HEADER LIGASE 10-FEB-06 2FZP TITLE CRYSTAL STRUCTURE OF THE USP8 INTERACTION DOMAIN OF HUMAN NRDP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RING FINGER PROTEIN 41 ISOFORM 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: USP8 INTERACTION DOMAIN; COMPND 5 SYNONYM: NRDP1; COMPND 6 EC: 6.3.2.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RNF41; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-LIC KEYWDS E3 LIGASE, PROTEIN UBIQUITINATION, STRUCTURAL GENOMICS, STRUCTURAL KEYWDS 2 GENOMICS CONSORTIUM, SGC, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR J.R.WALKER,G.V.AVVAKUMOV,S.XUE,E.M.NEWMAN,C.BUTLER-COLE,P.J.FINERTY AUTHOR 2 JR.,J.WEIGELT,M.SUNDSTROM,C.ARROWSMITH,A.EDWARDS,A.BOCHKAREV,S.DHE- AUTHOR 3 PAGANON,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 6 14-FEB-24 2FZP 1 SEQADV REVDAT 5 13-JUL-11 2FZP 1 VERSN REVDAT 4 24-FEB-09 2FZP 1 VERSN REVDAT 3 12-DEC-06 2FZP 1 JRNL REVDAT 2 10-OCT-06 2FZP 1 AUTHOR KEYWDS REVDAT 1 28-MAR-06 2FZP 0 JRNL AUTH G.V.AVVAKUMOV,J.R.WALKER,S.XUE,P.J.FINERTY JR.,F.MACKENZIE, JRNL AUTH 2 E.M.NEWMAN,S.DHE-PAGANON JRNL TITL AMINO-TERMINAL DIMERIZATION, NRDP1-RHODANESE INTERACTION, JRNL TITL 2 AND INHIBITED CATALYTIC DOMAIN CONFORMATION OF THE JRNL TITL 3 UBIQUITIN-SPECIFIC PROTEASE 8 (USP8). JRNL REF J.BIOL.CHEM. V. 281 38061 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 17035239 JRNL DOI 10.1074/JBC.M606704200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH X.WU,L.YEN,L.IRWIN,C.SWEENEY,K.L.CARRAWAY REMARK 1 TITL STABILIZATION OF THE E3 UBIQUITIN LIGASE NRDP1 BY THE REMARK 1 TITL 2 DEUBIQUITINATING ENZYME USP8. REMARK 1 REF MOL.CELL.BIOL. V. 24 7748 2004 REMARK 1 REFN ISSN 0270-7306 REMARK 1 PMID 15314180 REMARK 1 DOI 10.1128/MCB.24.17.7748-7757.2004 REMARK 1 REFERENCE 2 REMARK 1 AUTH X.B.QIU,S.L.MARKANT,J.YUAN,A.L.GOLDBERG REMARK 1 TITL NRDP1-MEDIATED DEGRADATION OF THE GIGANTIC IAP, BRUCE, IS A REMARK 1 TITL 2 NOVEL PATHWAY FOR TRIGGERING APOPTOSIS. REMARK 1 REF EMBO J. V. 23 800 2004 REMARK 1 REFN ISSN 0261-4189 REMARK 1 PMID 14765125 REMARK 1 DOI 10.1038/SJ.EMBOJ.7600075 REMARK 1 REFERENCE 3 REMARK 1 AUTH A.J.DIAMONTI,P.M.GUY,C.IVANOF,K.WONG,C.SWEENEY,K.L.CARRAWAY REMARK 1 TITL AN RBCC PROTEIN IMPLICATED IN MAINTENANCE OF STEADY-STATE REMARK 1 TITL 2 NEUREGULIN RECEPTOR LEVELS. REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 99 2866 2002 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 11867753 REMARK 1 DOI 10.1073/PNAS.052709799 REMARK 1 REFERENCE 4 REMARK 1 AUTH J.M.ABDULLAH,X.LI,R.G.NACHTMAN,R.JURECIC REMARK 1 TITL FLRF, A NOVEL EVOLUTIONARILY CONSERVED RING FINGER GENE, IS REMARK 1 TITL 2 DIFFERENTIALLY EXPRESSED IN MOUSE FETAL AND ADULT REMARK 1 TITL 3 HEMATOPOIETIC STEM CELLS AND PROGENITORS. REMARK 1 REF BLOOD CELLS MOL.DIS. V. 27 320 2001 REMARK 1 REFN ISSN 1079-9796 REMARK 1 PMID 11358394 REMARK 1 DOI 10.1006/BCMD.2001.0390 REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 10951 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 549 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.87 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.92 REMARK 3 REFLECTION IN BIN (WORKING SET) : 663 