HEADER TRANSLATION 31-JAN-06 2FVO TITLE DOCKING OF THE MODIFIED RF1 X-RAY STRUCTURE INTO THE LOW RESOLUTION TITLE 2 CRYO-EM MAP OF E.COLI 70S RIBOSOME BOUND WITH RF1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDE CHAIN RELEASE FACTOR 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RF-1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: PRFA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RF1 RIBOSOME CRYO-EM, TRANSLATION EXPDTA ELECTRON MICROSCOPY MDLTYP CA ATOMS ONLY, CHAIN A AUTHOR U.RAWAT,H.GAO,A.ZAVIALOV,R.GURSKY,M.EHRENBERG,J.FRANK REVDAT 4 14-FEB-24 2FVO 1 REMARK REVDAT 3 18-JUL-18 2FVO 1 REMARK REVDAT 2 24-FEB-09 2FVO 1 VERSN REVDAT 1 04-APR-06 2FVO 0 JRNL AUTH U.RAWAT,H.GAO,A.ZAVIALOV,R.GURSKY,M.EHRENBERG,J.FRANK JRNL TITL INTERACTIONS OF THE RELEASE FACTOR RF1 WITH THE RIBOSOME AS JRNL TITL 2 REVEALED BY CRYO-EM. JRNL REF J.MOL.BIOL. V. 357 1144 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16476444 JRNL DOI 10.1016/J.JMB.2006.01.038 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.H.SHIN,J.BRANDSEN,J.JANCARIK,H.YOKOTA,R.KIM,S.H.KIM REMARK 1 TITL STRUCTURAL ANALYSES OF PEPTIDE RELEASE FACTOR 1 FROM REMARK 1 TITL 2 THERMOTOGA MARITIMA REVEAL DOMAIN FLEXIBILITY REQUIRED FOR REMARK 1 TITL 3 ITS INTERACTION WITH THE RIBOSOME REMARK 1 REF J.MOL.BIOL. V. 341 227 2004 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 15312775 REMARK 1 DOI 10.1016/J.JMB.2004.05.055 REMARK 2 REMARK 2 RESOLUTION. 12.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : O, SPIDER REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 1RQ0 REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : OTHER REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : METHOD--MANUAL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 12.80 REMARK 3 NUMBER OF PARTICLES : 24622 REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: TMV REMARK 3 REMARK 3 OTHER DETAILS: COORDINATES CONTAIN CA ATOMS ONLY. ALL THE IMAGE REMARK 3 PROCESSING WAS DONE IN SPIDER. 0.5 CUTOFF OF FSC REMARK 4 REMARK 4 2FVO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-FEB-06. REMARK 100 THE DEPOSITION ID IS D_1000036367. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : VITREOUS ICE (CRYO EM) REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : E.COLI 70S RIBOSOME - RF2 REMARK 245 COMPLEX REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 32.00 REMARK 245 SAMPLE SUPPORT DETAILS : QUANTI-FOIL GRIDS COATED WITH A REMARK 245 THIN CARBON LAYER REMARK 245 SAMPLE VITRIFICATION DETAILS : RAPID-FREEZING IN LIQUID ETHANE REMARK 245 SAMPLE BUFFER : POLYMIX BUFFER REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 01-DEC-02 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : 93.00 REMARK 245 MICROSCOPE MODEL : FEI TECNAI F20 REMARK 245 DETECTOR TYPE : KODAK SO-163 FILM REMARK 245 MINIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 