HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 01-MAR-06 2G7U TITLE 2.3 A STRUCTURE OF PUTATIVE CATECHOL DEGRADATIVE OPERON REGULATOR FROM TITLE 2 RHODOCOCCUS SP. RHA1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOCOCCUS SP.; SOURCE 3 ORGANISM_TAXID: 101510; SOURCE 4 STRAIN: RHA1; SOURCE 5 GENE: RHA05304; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RP; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P15TV LIC KEYWDS TRANSCRIPTIONAL REGULATOR, ICLR FAMILY, STRUCTURAL GENOMICS, MCSG, KEYWDS 2 PSI, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR H.ZHENG,T.SKARINA,M.CHRUSZCZ,M.CYMBOROWSKI,M.GRABOWSKI,O.ONOPRIYENKO, AUTHOR 2 A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK,W.MINOR,MIDWEST CENTER FOR AUTHOR 3 STRUCTURAL GENOMICS (MCSG) REVDAT 6 20-NOV-24 2G7U 1 REMARK REVDAT 5 13-APR-22 2G7U 1 AUTHOR JRNL LINK REVDAT 4 05-OCT-11 2G7U 1 AUTHOR REVDAT 3 13-JUL-11 2G7U 1 VERSN REVDAT 2 24-FEB-09 2G7U 1 VERSN REVDAT 1 04-APR-06 2G7U 0 JRNL AUTH H.ZHENG,T.SKARINA,M.CHRUSZCZ,M.CYMBOROWSKI,M.GRABOWSKI, JRNL AUTH 2 O.ONOPRIYENKO,A.SAVCHENKO,A.EDWARDS,W.MINOR JRNL TITL 2.3 A STRUCTURE OF PUTATIVE CATECHOL DEGRADATIVE OPERON JRNL TITL 2 REGULATOR FROM RHODOCOCCUS SP. RHA1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 93.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 48253 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2578 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3525 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2060 REMARK 3 BIN FREE R VALUE SET COUNT : 169 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7339 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 539 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.18000 REMARK 3 B22 (A**2) : -1.75000 REMARK 3 B33 (A**2) : 1.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.289 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.219 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.160 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.650 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7453 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10142 ; 1.347 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 993 ; 5.956 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 282 ;31.987 ;22.766 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1185 ;16.012 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 71 ;18.267 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1218 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5579 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3634 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5277 ; 0.292 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 531 ; 0.164 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 59 ; 0.227 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.199 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5077 ; 2.234 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7896 ; 2.773 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2640 ; 5.718 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2246 ; 8.227 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2G7U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000036797. