HEADER    TRANSLATION                             31-JAN-06   2FVO              
TITLE     DOCKING OF THE MODIFIED RF1 X-RAY STRUCTURE INTO THE LOW RESOLUTION   
TITLE    2 CRYO-EM MAP OF E.COLI 70S RIBOSOME BOUND WITH RF1                    
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: PEPTIDE CHAIN RELEASE FACTOR 1;                            
COMPND   3 CHAIN: A;                                                            
COMPND   4 SYNONYM: RF-1;                                                       
COMPND   5 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA;                            
SOURCE   3 ORGANISM_TAXID: 2336;                                                
SOURCE   4 GENE: PRFA;                                                          
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 562                                         
KEYWDS    RF1 RIBOSOME CRYO-EM, TRANSLATION                                     
EXPDTA    ELECTRON MICROSCOPY                                                   
MDLTYP    CA ATOMS ONLY, CHAIN A                                                
AUTHOR    U.RAWAT,H.GAO,A.ZAVIALOV,R.GURSKY,M.EHRENBERG,J.FRANK                 
REVDAT   4   14-FEB-24 2FVO    1       REMARK                                   
REVDAT   3   18-JUL-18 2FVO    1       REMARK                                   
REVDAT   2   24-FEB-09 2FVO    1       VERSN                                    
REVDAT   1   04-APR-06 2FVO    0                                                
JRNL        AUTH   U.RAWAT,H.GAO,A.ZAVIALOV,R.GURSKY,M.EHRENBERG,J.FRANK        
JRNL        TITL   INTERACTIONS OF THE RELEASE FACTOR RF1 WITH THE RIBOSOME AS  
JRNL        TITL 2 REVEALED BY CRYO-EM.                                         
JRNL        REF    J.MOL.BIOL.                   V. 357  1144 2006              
JRNL        REFN                   ISSN 0022-2836                               
JRNL        PMID   16476444                                                     
JRNL        DOI    10.1016/J.JMB.2006.01.038                                    
REMARK   1                                                                      
REMARK   1 REFERENCE 1                                                          
REMARK   1  AUTH   D.H.SHIN,J.BRANDSEN,J.JANCARIK,H.YOKOTA,R.KIM,S.H.KIM        
REMARK   1  TITL   STRUCTURAL ANALYSES OF PEPTIDE RELEASE FACTOR 1 FROM         
REMARK   1  TITL 2 THERMOTOGA MARITIMA REVEAL DOMAIN FLEXIBILITY REQUIRED FOR   
REMARK   1  TITL 3 ITS INTERACTION WITH THE RIBOSOME                            
REMARK   1  REF    J.MOL.BIOL.                   V. 341   227 2004              
REMARK   1  REFN                   ISSN 0022-2836                               
REMARK   1  PMID   15312775                                                     
REMARK   1  DOI    10.1016/J.JMB.2004.05.055                                    
REMARK   2                                                                      
REMARK   2 RESOLUTION.   12.80 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   SOFTWARE PACKAGES      : O, SPIDER                                 
REMARK   3   RECONSTRUCTION SCHEMA  : NULL                                      
REMARK   3                                                                      
REMARK   3 EM MAP-MODEL FITTING AND REFINEMENT                                  
REMARK   3   PDB ENTRY                    : 1RQ0                                
REMARK   3   REFINEMENT SPACE             : REAL                                
REMARK   3   REFINEMENT PROTOCOL          : OTHER                               
REMARK   3   REFINEMENT TARGET            : NULL                                
REMARK   3   OVERALL ANISOTROPIC B VALUE  : NULL                                
REMARK   3                                                                      
REMARK   3 FITTING PROCEDURE : METHOD--MANUAL                                   
REMARK   3                                                                      
REMARK   3 EM IMAGE RECONSTRUCTION STATISTICS                                   
REMARK   3   NOMINAL PIXEL SIZE (ANGSTROMS)    : NULL                           
REMARK   3   ACTUAL PIXEL SIZE  (ANGSTROMS)    : NULL                           
REMARK   3   EFFECTIVE RESOLUTION (ANGSTROMS)  : 12.80                          
REMARK   3   NUMBER OF PARTICLES               : 24622                          
REMARK   3   CTF CORRECTION METHOD             : NULL                           
REMARK   3                                                                      
REMARK   3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: TMV                     
REMARK   3                                                                      
REMARK   3 OTHER DETAILS: COORDINATES CONTAIN CA ATOMS ONLY. ALL THE IMAGE      
REMARK   3  PROCESSING WAS DONE IN SPIDER. 0.5 CUTOFF OF FSC                    
REMARK   4                                                                      
REMARK   4 2FVO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-FEB-06.                  