4000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : 0.00 REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : 0.00 REMARK 245 NOMINAL CS : 2.00 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 2000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 50000 REMARK 245 CALIBRATED MAGNIFICATION : 49696 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 208 REMARK 465 GLY A 209 REMARK 465 GLY A 210 REMARK 465 GLN A 211 REMARK 465 TYR A 212 REMARK 465 VAL A 213 REMARK 465 ASN A 214 REMARK 465 LYS A 215 REMARK 465 THR A 216 REMARK 465 LYS A 269 REMARK 465 ARG A 270 REMARK 465 LYS A 271 REMARK 465 SER A 272 REMARK 465 GLN A 273 REMARK 465 ILE A 274 REMARK 465 GLY A 275 REMARK 465 THR A 276 REMARK 465 GLY A 277 REMARK 465 GLU A 278 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RQ0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PEPTIDE RELEASING FACTOR 1 REMARK 900 RELATED ID: EMD-1184 RELATED DB: EMDB REMARK 900 RELEASE COMPLEX BOUND WITH RF1 (WT) REMARK 900 RELATED ID: EMD-1185 RELATED DB: EMDB REMARK 900 RELEASE COMPLEX BOUND WITH RF1 (GAQ) DBREF 2FVO A 1 333 UNP Q9X183 RF1_THEMA 1 333 SEQRES 1 A 333 MET LYS GLU LYS LYS LYS GLU ILE GLU LYS LEU LEU ALA SEQRES 2 A 333 ARG PRO ASP LEU THR PRO GLU GLN MET LYS ASN TYR GLY SEQRES 3 A 333 MET GLU TYR ALA LYS ILE GLU GLU ILE GLU ASN ILE THR SEQRES 4 A 333 ASN ARG ILE LYS GLU THR GLN GLU PHE ILE GLU LEU LEU SEQRES 5 A 333 ARG GLU GLU GLY GLU ASN GLU LEU GLU ILE GLU LYS TYR SEQRES 6 A 333 GLU LYS GLU LEU ASP GLN LEU TYR GLN GLU LEU LEU PHE SEQRES 7 A 333 LEU LEU SER PRO GLU ALA SER ASP LYS ALA ILE VAL GLU SEQRES 8 A 333 ILE ARG PRO GLY THR GLY GLY GLU GLU ALA ALA LEU PHE SEQRES 9 A 333 ALA ARG ASP LEU PHE ARG MET TYR THR ARG TYR ALA GLU SEQRES 10 A 333 ARG LYS GLY TRP ASN LEU GLU VAL ALA GLU ILE HIS GLU SEQRES 11 A 333 THR ASP LEU GLY GLY ILE ARG GLU VAL VAL PHE PHE VAL SEQRES 12 A 333 LYS GLY LYS ASN ALA TYR GLY ILE LEU LYS TYR GLU SER SEQRES 13 A 333 GLY VAL HIS ARG VAL GLN ARG VAL PRO VAL THR GLU SER SEQRES 14 A 333 GLY GLY ARG ILE HIS THR SER THR ALA THR VAL ALA VAL SEQRES 15 A 333 LEU PRO GLU ILE GLU GLU LYS ASP ILE GLU ILE ARG PRO SEQRES 16 A 333 GLU ASP LEU LYS ILE GLU THR PHE ARG ALA SER GLY HIS SEQRES 17 A 333 GLY GLY GLN TYR VAL ASN LYS THR GLU SER ALA VAL ARG SEQRES 18 A 333 ILE THR HIS LEU PRO THR GLY ILE VAL VAL SER CYS GLN SEQRES 19 A 333 ASN GLU ARG SER GLN TYR GLN ASN LYS GLN THR ALA LEU SEQRES 20 A 333 ARG ILE LEU ARG ALA ARG LEU TYR GLN LEU GLN LYS GLU SEQRES 21 A 333 GLN LYS GLU ARG GLU ILE SER GLN LYS ARG LYS SER GLN SEQRES 22 A 333 ILE GLY THR GLY GLU ARG SER GLU LYS ILE ARG THR TYR SEQRES 23 A 333 ASN PHE PRO GLN ASN ARG VAL THR ASP HIS ARG ILE ASN SEQRES 24 A 333 TYR THR SER TYR ARG LEU GLN GLU ILE LEU ASP GLY ASP SEQRES 25 A 333 LEU ASP GLU ILE ILE SER LYS LEU ILE GLU HIS ASP ILE SEQRES 26 A 333 GLU ASN ASN LEU GLU GLU VAL LEU CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000