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918, 0.97934 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : SI 111 CHANNEL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50831 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 93.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 33.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.50 REMARK 200 R MERGE FOR SHELL (I) : 0.47600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.880 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXD, MLPHARE, DM, SOLVE, RESOLVE, CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 0.2M LI SULPHATE, 0.1M REMARK 280 BIS-TRIS, CRYO CONDITION IS 8/8/8% (SUCR,GLYCER,550MME)IN MAG. REMARK 280 SOL., PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.18000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.18000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 48.20350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 93.26000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 48.20350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 93.26000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.18000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 48.20350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 93.26000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 63.18000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 48.20350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 93.26000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER, THERE ARE TWO DIMERS IN REMARK 300 AN ASYMMETRIC UNIT. CHAIN A AND B FORMS A DIMER, CHAIN C AND D REMARK 300 FORMS ANOTHER DIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 29590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 78220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -188.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 96.40700 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 63.18000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -87.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLU A 3 REMARK 465 SER A 4 REMARK 465 GLY A 256 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 GLU B 3 REMARK 465 SER B 4 REMARK 465 ASP B 5 REMARK 465 GLY B 256 REMARK 465 GLY C 0 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 GLU C 3 REMARK 465 SER C 4 REMARK 465 ASP C 5 REMARK 465 ARG C 6 REMARK 465 ASP C 7 REMARK 465 TYR C 8 REMARK 465 GLY D 0 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 GLU D 3 REMARK 465 SER D 4 REMARK 465 ASP D 5 REMARK 465 ARG D 6 REMARK 465 ASP D 7 REMARK 465 TYR D 8 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN C 10 CG CD OE1 NE2 REMARK 470 ILE C 12 CG2 CD1 REMARK 470 ARG C 46 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 54 CD CE NZ REMARK 470 GLN D 10 CG CD OE1 NE2 REMARK 470 ARG D 14 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 46 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 23 -163.97 -162.15 REMARK 500 ASN A 28 56.75 -143.28 REMARK 500 ASP A 210 -166.49 -107.01 REMARK 500 GLN B 165 155.79 -44.28 REMARK 500 ASP C 23 -167.52 -163.15 REMARK 500 ARG C 26 69.61 -115.52 REMARK 500 MSE C 125 15.29 -140.09 REMARK 500 ARG D 26 78.53 -116.