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.3950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1047 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 99 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.47000 REMARK 3 B22 (A**2) : 0.52000 REMARK 3 B33 (A**2) : -0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.137 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.143 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.088 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.882 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1067 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1448 ; 1.552 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 133 ; 5.659 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 50 ;39.217 ;24.200 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 184 ;13.178 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;18.452 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 161 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 812 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 471 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 752 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 75 ; 0.136 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 41 ; 0.203 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.150 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 686 ; 2.045 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1078 ; 2.510 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 435 ; 3.809 ; 5.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 370 ; 5.778 ; 7.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 184 A 191 REMARK 3 ORIGIN FOR THE GROUP (A): 23.6155 49.7889 28.8869 REMARK 3 T TENSOR REMARK 3 T11: 0.0577 T22: 0.0025 REMARK 3 T33: 0.0156 T12: 0.0084 REMARK 3 T13: 0.0096 T23: -0.0183 REMARK 3 L TENSOR REMARK 3 L11: 8.8100 L22: 2.6035 REMARK 3 L33: 2.7010 L12: 2.5347 REMARK 3 L13: -2.1403 L23: -1.9131 REMARK 3 S TENSOR REMARK 3 S11: -0.1008 S12: 0.0676 S13: 0.0002 REMARK 3 S21: -0.1107 S22: 0.0690 S23: 0.0201 REMARK 3 S31: 0.0183 S32: 0.1029 S33: 0.0318 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 192 A 198 REMARK 3 ORIGIN FOR THE GROUP (A): 30.5653 46.6213 29.9534 REMARK 3 T TENSOR REMARK 3 T11: 0.0221 T22: 0.0201 REMARK 3 T33: 0.0299 T12: 0.0066 REMARK 3 T13: -0.0164 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: 2.8648 L22: 9.4554 REMARK 3 L33: 4.0014 L12: 1.0758 REMARK 3 L13: 1.6755 L23: -1.4430 REMARK 3 S TENSOR REMARK 3 S11: 0.0532 S12: 0.2196 S13: -0.0176 REMARK 3 S21: -0.0952 S22: -0.0027 S23: -0.0063 REMARK 3 S31: 0.0648 S32: 0.1255 S33: -0.0505 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 199 A 205 REMARK 3 ORIGIN FOR THE GROUP (A): 28.8729 36.7599 28.0206 REMARK 3 T TENSOR REMARK 3 T11: 0.0466 T22: 0.0171 REMARK 3 T33: 0.0035 T12: 0.0145 REMARK 3 T13: -0.0043 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 4.7921 L22: 17.4182 REMARK 3 L33: 7.5784 L12: -0.6022 REMARK 3 L13: 2.3099 L23: 0.3428 REMARK 3 S TENSOR REMARK 3 S11: -0.1095 S12: -0.1559 S13: -0.0303 REMARK 3 S21: 0.5371 S22: 0.0132 S23: -0.4635 REMARK 3 S31: 0.1520 S32: 0.2912 S33: 0.0963 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 206 