEQRES 6 C 183 GLY GLN GLU ARG PHE ARG THR ILE THR THR ALA TYR TYR SEQRES 7 C 183 ARG GLY ALA MET GLY ILE MET LEU VAL TYR ASP ILE THR SEQRES 8 C 183 ASN GLU LYS SER PHE ASP ASN ILE ARG ASN TRP ILE ARG SEQRES 9 C 183 ASN ILE GLU GLU HIS ALA SER ALA ASP VAL GLU LYS MET SEQRES 10 C 183 ILE LEU GLY ASN LYS CYS ASP VAL ASN ASP LYS ARG GLN SEQRES 11 C 183 VAL SER LYS GLU ARG GLY GLU LYS LEU ALA LEU ASP TYR SEQRES 12 C 183 GLY ILE LYS PHE MET GLU THR SER ALA LYS ALA ASN ILE SEQRES 13 C 183 ASN VAL GLU ASN ALA PHE PHE THR LEU ALA ARG ASP ILE SEQRES 14 C 183 LYS ALA LYS MET ASP LYS ASN TRP LYS ALA THR ALA ALA SEQRES 15 C 183 GLY SEQRES 1 D 183 MET ALA LYS THR TYR ASP TYR LEU PHE LYS LEU LEU LEU SEQRES 2 D 183 ILE GLY ASP SER GLY VAL GLY LYS THR CYS VAL LEU PHE SEQRES 3 D 183 ARG PHE SER GLU ASP ALA PHE ASN SER THR PHE ILE SER SEQRES 4 D 183 THR ILE GLY ILE ASP PHE LYS ILE ARG THR ILE GLU LEU SEQRES 5 D 183 ASP GLY LYS ARG ILE LYS LEU GLN ILE TRP ASP THR ALA SEQRES 6 D 183 GLY GLN GLU ARG PHE ARG THR ILE THR THR ALA TYR TYR SEQRES 7 D 183 ARG GLY ALA MET GLY ILE MET LEU VAL TYR ASP ILE THR SEQRES 8 D 183 ASN GLU LYS SER PHE ASP ASN ILE ARG ASN TRP ILE ARG SEQRES 9 D 183 ASN ILE GLU GLU HIS ALA SER ALA ASP VAL GLU LYS MET SEQRES 10 D 183 ILE LEU GLY ASN LYS CYS ASP VAL ASN ASP LYS ARG GLN SEQRES 11 D 183 VAL SER LYS GLU ARG GLY GLU LYS LEU ALA LEU ASP TYR SEQRES 12 D 183 GLY ILE LYS PHE MET GLU THR SER ALA LYS ALA ASN ILE SEQRES 13 D 183 ASN VAL GLU ASN ALA PHE PHE THR LEU ALA ARG ASP ILE SEQRES 14 D 183 LYS ALA LYS MET ASP LYS ASN TRP LYS ALA THR ALA ALA SEQRES 15 D 183 GLY HET ZN A 502 1 HET BME A4322 4 HET ZN B 501 1 HET BME B4321 4 HETNAM ZN ZINC ION HETNAM BME BETA-MERCAPTOETHANOL FORMUL 5 ZN 2(ZN 2+) FORMUL 6 BME 2(C2 H6 O S) FORMUL 9 HOH *301(H2 O) HELIX 1 1 ASP A 73 PHE A 77 5 5 HELIX 2 2 GLU A 118 VAL A 120 5 3 HELIX 3 3 ASP B 73 PHE B 77 5 5 HELIX 4 4 GLU B 118 VAL B 120 5 3 HELIX 5 5 THR C 36 GLY C 42 1 7 HELIX 6 6 ASN C 92 ALA C 110 1 19 HELIX 7 7 SER C 132 TYR C 143 1 12 HELIX 8 8 ASN C 157 TRP C 177 1 21 HELIX 9 9 SER D 35 GLY D 42 1 8 HELIX 10 10 THR D 74 ARG D 79 1 6 HELIX 11 11 ASN D 92 ALA D 110 1 19 HELIX 12 12 SER D 132 GLY D 144 1 13 HELIX 13 13 ASN D 157 LYS D 178 1 22 SHEET 1 A 3 ARG A 29 LEU A 31 0 SHEET 2 A 3 ALA A 20 LEU A 22 -1 N VAL A 21 O VAL A 30 SHEET 3 A 3 SER A 121 GLU A 123 -1 O SER A 121 N LEU A 22 SHEET 1 B12 LEU A 37 SER A 39 0 SHEET 2 B12 HIS A 68 VAL A 71 -1 O LEU A 70 N LEU A 37 SHEET 3 B12 PHE A 113 ALA A 