REMARK 100 THE DEPOSITION ID IS D_1000036367.                                   
REMARK 245                                                                      
REMARK 245 EXPERIMENTAL DETAILS                                                 
REMARK 245   RECONSTRUCTION METHOD          : SINGLE PARTICLE                   
REMARK 245   SPECIMEN TYPE                  : VITREOUS ICE (CRYO EM)            
REMARK 245                                                                      
REMARK 245 ELECTRON MICROSCOPE SAMPLE                                           
REMARK 245   SAMPLE TYPE                    : PARTICLE                          
REMARK 245   PARTICLE TYPE                  : POINT                             
REMARK 245   NAME OF SAMPLE                 : E.COLI 70S RIBOSOME - RF2         
REMARK 245                                    COMPLEX                           
REMARK 245   SAMPLE CONCENTRATION (MG ML-1) : 32.00                             
REMARK 245   SAMPLE SUPPORT DETAILS         : QUANTI-FOIL GRIDS COATED WITH A   
REMARK 245                                    THIN CARBON LAYER                 
REMARK 245   SAMPLE VITRIFICATION DETAILS   : RAPID-FREEZING IN LIQUID ETHANE   
REMARK 245   SAMPLE BUFFER                  : POLYMIX BUFFER                    
REMARK 245   PH                             : 7.50                              
REMARK 245   SAMPLE DETAILS                 : NULL                              
REMARK 245                                                                      
REMARK 245 DATA ACQUISITION                                                     
REMARK 245   DATE OF EXPERIMENT                : 01-DEC-02                      
REMARK 245   NUMBER OF MICROGRAPHS-IMAGES      : NULL                           
REMARK 245   TEMPERATURE (KELVIN)              : 93.00                          
REMARK 245   MICROSCOPE MODEL                  : FEI TECNAI F20                 
REMARK 245   DETECTOR TYPE                     : KODAK SO-163 FILM              
REMARK 245   MINIMUM DEFOCUS (NM)              : 2000.00                        
REMARK 245   MAXIMUM DEFOCUS (NM)              : 4000.00                        
REMARK 245   MINIMUM TILT ANGLE (DEGREES)      : 0.00                           
REMARK 245   MAXIMUM TILT ANGLE (DEGREES)      : 0.00                           
REMARK 245   NOMINAL CS                        : 2.00                           
REMARK 245   IMAGING MODE                      : BRIGHT FIELD                   
REMARK 245   ELECTRON DOSE (ELECTRONS NM**-2)  : 2000.00                        
REMARK 245   ILLUMINATION MODE                 : FLOOD BEAM                     
REMARK 245   NOMINAL MAGNIFICATION             : 50000                          
REMARK 245   CALIBRATED MAGNIFICATION          : 49696                          
REMARK 245   SOURCE                            : FIELD EMISSION GUN             
REMARK 245   ACCELERATION VOLTAGE (KV)         : 200                            
REMARK 245   IMAGING DETAILS                   : NULL                           
REMARK 247                                                                      
REMARK 247 ELECTRON MICROSCOPY                                                  
REMARK 247  THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON          
REMARK 247  MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE              
REMARK 247  THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES           
REMARK 247  ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION         
REMARK 247  OF THE STRUCTURE FACTORS.                                           
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     HIS A   208                                                      
REMARK 465     GLY A   209                                                      
REMARK 465     GLY A   210                                                      
REMARK 465     GLN A   211                                                      