A 210 REMARK 3 ORIGIN FOR THE GROUP (A): 29.6237 26.5355 20.2231 REMARK 3 T TENSOR REMARK 3 T11: 0.0445 T22: 0.0229 REMARK 3 T33: 0.0414 T12: 0.0112 REMARK 3 T13: -0.0248 T23: 0.0088 REMARK 3 L TENSOR REMARK 3 L11: 10.6085 L22: 16.0199 REMARK 3 L33: 27.5745 L12: -12.8552 REMARK 3 L13: -16.1001 L23: 18.3316 REMARK 3 S TENSOR REMARK 3 S11: -0.2817 S12: 0.2591 S13: -0.2136 REMARK 3 S21: 0.5311 S22: -0.1189 S23: 0.1058 REMARK 3 S31: 0.9733 S32: -0.3075 S33: 0.4006 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 211 A 218 REMARK 3 ORIGIN FOR THE GROUP (A): 26.9468 27.9971 6.3042 REMARK 3 T TENSOR REMARK 3 T11: -0.0149 T22: 0.0365 REMARK 3 T33: -0.0306 T12: -0.0179 REMARK 3 T13: 0.0361 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 23.2979 L22: 20.7336 REMARK 3 L33: 7.3899 L12: -21.3079 REMARK 3 L13: 8.1147 L23: -6.2011 REMARK 3 S TENSOR REMARK 3 S11: 0.7963 S12: 1.0086 S13: -0.0691 REMARK 3 S21: -0.9149 S22: -0.8756 S23: -0.0467 REMARK 3 S31: 0.2827 S32: 0.6675 S33: 0.0794 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 219 A 222 REMARK 3 ORIGIN FOR THE GROUP (A): 16.9084 37.6684 5.4436 REMARK 3 T TENSOR REMARK 3 T11: -0.0026 T22: 0.1124 REMARK 3 T33: -0.0189 T12: 0.0001 REMARK 3 T13: -0.0094 T23: 0.0336 REMARK 3 L TENSOR REMARK 3 L11: 13.7574 L22: 6.8829 REMARK 3 L33: 15.7720 L12: 1.7117 REMARK 3 L13: -11.7915 L23: 4.6801 REMARK 3 S TENSOR REMARK 3 S11: -0.1172 S12: 0.5972 S13: 0.0801 REMARK 3 S21: -0.1178 S22: 0.1534 S23: 0.0791 REMARK 3 S31: -0.0550 S32: -1.1157 S33: -0.0362 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 223 A 237 REMARK 3 ORIGIN FOR THE GROUP (A): 14.9522 36.3416 18.7770 REMARK 3 T TENSOR REMARK 3 T11: 0.0248 T22: 0.0189 REMARK 3 T33: 0.0443 T12: -0.0196 REMARK 3 T13: 0.0097 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 5.9986 L22: 0.7618 REMARK 3 L33: 13.8242 L12: -0.6056 REMARK 3 L13: 5.9368 L23: -0.0732 REMARK 3 S TENSOR REMARK 3 S11: 0.0293 S12: -0.0527 S13: 0.0532 REMARK 3 S21: 0.0606 S22: -0.0841 S23: 0.0808 REMARK 3 S31: 0.1450 S32: -0.3218 S33: 0.0548 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 238 A 244 REMARK 3 ORIGIN FOR THE GROUP (A): 21.2045 43.9827 23.4995 REMARK 3 T TENSOR REMARK 3 T11: 0.0088 T22: -0.0058 REMARK 3 T33: 0.0417 T12: 0.0025 REMARK 3 T13: 0.0221 T23: -0.0235 REMARK 3 L TENSOR REMARK 3 L11: 1.3853 L22: 2.3932 REMARK 3 L33: 7.1817 L12: -1.1261 REMARK 3 L13: -1.2112 L23: -2.0233 REMARK 3 S TENSOR REMARK 3 S11: 0.0020 S12: -0.0147 S13: -0.0065 REMARK 3 S21: 0.0281 S22: -0.0016 S23: 0.0421 REMARK 3 S31: -0.0864 S32: -0.3776 S33: -0.0004 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 245 A 251 REMARK 3 ORIGIN FOR THE GROUP (A): 21.5214 43.3181 13.3797 REMARK 3 T TENSOR REMARK 3 T11: 0.0390 T22: 0.0005 REMARK 3 T33: 0.0471 T12: 0.0326 REMARK 3 T13: -0.0045 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 4.3752 L22: 1.5952 REMARK 3 L33: 9.9764 L12: 1.2414 REMARK 3 L13: 1.0462 L23: 2.9485 REMARK 3 S TENSOR REMARK 3 S11: 0.0959 S12: -0.0958 S13: 0.4379 REMARK 3 S21: 0.0138 S22: -0.1920 S23: 0.0231 REMARK 3 S31: -0.4084 S32: -0.3914 S33: 0.0961 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 252 A 255 REMARK 3 ORIGIN FOR THE GROUP (A): 