HEADER LIGASE 17-FEB-06 2G36 TITLE CRYSTAL STRUCTURE OF TRYPTOPHANYL-TRNA SYNTHETASE (EC 6.1.1.2) TITLE 2 (TRYPTOPHAN-TRNA LIGASE)(TRPRS) (TM0492) FROM THERMOTOGA MARITIMA AT TITLE 3 2.50 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRYPTOPHANYL-TRNA SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TRYPTOPHAN-TRNA LIGASE, TRPRS; COMPND 5 EC: 6.1.1.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TRPS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TM0492, TRYPTOPHANYL-TRNA SYNTHETASE (EC 6.1.1.2) (TRYPTOPHAN-TRNA KEYWDS 2 LIGASE)(TRPRS), STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 8 03-APR-24 2G36 1 REMARK REVDAT 7 25-JAN-23 2G36 1 REMARK SEQADV LINK REVDAT 6 25-OCT-17 2G36 1 REMARK REVDAT 5 13-JUL-11 2G36 1 VERSN REVDAT 4 23-MAR-11 2G36 1 JRNL REVDAT 3 24-MAR-09 2G36 1 LINK REVDAT 2 24-FEB-09 2G36 1 VERSN REVDAT 1 28-MAR-06 2G36 0 JRNL AUTH G.W.HAN,X.L.YANG,D.MCMULLAN,Y.E.CHONG,S.S.KRISHNA,C.L.RIFE, JRNL AUTH 2 D.WEEKES,S.M.BRITTAIN,P.ABDUBEK,E.AMBING,T.ASTAKHOVA, JRNL AUTH 3 H.L.AXELROD,D.CARLTON,J.CARUTHERS,H.J.CHIU,T.CLAYTON,L.DUAN, JRNL AUTH 4 J.FEUERHELM,J.C.GRANT,S.K.GRZECHNIK,L.JAROSZEWSKI,K.K.JIN, JRNL AUTH 5 H.E.KLOCK,M.W.KNUTH,A.KUMAR,D.MARCIANO,M.D.MILLER,A.T.MORSE, JRNL AUTH 6 E.NIGOGHOSSIAN,L.OKACH,J.PAULSEN,R.REYES,H.VAN DEN BEDEM, JRNL AUTH 7 A.WHITE,G.WOLF,Q.XU,K.O.HODGSON,J.WOOLEY,A.M.DEACON, JRNL AUTH 8 A.GODZIK,S.A.LESLEY,M.A.ELSLIGER,P.SCHIMMEL,I.A.WILSON JRNL TITL STRUCTURE OF A TRYPTOPHANYL-TRNA SYNTHETASE CONTAINING AN JRNL TITL 2 IRON-SULFUR CLUSTER. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 66 1326 2010 JRNL REFN ESSN 1744-3091 JRNL PMID 20944229 JRNL DOI 10.1107/S1744309110037619 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 17623 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 894 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1213 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.3270 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.4630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2547 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 56 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 49.41 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.09000 REMARK 3 B22 (A**2) : -1.52000 REMARK 3 B33 (A**2) : -0.57000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.324 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.259 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.196 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.016 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2650 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1811 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3601 ; 1.603 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4395 ; 1.012 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 324 ; 3.256 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 118 ;33.224 ;23.305 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 457 ;11.769 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;14.102 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 395 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2917 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 544 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 651 ; 0.226 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1876 ; 0.191 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1345 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1225 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 71 ; 0.158 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 