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC6051 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 NO DATABASE REFERENCE WAS AVAILABLE AT THE TIME OF REMARK 999 PROCESSING FOR THIS STRUCTURE. DBREF 2G7U A 1 256 UNP O33539 O33539_RHOOP 1 256 DBREF 2G7U B 1 256 UNP O33539 O33539_RHOOP 1 256 DBREF 2G7U C 1 256 UNP O33539 O33539_RHOOP 1 256 DBREF 2G7U D 1 256 UNP O33539 O33539_RHOOP 1 256 SEQRES 1 A 257 GLY MET THR GLU SER ASP ARG ASP TYR ILE GLN SER ILE SEQRES 2 A 257 GLU ARG GLY PHE ALA VAL LEU LEU ALA PHE ASP ALA GLN SEQRES 3 A 257 ARG PRO ASN PRO THR LEU ALA GLU LEU ALA THR GLU ALA SEQRES 4 A 257 GLY LEU SER ARG PRO ALA VAL ARG ARG ILE LEU LEU THR SEQRES 5 A 257 LEU GLN LYS LEU GLY TYR VAL ALA GLY SER GLY GLY ARG SEQRES 6 A 257 TRP SER LEU THR PRO ARG VAL LEU SER ILE GLY GLN HIS SEQRES 7 A 257 TYR SER GLU SER HIS ALA LEU ILE GLU ALA ALA MSE PRO SEQRES 8 A 257 ARG LEU LEU GLU VAL ALA GLU LYS THR GLN GLU SER ALA SEQRES 9 A 257 SER LEU GLY VAL LEU ASP GLY ALA ASP VAL VAL TYR ALA SEQRES 10 A 257 ALA ARG VAL PRO VAL ARG ARG ILE MSE SER ILE ASN VAL SEQRES 11 A 257 SER VAL GLY THR ARG VAL PRO ALA TYR ALA THR SER MSE SEQRES 12 A 257 GLY ARG ALA LEU LEU ALA TRP ALA PRO ALA ASP VAL VAL SEQRES 13 A 257 GLU ARG VAL VAL ALA GLU SER THR PHE GLN LYS LEU GLY SEQRES 14 A 257 PRO GLU THR ILE GLY THR ALA ALA GLU LEU GLU ARG GLU SEQRES 15 A 257 LEU ALA LYS VAL ARG GLU GLN GLY PHE ALA LEU THR SER SEQRES 16 A 257 GLU GLU LEU GLU LYS GLY LEU ILE SER LEU ALA ALA PRO SEQRES 17 A 257 VAL HIS ASP ALA GLY GLY THR VAL VAL GLY VAL VAL ALA SEQRES 18 A 257 CYS SER THR SER SER ALA ARG ASN THR PRO ALA GLN PHE SEQRES 19 A 257 ARG GLU GLN ALA VAL PRO CYS VAL LEU ALA ALA ALA ALA SEQRES 20 A 257 ALA LEU SER ALA ASP MSE GLY PHE ALA GLY SEQRES 1 B 257 GLY MET THR GLU SER ASP ARG ASP TYR ILE GLN SER ILE SEQRES 2 B 257 GLU ARG GLY PHE ALA VAL LEU LEU ALA PHE ASP ALA GLN SEQRES 3 B 257 ARG PRO ASN PRO THR LEU ALA GLU LEU ALA THR GLU ALA SEQRES 4 B 257 GLY LEU SER ARG PRO ALA VAL ARG ARG ILE LEU LEU THR SEQRES 5 B 257 LEU GLN LYS LEU GLY TYR VAL ALA GLY SER GLY GLY ARG SEQRES 6 B 257 TRP SER LEU THR PRO ARG VAL LEU SER ILE GLY GLN HIS SEQRES 7 B 257 TYR SER GLU SER HIS ALA LEU ILE GLU ALA ALA MSE PRO SEQRES 8 B 257 ARG LEU LEU GLU VAL ALA GLU LYS THR GLN GLU SER ALA SEQRES 9 B 257 SER LEU GLY VAL LEU ASP GLY ALA ASP VAL VAL TYR ALA SEQRES 10 B 257 ALA ARG VAL PRO VAL ARG ARG ILE MSE SER ILE ASN VAL SEQRES 11 B 257 SER VAL GLY THR ARG VAL PRO ALA TYR ALA THR SER MSE SEQRES 12 B 257 GLY ARG ALA LEU LEU ALA TRP ALA PRO ALA ASP VAL VAL SEQRES 13 B 257 GLU ARG VAL VAL ALA GLU SER THR PHE GLN LYS LEU GLY SEQRES 14 B 257 PRO GLU THR ILE GLY THR ALA ALA GLU LEU GLU ARG GLU SEQRES 15 B 257 LEU ALA LYS VAL ARG GLU GLN GLY PHE ALA LEU THR SER SEQRES 16 B 257 GLU GLU LEU GLU LYS GLY LEU ILE SER LEU ALA ALA PRO SEQRES 17 B 257 VAL HIS ASP ALA GLY GLY THR VAL VAL GLY VAL VAL ALA SEQRES 18 B 257 CYS SER THR SER SER ALA ARG ASN THR PRO ALA GLN PHE SEQRES 19 B 257 ARG GLU GLN ALA VAL PRO CYS VAL LEU ALA ALA ALA ALA SEQRES 20 B 257 ALA LEU SER ALA ASP MSE GLY PHE ALA GLY SEQRES 1 C 257 GLY MET THR GLU SER ASP ARG ASP TYR ILE GLN SER ILE SEQRES 2 C 257 GLU ARG GLY PHE ALA VAL