23.4479 43.0781 6.0021 REMARK 3 T TENSOR REMARK 3 T11: 0.0370 T22: 0.0719 REMARK 3 T33: -0.0299 T12: 0.0348 REMARK 3 T13: 0.0155 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 10.5937 L22: 15.9808 REMARK 3 L33: 7.6730 L12: 0.7825 REMARK 3 L13: 8.3462 L23: 4.7967 REMARK 3 S TENSOR REMARK 3 S11: -0.2242 S12: -0.5055 S13: 0.5283 REMARK 3 S21: -0.1246 S22: 0.0493 S23: 0.4174 REMARK 3 S31: -0.3051 S32: -0.5000 S33: 0.1749 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 256 A 262 REMARK 3 ORIGIN FOR THE GROUP (A): 29.9565 41.5751 2.2407 REMARK 3 T TENSOR REMARK 3 T11: 0.0461 T22: 0.0214 REMARK 3 T33: 0.0259 T12: 0.0344 REMARK 3 T13: 0.0157 T23: 0.0383 REMARK 3 L TENSOR REMARK 3 L11: 9.5948 L22: 5.3132 REMARK 3 L33: 17.6145 L12: -2.6287 REMARK 3 L13: -0.1319 L23: 6.8294 REMARK 3 S TENSOR REMARK 3 S11: 0.0474 S12: -0.0727 S13: 0.5641 REMARK 3 S21: -0.2041 S22: -0.1216 S23: -0.2034 REMARK 3 S31: -0.4009 S32: -0.4973 S33: 0.0742 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 263 A 269 REMARK 3 ORIGIN FOR THE GROUP (A): 32.6003 35.3828 -1.0083 REMARK 3 T TENSOR REMARK 3 T11: 0.0700 T22: 0.0505 REMARK 3 T33: -0.0281 T12: -0.0062 REMARK 3 T13: 0.0161 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 15.2077 L22: 4.4438 REMARK 3 L33: 6.9429 L12: -3.4377 REMARK 3 L13: 2.8541 L23: -2.7291 REMARK 3 S TENSOR REMARK 3 S11: 0.0985 S12: 0.5880 S13: -0.1411 REMARK 3 S21: -0.2628 S22: 0.0691 S23: 0.0031 REMARK 3 S31: 0.1507 S32: -0.3236 S33: -0.1676 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 270 A 275 REMARK 3 ORIGIN FOR THE GROUP (A): 36.8074 32.3054 7.6527 REMARK 3 T TENSOR REMARK 3 T11: 0.0479 T22: 0.0036 REMARK 3 T33: 0.0420 T12: -0.0134 REMARK 3 T13: 0.0124 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 4.2576 L22: 1.5102 REMARK 3 L33: 10.7253 L12: -2.4936 REMARK 3 L13: 0.2919 L23: -0.9010 REMARK 3 S TENSOR REMARK 3 S11: 0.0473 S12: 0.1468 S13: 0.1596 REMARK 3 S21: -0.1474 S22: 0.0975 S23: -0.1905 REMARK 3 S31: 0.0189 S32: 0.2856 S33: -0.1448 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 276 A 281 REMARK 3 ORIGIN FOR THE GROUP (A): 26.6282 30.3676 19.2596 REMARK 3 T TENSOR REMARK 3 T11: 0.0359 T22: 0.0163 REMARK 3 T33: 0.0076 T12: 0.0033 REMARK 3 T13: -0.0199 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 25.8287 L22: 4.8690 REMARK 3 L33: 3.5485 L12: 6.8507 REMARK 3 L13: -3.7155 L23: -1.9418 REMARK 3 S TENSOR REMARK 3 S11: 0.1086 S12: -0.1371 S13: -0.8607 REMARK 3 S21: 0.0676 S22: -0.0613 S23: -0.2141 REMARK 3 S31: 0.2584 S32: -0.1823 S33: -0.0474 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 282 A 293 REMARK 3 ORIGIN FOR THE GROUP (A): 27.9793 34.2974 17.3636 REMARK 3 T TENSOR REMARK 3 T11: 0.0329 T22: 0.0346 REMARK 3 T33: 0.0212 T12: 0.0179 REMARK 3 T13: -0.0027 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 7.2004 L22: 3.2164 REMARK 3 L33: 0.7538 L12: 3.0409 REMARK 3 L13: 0.2438 L23: 0.3710 REMARK 3 S TENSOR REMARK 3 S11: 0.0456 S12: -0.2108 S13: 0.0370 REMARK 3 S21: 0.0896 S22: 0.0278 S23: -0.1901 REMARK 3 S31: 0.0439 S32: 0.0649 S33: -0.0734 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 294 A 300 REMARK 3 ORIGIN FOR THE GROUP (A): 38.3716 41.3111 12.1031 REMARK 3 T TENSOR