7 ; 0.282 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 32 ; 0.170 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.162 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1703 ; 1.704 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 650 ; 0.328 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2621 ; 2.751 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1140 ; 4.903 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 967 ; 6.681 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 112 REMARK 3 ORIGIN FOR THE GROUP (A): 17.1597 60.0352 2.6301 REMARK 3 T TENSOR REMARK 3 T11: -0.2319 T22: -0.1924 REMARK 3 T33: -0.1401 T12: 0.0687 REMARK 3 T13: -0.0166 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 1.8135 L22: 4.2673 REMARK 3 L33: 1.4552 L12: 0.9194 REMARK 3 L13: 0.1771 L23: -0.0998 REMARK 3 S TENSOR REMARK 3 S11: -0.0069 S12: -0.1954 S13: -0.3373 REMARK 3 S21: 0.0655 S22: 0.0903 S23: -0.0994 REMARK 3 S31: 0.1539 S32: 0.1612 S33: -0.0834 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 120 A 196 REMARK 3 ORIGIN FOR THE GROUP (A): 24.4836 63.4264 9.4529 REMARK 3 T TENSOR REMARK 3 T11: -0.0796 T22: -0.0158 REMARK 3 T33: -0.1731 T12: 0.0387 REMARK 3 T13: -0.0890 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.2449 L22: 3.6450 REMARK 3 L33: 0.1420 L12: -0.5585 REMARK 3 L13: -0.0514 L23: -0.4407 REMARK 3 S TENSOR REMARK 3 S11: -0.0542 S12: -0.0888 S13: -0.0269 REMARK 3 S21: 0.3391 S22: 0.0589 S23: -0.1949 REMARK 3 S31: 0.1218 S32: 0.1664 S33: -0.0047 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 197 A 400 REMARK 3 ORIGIN FOR THE GROUP (A): 19.0048 41.4477 1.7400 REMARK 3 T TENSOR REMARK 3 T11: 0.0985 T22: 0.0390 REMARK 3 T33: 0.0236 T12: 0.0292 REMARK 3 T13: -0.0199 T23: 0.0329 REMARK 3 L TENSOR REMARK 3 L11: 0.6630 L22: 4.2801 REMARK 3 L33: 0.5379 L12: -1.3631 REMARK 3 L13: -0.0895 L23: 0.3135 REMARK 3 S TENSOR REMARK 3 S11: -0.0348 S12: -0.0275 S13: -0.2607 REMARK 3 S21: -0.1106 S22: 0.1371 S23: 0.4635 REMARK 3 S31: 0.2372 S32: 0.1200 S33: -0.1023 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 (1) HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 (2) IN THE ACTIVE SITE, L-TRYPTOPHAN WAS MODELLED REMARK 3 BASED ON ELECTRON DENSITY. REMARK 3 (3) A [4FE-4S] IS COORDINATED TO THE SIDE CHAINS OF REMARK 3 CYS 236,259,266 AND 269. BASED ON ELECTRON DENSITY REMARK 3 AND ITS GEOMETRY, IRON SULFUR CLUSTER IS VERY REMARK 3 CONCLUSIVE. X-RAY FLUORESCENCE EXPERIMENTS CONFIRMED REMARK 3 THE PRESENCE OF IRON. REMARK 3 (4) THE RESIDUES OF A113 TO A119 WERE NOT VISIBLE REMARK 3 IN THE ELECTRON DENSITY MAPS. REMARK 4 REMARK 4 2G36 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-FEB-06. REMARK 100 THE DEPOSITION ID IS D_1000036630. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17636 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 29.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 200 DATA REDUNDANCY : 1.930 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.86 REMARK 200 R MERGE FOR SHELL (I) : 0.47000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1YI8B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12.5% PEG-3000, 0.25M MGCL2, 0.1M REMARK 280 CACODYLATE PH 6.5, VAPOR DIFFUSION,SITTING DROP,NANODROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.53500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 26.53500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 61.44500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 76.36500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 