LEU LEU ALA PHE ASP ALA GLN SEQRES 3 C 257 ARG PRO ASN PRO THR LEU ALA GLU LEU ALA THR GLU ALA SEQRES 4 C 257 GLY LEU SER ARG PRO ALA VAL ARG ARG ILE LEU LEU THR SEQRES 5 C 257 LEU GLN LYS LEU GLY TYR VAL ALA GLY SER GLY GLY ARG SEQRES 6 C 257 TRP SER LEU THR PRO ARG VAL LEU SER ILE GLY GLN HIS SEQRES 7 C 257 TYR SER GLU SER HIS ALA LEU ILE GLU ALA ALA MSE PRO SEQRES 8 C 257 ARG LEU LEU GLU VAL ALA GLU LYS THR GLN GLU SER ALA SEQRES 9 C 257 SER LEU GLY VAL LEU ASP GLY ALA ASP VAL VAL TYR ALA SEQRES 10 C 257 ALA ARG VAL PRO VAL ARG ARG ILE MSE SER ILE ASN VAL SEQRES 11 C 257 SER VAL GLY THR ARG VAL PRO ALA TYR ALA THR SER MSE SEQRES 12 C 257 GLY ARG ALA LEU LEU ALA TRP ALA PRO ALA ASP VAL VAL SEQRES 13 C 257 GLU ARG VAL VAL ALA GLU SER THR PHE GLN LYS LEU GLY SEQRES 14 C 257 PRO GLU THR ILE GLY THR ALA ALA GLU LEU GLU ARG GLU SEQRES 15 C 257 LEU ALA LYS VAL ARG GLU GLN GLY PHE ALA LEU THR SER SEQRES 16 C 257 GLU GLU LEU GLU LYS GLY LEU ILE SER LEU ALA ALA PRO SEQRES 17 C 257 VAL HIS ASP ALA GLY GLY THR VAL VAL GLY VAL VAL ALA SEQRES 18 C 257 CYS SER THR SER SER ALA ARG ASN THR PRO ALA GLN PHE SEQRES 19 C 257 ARG GLU GLN ALA VAL PRO CYS VAL LEU ALA ALA ALA ALA SEQRES 20 C 257 ALA LEU SER ALA ASP MSE GLY PHE ALA GLY SEQRES 1 D 257 GLY MET THR GLU SER ASP ARG ASP TYR ILE GLN SER ILE SEQRES 2 D 257 GLU ARG GLY PHE ALA VAL LEU LEU ALA PHE ASP ALA GLN SEQRES 3 D 257 ARG PRO ASN PRO THR LEU ALA GLU LEU ALA THR GLU ALA SEQRES 4 D 257 GLY LEU SER ARG PRO ALA VAL ARG ARG ILE LEU LEU THR SEQRES 5 D 257 LEU GLN LYS LEU GLY TYR VAL ALA GLY SER GLY GLY ARG SEQRES 6 D 257 TRP SER LEU THR PRO ARG VAL LEU SER ILE GLY GLN HIS SEQRES 7 D 257 TYR SER GLU SER HIS ALA LEU ILE GLU ALA ALA MSE PRO SEQRES 8 D 257 ARG LEU LEU GLU VAL ALA GLU LYS THR GLN GLU SER ALA SEQRES 9 D 257 SER LEU GLY VAL LEU ASP GLY ALA ASP VAL VAL TYR ALA SEQRES 10 D 257 ALA ARG VAL PRO VAL ARG ARG ILE MSE SER ILE ASN VAL SEQRES 11 D 257 SER VAL GLY THR ARG VAL PRO ALA TYR ALA THR SER MSE SEQRES 12 D 257 GLY ARG ALA LEU LEU ALA TRP ALA PRO ALA ASP VAL VAL SEQRES 13 D 257 GLU ARG VAL VAL ALA GLU SER THR PHE GLN LYS LEU GLY SEQRES 14 D 257 PRO GLU THR ILE GLY THR ALA ALA GLU LEU GLU ARG GLU SEQRES 15 D 257 LEU ALA LYS VAL ARG GLU GLN GLY PHE ALA LEU THR SER SEQRES 16 D 257 GLU GLU LEU GLU LYS GLY LEU ILE SER LEU ALA ALA PRO SEQRES 17 D 257 VAL HIS ASP ALA GLY GLY THR VAL VAL GLY VAL VAL ALA SEQRES 18 D 257 CYS SER THR SER SER ALA ARG ASN THR PRO ALA GLN PHE SEQRES 19 D 257 ARG GLU GLN ALA VAL PRO CYS VAL LEU ALA ALA ALA ALA SEQRES 20 D 257 ALA LEU SER ALA ASP MSE GLY PHE ALA GLY MODRES 2G7U MSE A 89 MET SELENOMETHIONINE MODRES 2G7U MSE A 125 MET SELENOMETHIONINE MODRES 2G7U MSE A 142 MET SELENOMETHIONINE MODRES 2G7U MSE A 252 MET SELENOMETHIONINE MODRES 2G7U MSE B 89 MET SELENOMETHIONINE MODRES 2G7U MSE B 125 MET SELENOMETHIONINE MODRES 2G7U MSE B 142 MET SELENOMETHIONINE MODRES 2G7U MSE B 252 MET SELENOMETHIONINE MODRES 2G7U MSE C 89 MET SELENOMETHIONINE MODRES 2G7U MSE C 125 MET SELENOMETHIONINE MODRES 2G7U MSE C 142 MET SELENOMETHIONINE MODRES 2G7U MSE C 252 MET SELENOMETHIONINE MODRES 2G7U MSE D 89 MET SELENOMETHIONINE MODRES 2G7U MSE D 125 MET SELENOMETHIONINE MODRES 2G7U MSE D 142 MET