REMARK 3 T11: 0.0570 T22: -0.0254 REMARK 3 T33: 0.0770 T12: -0.0380 REMARK 3 T13: 0.0331 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 15.8619 L22: 7.2159 REMARK 3 L33: 17.8230 L12: -8.2391 REMARK 3 L13: 10.3767 L23: -5.9106 REMARK 3 S TENSOR REMARK 3 S11: -0.0747 S12: 0.1024 S13: 0.9752 REMARK 3 S21: 0.0265 S22: -0.1707 S23: -0.5665 REMARK 3 S31: -0.9193 S32: 0.2696 S33: 0.2454 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 301 A 304 REMARK 3 ORIGIN FOR THE GROUP (A): 31.5758 45.2675 15.4688 REMARK 3 T TENSOR REMARK 3 T11: 0.0313 T22: -0.0007 REMARK 3 T33: 0.0571 T12: -0.0188 REMARK 3 T13: 0.0218 T23: -0.0485 REMARK 3 L TENSOR REMARK 3 L11: 31.9843 L22: 21.6882 REMARK 3 L33: 47.4851 L12: -16.8025 REMARK 3 L13: -38.7912 L23: 21.9100 REMARK 3 S TENSOR REMARK 3 S11: 1.2079 S12: -0.1492 S13: 1.3553 REMARK 3 S21: -0.8761 S22: 0.3045 S23: -1.0326 REMARK 3 S31: -1.8322 S32: 0.3630 S33: -1.5124 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 305 A 308 REMARK 3 ORIGIN FOR THE GROUP (A): 26.4191 38.1199 13.1151 REMARK 3 T TENSOR REMARK 3 T11: 0.0450 T22: 0.0251 REMARK 3 T33: 0.0292 T12: -0.0067 REMARK 3 T13: -0.0117 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 5.0815 L22: 13.9650 REMARK 3 L33: 6.9254 L12: 8.1220 REMARK 3 L13: 5.4954 L23: 7.8007 REMARK 3 S TENSOR REMARK 3 S11: -0.0474 S12: 0.2675 S13: -0.1091 REMARK 3 S21: -0.3688 S22: 0.0083 S23: -0.3965 REMARK 3 S31: -0.3194 S32: 0.3868 S33: 0.0391 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 309 A 312 REMARK 3 ORIGIN FOR THE GROUP (A): 22.1128 28.2042 8.1873 REMARK 3 T TENSOR REMARK 3 T11: 0.0356 T22: 0.0180 REMARK 3 T33: 0.0088 T12: -0.0190 REMARK 3 T13: -0.0133 T23: -0.0242 REMARK 3 L TENSOR REMARK 3 L11: 8.7620 L22: 7.2956 REMARK 3 L33: 0.3109 L12: -1.4971 REMARK 3 L13: -1.1754 L23: -0.8378 REMARK 3 S TENSOR REMARK 3 S11: -0.3052 S12: 0.3152 S13: -0.4727 REMARK 3 S21: -0.4697 S22: 0.3574 S23: 0.1723 REMARK 3 S31: 0.2325 S32: -0.0382 S33: -0.0523 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 313 A 317 REMARK 3 ORIGIN FOR THE GROUP (A): 27.9287 22.8548 16.2622 REMARK 3 T TENSOR REMARK 3 T11: 0.0290 T22: -0.0210 REMARK 3 T33: 0.0455 T12: -0.0107 REMARK 3 T13: 0.0109 T23: 0.0173 REMARK 3 L TENSOR REMARK 3 L11: 19.5090 L22: 16.0087 REMARK 3 L33: 53.1618 L12: -17.6722 REMARK 3 L13: 21.7388 L23: -19.7952 REMARK 3 S TENSOR REMARK 3 S11: -0.0935 S12: -0.6260 S13: -0.8525 REMARK 3 S21: 0.6384 S22: 0.3789 S23: -0.2872 REMARK 3 S31: 0.4518 S32: 1.0382 S33: -0.2853 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2FZP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-FEB-06. REMARK 100 THE DEPOSITION ID IS D_1000036505. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00769 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12100 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.870 REMARK 200 RESOLUTION RANGE LOW (A) : 27.