61.44500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 76.36500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 26.53500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 61.44500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 76.36500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 26.53500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 61.44500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 76.36500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT REMARK 300 SCATTERING SUPPORTS THE ASSIGNMENT OF A DIMER AS REMARK 300 A BIOLOGICALLY SIGNIFICANT OLIGIMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -85.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 152.73000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 LYS A 113 REMARK 465 SER A 114 REMARK 465 GLU A 115 REMARK 465 LEU A 116 REMARK 465 ASN A 117 REMARK 465 TYR A 118 REMARK 465 LYS A 119 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 12 CE NZ REMARK 470 LYS A 27 CE NZ REMARK 470 GLU A 74 CG CD OE1 OE2 REMARK 470 THR A 108 OG1 CG2 REMARK 470 LYS A 110 CD CE NZ REMARK 470 GLU A 111 CD OE1 OE2 REMARK 470 GLU A 149 CD OE1 OE2 REMARK 470 ASP A 150 CG OD1 OD2 REMARK 470 ARG A 182 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 185 CD CE NZ REMARK 470 LYS A 193 CE NZ REMARK 470 LYS A 209 CD CE NZ REMARK 470 GLU A 210 CD OE1 OE2 REMARK 470 GLU A 212 CD OE1 OE2 REMARK 470 GLN A 213 CD OE1 NE2 REMARK 470 LYS A 253 CE NZ REMARK 470 GLU A 257 CG CD OE1 OE2 REMARK 470 LYS A 271 NZ REMARK 470 LYS A 307 CE NZ REMARK 470 LYS A 315 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 129 N TRP A 401 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 109 -83.59 -82.12 REMARK 500 TYR A 169 -97.25 -122.15 REMARK 500 LYS A 193 154.40 -49.07 REMARK 500 GLU A 205 34.82 -93.37 REMARK 500 ASN A 235 31.04 -99.38 REMARK 500 HIS A 296 -16.99 93.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 400 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 236 SG REMARK 620 2 SF4 A 400 S1 117.3 REMARK 620 3 SF4 A 400 S3 107.6 108.3 REMARK 620 4 SF4 A 400 S4 110.8 107.4 104.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 400 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 259 SG REMARK 620 2 SF4 A 400 S2 108.3 REMARK 620 3 SF4 A 400 S3 111.6 109.0 REMARK 620 4 SF4 A 400 S4 118.4 105.1 103.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 400 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 266 SG REMARK 620 2 SF4 A 400 S1 107.8 REMARK 620 3 SF4 A 400 S2 113.4 103.9 REMARK 620 4 SF4 A 400 S3 114.9 107.0 109.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 400 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 269 SG REMARK 620 2 SF4 A 400 S1 107.2 REMARK 620 3 SF4 A 400 S2 108.7 105.5 REMARK 620 4 SF4 A 400 S4 123.1 106.3 104.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRP A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 282365 RELATED DB: TARGETDB DBREF 2G36 A 1 328 UNP Q9WYW2 SYW_THEMA 1 328 SEQADV 2G36 MET A -11 UNP Q9WYW2 EXPRESSION TAG SEQADV 2G36 GLY A -10 UNP Q9WYW2 EXPRESSION TAG SEQADV 2G36 SER A -9 UNP Q9WYW2 EXPRESSION TAG SEQADV 2G36 ASP A -8 UNP Q9WYW2 EXPRESSION TAG SEQADV 2G36 LYS A -7 UNP Q9WYW2 EXPRESSION TAG SEQADV 2G36 ILE A -6 UNP Q9WYW2 EXPRESSION TAG SEQADV 2G36 HIS A -5 UNP Q9WYW2 EXPRESSION TAG SEQADV 2G36 HIS A -4 UNP Q9WYW2 EXPRESSION TAG SEQADV 2G36 HIS A -3 UNP Q9WYW2 EXPRESSION TAG SEQADV 2G36 HIS A -2 UNP Q9WYW2 EXPRESSION TAG SEQADV 2G36 HIS A -1 UNP Q9WYW2 EXPRESSION TAG