116 -1 O PHE A 113 N VAL A 71 SHEET 4 B12 GLY A 103 CYS A 106 -1 N TRP A 104 O TYR A 114 SHEET 5 B12 ILE A 89 VAL A 93 -1 N LYS A 90 O HIS A 105 SHEET 6 B12 VAL A 80 THR A 83 -1 N GLY A 81 O VAL A 93 SHEET 7 B12 ILE D 43 LEU D 52 -1 O ASP D 44 N PHE A 82 SHEET 8 B12 LYS D 55 THR D 64 -1 O LEU D 59 N ARG D 48 SHEET 9 B12 TYR D 7 ILE D 14 1 N TYR D 7 O LYS D 58 SHEET 10 B12 GLY D 83 ASP D 89 1 O VAL D 87 N ILE D 14 SHEET 11 B12 GLU D 115 ASN D 121 1 O LEU D 119 N LEU D 86 SHEET 12 B12 LYS D 146 THR D 150 1 O MET D 148 N GLY D 120 SHEET 1 C 2 LEU A 43 PRO A 46 0 SHEET 2 C 2 GLY A 62 LEU A 65 -1 O LEU A 65 N LEU A 43 SHEET 1 D 3 ARG B 29 LEU B 31 0 SHEET 2 D 3 ALA B 20 LEU B 22 -1 N VAL B 21 O VAL B 30 SHEET 3 D 3 SER B 121 GLU B 123 -1 O SER B 121 N LEU B 22 SHEET 1 E12 LEU B 37 SER B 39 0 SHEET 2 E12 HIS B 68 VAL B 71 -1 O LEU B 70 N LEU B 37 SHEET 3 E12 PHE B 113 ALA B 116 -1 O PHE B 113 N VAL B 71 SHEET 4 E12 GLY B 103 CYS B 106 -1 N TRP B 104 O TYR B 114 SHEET 5 E12 ILE B 89 VAL B 93 -1 N LYS B 90 O HIS B 105 SHEET 6 E12 VAL B 80 THR B 83 -1 N GLY B 81 O VAL B 93 SHEET 7 E12 ILE C 43 LEU C 52 -1 O PHE C 45 N PHE B 82 SHEET 8 E12 LYS C 55 ASP C 63 -1 O ILE C 57 N ILE C 50 SHEET 9 E12 TYR C 7 ILE C 14 1 N LEU C 11 O GLN C 60 SHEET 10 E12 GLY C 83 ASP C 89 1 O VAL C 87 N ILE C 14 SHEET 11 E12 GLU C 115 ASN C 121 1 O ASN C 121 N TYR C 88 SHEET 12 E12 LYS C 146 GLU C 149 1 O LYS C 146 N ILE C 118 SHEET 1 F 2 LEU B 43 PRO B 46 0 SHEET 2 F 2 GLY B 62 LEU B 65 -1 O ASP B 63 N LEU B 45 LINK SG CYS A 106 S2 BME A4322 1555 1555 2.05 LINK SG CYS B 106 S2 BME B4321 1555 1555 2.00 LINK SG CYS A 23 ZN ZN A 502 1555 1555 2.30 LINK SG CYS A 26 ZN ZN A 502 1555 1555 2.30 LINK SG CYS A 94 ZN ZN A 502 1555 1555 2.37 LINK SG CYS A 97 ZN ZN A 502 1555 1555 2.27 LINK SG CYS B 23 ZN ZN B 501 1555 1555 2.35 LINK SG CYS B 26 ZN ZN B 501 1555 1555 2.35 LINK SG CYS B 94 ZN ZN B 501 1555 1555 2.35 LINK SG CYS B 97 ZN ZN B 501 1555 1555 2.27 CISPEP 1 GLY A 100 PRO A 101 0 0.98 CISPEP 2 GLY B 100 PRO B 101 0 1.15 SITE 1 AC1 4 CYS B 23 CYS B 26 CYS B 94 CYS B 97 SITE 1 AC2 4 CYS A 23 CYS A 26 CYS A 94 CYS A 97 SITE 1 AC3 5 LYS A 19 GLU A 123 ASN B 88 ILE B 89 SITE 2 AC3 5 CYS B 106 SITE 1 AC4 5 ASN A 88 ILE A 89 CYS A 106 LYS B 19 SITE 2 AC4 5 GLU B 123 CRYST1 40.920 49.850 83.480 102.88 97.46 90.12 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024438 0.000051 0.003296 0.00000 SCALE2 0.000000 0.020060 0.004634 0.00000 SCALE3 0.000000 0.000000 0.012399 0.00000