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.9700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.65300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.520 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8M (NH4)2SO4, 0.1M HEPES PH 7.0,0.2M REMARK 280 NACL, 0.001M DTT, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.39800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.16950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.13100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.16950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.39800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 22.13100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 174 REMARK 465 GLY A 175 REMARK 465 SER A 176 REMARK 465 SER A 177 REMARK 465 HIS A 178 REMARK 465 HIS A 179 REMARK 465 HIS A 180 REMARK 465 HIS A 181 REMARK 465 HIS A 182 REMARK 465 HIS A 183 DBREF 2FZP A 193 317 UNP Q9H4P4 RNF41_HUMAN 193 317 SEQADV 2FZP MET A 174 UNP Q9H4P4 CLONING ARTIFACT SEQADV 2FZP GLY A 175 UNP Q9H4P4 CLONING ARTIFACT SEQADV 2FZP SER A 176 UNP Q9H4P4 CLONING ARTIFACT SEQADV 2FZP SER A 177 UNP Q9H4P4 CLONING ARTIFACT SEQADV 2FZP HIS A 178 UNP Q9H4P4 CLONING ARTIFACT SEQADV 2FZP HIS A 179 UNP Q9H4P4 CLONING ARTIFACT SEQADV 2FZP HIS A 180 UNP Q9H4P4 CLONING ARTIFACT SEQADV 2FZP HIS A 181 UNP Q9H4P4 CLONING ARTIFACT SEQADV 2FZP HIS A 182 UNP Q9H4P4 CLONING ARTIFACT SEQADV 2FZP HIS A 183 UNP Q9H4P4 CLONING ARTIFACT SEQADV 2FZP SER A 184 UNP Q9H4P4 CLONING ARTIFACT SEQADV 2FZP SER A 185 UNP Q9H4P4 CLONING ARTIFACT SEQADV 2FZP GLY A 186 UNP Q9H4P4 CLONING ARTIFACT SEQADV 2FZP LEU A 187 UNP Q9H4P4 CLONING ARTIFACT SEQADV 2FZP VAL A 188 UNP Q9H4P4 CLONING ARTIFACT SEQADV 2FZP PRO A 189 UNP Q9H4P4 CLONING ARTIFACT SEQADV 2FZP ARG A 190 UNP Q9H4P4 CLONING ARTIFACT SEQADV 2FZP GLY A 191 UNP Q9H4P4 CLONING ARTIFACT SEQADV 2FZP SER A 192 UNP Q9H4P4 CLONING ARTIFACT SEQRES 1 A 144 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 144 LEU VAL PRO ARG GLY SER THR ILE GLU TYR ASN GLU ILE SEQRES 3 A 144 LEU GLU TRP VAL ASN SER LEU GLN PRO ALA ARG VAL THR SEQRES 4 A 144 ARG TRP GLY GLY MET ILE SER THR PRO ASP ALA VAL LEU SEQRES 5 A 144 GLN ALA VAL ILE LYS ARG SER LEU VAL GLU SER GLY CYS SEQRES 6 A 144 PRO ALA SER ILE VAL ASN GLU LEU ILE GLU ASN ALA HIS SEQRES 7 A 144 GLU ARG SER TRP PRO GLN GLY LEU ALA THR LEU GLU THR SEQRES 8 A 144 ARG GLN MET ASN ARG ARG TYR TYR GLU ASN TYR VAL ALA SEQRES 9 A 144 LYS ARG ILE PRO GLY LYS GLN ALA VAL VAL VAL MET ALA SEQRES 10 A 144 CYS GLU ASN GLN HIS MET GLY ASP ASP MET VAL GLN GLU SEQRES 11 A 144 PRO GLY LEU VAL MET ILE PHE ALA HIS GLY VAL GLU GLU SEQRES 12 A 144 ILE FORMUL 2 HOH *99(H2 O) HELIX 1 1 SER A 192 LEU A 206 1 15 HELIX 2 2 ARG A 213 GLY A 215 5 3 HELIX 3 3 ASP A 222 SER A 236 1 15 HELIX 4 4 PRO A 239 ASN A 249 1 11 HELIX 5 5 ALA A 250 TRP A 255 5 6 HELIX 6 6 THR A 261 ASN A 268 1 8 HELIX 7 7 ARG A 270 TYR A 275 5 6 HELIX 8 8 CYS A 291 ASN A 293 5 3 SHEET 1 A 6 MET A 217 ILE A 218 0 SHEET 2 A 6 GLY A 305 PHE A 310 -1 O ILE A 309 N ILE A 218 SHEET 3 A 6 ALA A 285 MET A 289 -1 N VAL A 288 O LEU A 306 SHEET 4 A 6 ALA A 277 ARG A 279 -1 N LYS A 278 O VAL A 287 SHEET 5 A 6 GLN A 207 VAL A 211 -1 N GLN A 207 O ARG A 279 SHEET 6 A 6 VAL A 314 GLU A 316 -1 O GLU A 315 N ARG A 210 CISPEP 1 GLU A 303 PRO A 304 0 0.37 CRYST1 34.796 44.262 88.339 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028739 0.000000 0.000000 0.00000 SCALE2 0.000000 0.022593 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011320 0.00000