SEQADV 2G36 HIS A 0 UNP Q9WYW2 EXPRESSION TAG SEQRES 1 A 340 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 A 340 ARG ILE LEU SER GLY MET ARG PRO THR GLY LYS LEU HIS SEQRES 3 A 340 ILE GLY HIS LEU VAL GLY ALA LEU GLU ASN TRP VAL LYS SEQRES 4 A 340 LEU GLN GLU GLU GLY ASN GLU CYS PHE TYR PHE VAL ALA SEQRES 5 A 340 ASP TRP HIS ALA LEU THR THR HIS TYR ASP ASP VAL SER SEQRES 6 A 340 LYS LEU LYS GLU TYR THR ARG ASP LEU VAL ARG GLY PHE SEQRES 7 A 340 LEU ALA CYS GLY ILE ASP PRO GLU LYS SER VAL ILE PHE SEQRES 8 A 340 VAL GLN SER GLY VAL LYS GLU HIS ALA GLU LEU ALA LEU SEQRES 9 A 340 LEU PHE SER MET ILE VAL SER VAL SER ARG LEU GLU ARG SEQRES 10 A 340 VAL PRO THR TYR LYS GLU ILE LYS SER GLU LEU ASN TYR SEQRES 11 A 340 LYS ASP LEU SER THR ALA GLY PHE LEU ILE TYR PRO VAL SEQRES 12 A 340 LEU GLN ALA ALA ASP ILE LEU ILE TYR LYS ALA GLU GLY SEQRES 13 A 340 VAL PRO VAL GLY GLU ASP GLN VAL TYR HIS ILE GLU LEU SEQRES 14 A 340 THR ARG GLU ILE ALA ARG ARG PHE ASN TYR LEU TYR ASP SEQRES 15 A 340 GLU VAL PHE PRO GLU PRO GLU ALA ILE LEU SER ARG VAL SEQRES 16 A 340 PRO LYS LEU PRO GLY THR ASP GLY ARG LYS MET SER LYS SEQRES 17 A 340 SER TYR GLY ASN ILE ILE ASN LEU GLU ILE SER GLU LYS SEQRES 18 A 340 GLU LEU GLU GLN THR ILE LEU ARG MET MET THR ASP PRO SEQRES 19 A 340 ALA ARG VAL ARG ARG SER ASP PRO GLY ASN PRO GLU ASN SEQRES 20 A 340 CYS PRO VAL TRP LYS TYR HIS GLN ALA PHE ASP ILE SER SEQRES 21 A 340 GLU GLU GLU SER LYS TRP VAL TRP GLU GLY CYS THR THR SEQRES 22 A 340 ALA SER ILE GLY CYS VAL ASP CYS LYS LYS LEU LEU LEU SEQRES 23 A 340 LYS ASN MET LYS ARG LYS LEU ALA PRO ILE TRP GLU ASN SEQRES 24 A 340 PHE ARG LYS ILE ASP GLU ASP PRO HIS TYR VAL ASP ASP SEQRES 25 A 340 VAL ILE MET GLU GLY THR LYS LYS ALA ARG GLU VAL ALA SEQRES 26 A 340 ALA LYS THR MET GLU GLU VAL ARG ARG ALA MET ASN LEU SEQRES 27 A 340 MET PHE HET SF4 A 400 8 HET TRP A 401 15 HETNAM SF4 IRON/SULFUR CLUSTER HETNAM TRP TRYPTOPHAN FORMUL 2 SF4 FE4 S4 FORMUL 3 TRP C11 H12 N2 O2 FORMUL 4 HOH *56(H2 O) HELIX 1 1 HIS A 14 GLY A 20 1 7 HELIX 2 2 GLY A 20 GLU A 31 1 12 HELIX 3 3 ALA A 40 TYR A 49 1 10 HELIX 4 4 LYS A 54 CYS A 69 1 16 HELIX 5 5 SER A 82 VAL A 84 5 3 HELIX 6 6 LYS A 85 MET A 96 1 12 HELIX 7 7 SER A 99 ARG A 105 1 7 HELIX 8 8 VAL A 106 GLU A 111 1 6 HELIX 9 9 THR A 123 ILE A 128 1 6 HELIX 10 10 ILE A 128 ILE A 139 1 12 HELIX 11 11 GLY A 148 ASP A 150 5 3 HELIX 12 12 GLN A 151 TYR A 169 1 19 HELIX 13 13 SER A 195 GLY A 199 5 5 HELIX 14 14 SER A 207 ARG A 217 1 11 HELIX 15 15 ASN A 232 ASN A 235 5 4 HELIX 16 16 CYS A 236 PHE A 245 1 10 HELIX 17 17 SER A 248 THR A 261 1 14 HELIX 18 18 GLY A 265 ASP A 294 1 30 HELIX 19 19 HIS A 296 MET A 324 1 29 SHEET 1 A 3 ARG A 2 MET A 7 0 SHEET 2 A 3 GLU A 34 VAL A 39 1 O GLU A 34 N ILE A 3 SHEET 3 A 3 VAL A 77 VAL A 80 1 O VAL A 77 N CYS A 35 SHEET 1 B 2 GLY A 144 VAL A 147 0 SHEET 2 B 2 GLU A 177 LEU A 180 1 O ILE A 179 N VAL A 145 LINK SG CYS A 236 FE2 SF4 A 400 1555 1555 2.29 LINK SG CYS A 259 FE1 SF4 A 400 1555 1555 2.34 LINK SG CYS A 266 FE4 SF4 A 400 1555 1555 2.30 LINK SG CYS A 269 FE3 SF4 A 400 1555 1555 2.30 SITE 1 AC1 8 THR A 220 ASP A 221 ARG A 224 CYS A 236 SITE 2 AC1 8 VAL A 238 CYS A 259 CYS A 266 CYS A 269 SITE 1 AC2 12 LEU A 4 SER A 5 GLY A 6 ARG A 8 SITE 2 AC2 12 HIS A 43 TYR A 129 GLN A 133 ASP A 136 SITE 3 AC2 12 ILE A 137 VAL A 145 GLN A 151 HOH A 411 CRYST1 122.890 152.730 53.070 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008140 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006550 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018840 0.00000