REMARK 465     TYR A   212                                                      
REMARK 465     VAL A   213                                                      
REMARK 465     ASN A   214                                                      
REMARK 465     LYS A   215                                                      
REMARK 465     THR A   216                                                      
REMARK 465     LYS A   269                                                      
REMARK 465     ARG A   270                                                      
REMARK 465     LYS A   271                                                      
REMARK 465     SER A   272                                                      
REMARK 465     GLN A   273                                                      
REMARK 465     ILE A   274                                                      
REMARK 465     GLY A   275                                                      
REMARK 465     THR A   276                                                      
REMARK 465     GLY A   277                                                      
REMARK 465     GLU A   278                                                      
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 1RQ0   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF PEPTIDE RELEASING FACTOR 1                      
REMARK 900 RELATED ID: EMD-1184   RELATED DB: EMDB                              
REMARK 900 RELEASE COMPLEX BOUND WITH RF1 (WT)                                  
REMARK 900 RELATED ID: EMD-1185   RELATED DB: EMDB                              
REMARK 900 RELEASE COMPLEX BOUND WITH RF1 (GAQ)                                 
DBREF  2FVO A    1   333  UNP    Q9X183   RF1_THEMA        1    333             
SEQRES   1 A  333  MET LYS GLU LYS LYS LYS GLU ILE GLU LYS LEU LEU ALA          
SEQRES   2 A  333  ARG PRO ASP LEU THR PRO GLU GLN MET LYS ASN TYR GLY          
SEQRES   3 A  333  MET GLU TYR ALA LYS ILE GLU GLU ILE GLU ASN ILE THR          
SEQRES   4 A  333  ASN ARG ILE LYS GLU THR GLN GLU PHE ILE GLU LEU LEU          
SEQRES   5 A  333  ARG GLU GLU GLY GLU ASN GLU LEU GLU ILE GLU LYS TYR          
SEQRES   6 A  333  GLU LYS GLU LEU ASP GLN LEU TYR GLN GLU LEU LEU PHE          
SEQRES   7 A  333  LEU LEU SER PRO GLU ALA SER ASP LYS ALA ILE VAL GLU          
SEQRES   8 A  333  ILE ARG PRO GLY THR GLY GLY GLU GLU ALA ALA LEU PHE          
SEQRES   9 A  333  ALA ARG ASP LEU PHE ARG MET TYR THR ARG TYR ALA GLU          
SEQRES  10 A  333  ARG LYS GLY TRP ASN LEU GLU VAL ALA GLU ILE HIS GLU          
SEQRES  11 A  333  THR ASP LEU GLY GLY ILE ARG GLU VAL VAL PHE PHE VAL          
SEQRES  12 A  333  LYS GLY LYS ASN ALA TYR GLY ILE LEU LYS TYR GLU SER          
SEQRES  13 A  333  GLY VAL HIS ARG VAL GLN ARG VAL PRO VAL THR GLU SER          
SEQRES  14 A  333  GLY GLY ARG ILE HIS THR SER THR ALA THR VAL ALA VAL          
SEQRES  15 A  333  LEU PRO GLU ILE GLU GLU LYS ASP ILE GLU ILE ARG PRO          
SEQRES  16 A  333  GLU ASP LEU LYS ILE GLU THR PHE ARG ALA SER GLY HIS          
SEQRES  17 A  333  GLY GLY GLN TYR VAL ASN LYS THR GLU SER ALA VAL ARG          
SEQRES  18 A  333  ILE THR HIS LEU PRO THR GLY ILE VAL VAL SER CYS GLN          
SEQRES  19 A  333  ASN GLU ARG SER GLN TYR GLN ASN LYS GLN THR ALA LEU          
SEQRES  20 A  333  ARG ILE LEU ARG ALA ARG LEU TYR GLN LEU GLN LYS GLU          
SEQRES  21 A  333  GLN LYS GLU ARG GLU ILE SER GLN LYS ARG LYS SER GLN          
SEQRES  22 A  333  ILE GLY THR GLY GLU ARG SER GLU LYS ILE ARG THR TYR          
SEQRES  23 A  333  ASN PHE PRO GLN ASN ARG VAL THR ASP HIS ARG ILE ASN          
SEQRES  24 A  333  TYR THR SER TYR ARG LEU GLN GLU ILE LEU ASP GLY ASP          
SEQRES  25 A  333  LEU ASP GLU ILE ILE SER LYS LEU ILE GLU HIS ASP ILE          
SEQRES  26 A  333  GLU ASN ASN LEU GLU GLU VAL LEU                              
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000