SELENOMETHIONINE MODRES 2G7U MSE D 252 MET SELENOMETHIONINE HET MSE A 89 8 HET MSE A 125 8 HET MSE A 142 8 HET MSE A 252 8 HET MSE B 89 8 HET MSE B 125 8 HET MSE B 142 8 HET MSE B 252 8 HET MSE C 89 8 HET MSE C 125 8 HET MSE C 142 8 HET MSE C 252 8 HET MSE D 89 8 HET MSE D 125 8 HET MSE D 142 8 HET MSE D 252 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 5 HOH *539(H2 O) HELIX 1 1 ILE A 9 ALA A 21 1 13 HELIX 2 2 THR A 30 GLY A 39 1 10 HELIX 3 3 SER A 41 LEU A 55 1 15 HELIX 4 4 VAL A 71 GLN A 76 1 6 HELIX 5 5 SER A 79 GLN A 100 1 22 HELIX 6 6 THR A 140 ALA A 148 1 9 HELIX 7 7 PRO A 151 SER A 162 1 12 HELIX 8 8 THR A 174 GLY A 189 1 16 HELIX 9 9 THR A 229 MSE A 252 1 24 HELIX 10 10 ILE B 9 ALA B 21 1 13 HELIX 11 11 THR B 30 GLY B 39 1 10 HELIX 12 12 SER B 41 LEU B 55 1 15 HELIX 13 13 PRO B 69 SER B 81 1 13 HELIX 14 14 ALA B 83 GLN B 100 1 18 HELIX 15 15 THR B 140 ALA B 148 1 9 HELIX 16 16 PRO B 151 SER B 162 1 12 HELIX 17 17 THR B 174 GLY B 189 1 16 HELIX 18 18 THR B 229 MSE B 252 1 24 HELIX 19 19 ILE C 9 LEU C 20 1 12 HELIX 20 20 THR C 30 GLY C 39 1 10 HELIX 21 21 SER C 41 GLY C 56 1 16 HELIX 22 22 PRO C 69 TYR C 78 5 10 HELIX 23 23 SER C 79 GLN C 100 1 22 HELIX 24 24 THR C 140 ALA C 148 1 9 HELIX 25 25 PRO C 151 SER C 162 1 12 HELIX 26 26 THR C 174 GLY C 189 1 16 HELIX 27 27 THR C 229 MSE C 252 1 24 HELIX 28 28 ILE D 9 LEU D 20 1 12 HELIX 29 29 THR D 30 GLY D 39 1 10 HELIX 30 30 SER D 41 LEU D 55 1 15 HELIX 31 31 PRO D 69 VAL D 71 5 3 HELIX 32 32 LEU D 72 HIS D 82 1 11 HELIX 33 33 HIS D 82 GLN D 100 1 19 HELIX 34 34 THR D 140 ALA D 148 1 9 HELIX 35 35 PRO D 151 SER D 162 1 12 HELIX 36 36 THR D 174 GLY D 189 1 16 HELIX 37 37 THR D 229 MSE D 252 1 24 SHEET 1 A 2 VAL A 58 SER A 61 0 SHEET 2 A 2 ARG A 64 LEU A 67 -1 O ARG A 64 N SER A 61 SHEET 1 B 6 ARG A 134 PRO A 136 0 SHEET 2 B 6 ASP A 112 VAL A 119 -1 N VAL A 113 O VAL A 135 SHEET 3 B 6 ALA A 103 ASP A 109 -1 N ALA A 103 O VAL A 119 SHEET 4 B 6 VAL A 215 SER A 224 -1 O ALA A 220 N SER A 104 SHEET 5 B 6 LEU A 201 HIS A 209 -1 N VAL A 208 O GLY A 217 SHEET 6 B 6 ALA A 191 SER A 194 -1 N ALA A 191 O ALA A 205 SHEET 1 C 2 MSE A 125 ILE A 127 0 SHEET 2 C 2 MSE D 125 ILE D 127 -1 O SER D 126 N SER A 126 SHEET 1 D 2 VAL B 58 SER B 61 0 SHEET 2 D 2 ARG B 64 LEU B 67 -1 O ARG B 64 N SER B 61 SHEET 1 E 6 ARG B 134 PRO B 136 0 SHEET 2 E 6 ASP B 112 VAL B 119 -1 N VAL B 113 O VAL B 135 SHEET 3 E 6 ALA B 103 ASP B 109 -1 N ASP B 109 O ASP B 112 SHEET 4 E 6 VAL B 215 SER B 224 -1 O VAL B 218 N GLY B 106 SHEET 5 E 6 LEU B 201 HIS B 209 -1 N VAL B 208 O GLY B 217 SHEET 6 E 6 ALA B 191 SER B 194 -1 N THR B 193 O SER B 203 SHEET 1 F 2 VAL C 58 SER C 61 0 SHEET 2 F 2 ARG C 64 LEU C 67 -1 O ARG C 64 N SER C 61 SHEET 1 G 6 ARG C 134 PRO C 136 0 SHEET 2 G 6 ASP C 112 VAL C 119 -1 N VAL C 113 O VAL C 135 SHEET 3 G 6 ALA C 103 ASP C 109 -1 N ASP C 109 O ASP C 112 SHEET 4 G 6 VAL C 215 SER C 224 -1 O ALA C 220 N SER C 104 SHEET 5 G 6 LEU C 201 HIS C 209 -1 N VAL C 208 O GLY C 217 SHEET 6 G 6 ALA C 191 SER C 194 -1 N ALA C 191 O ALA C 205 SHEET 1 H 2 VAL D 58 SER D 61 0 SHEET 2 H 2 ARG D 64 LEU D 67 -1 O ARG D 64 N SER D 61 SHEET 1 I 6 ARG D 134 PRO D 136 0 SHEET 2 I 6 ASP D 112 VAL D 119 -1 N VAL D 113 O VAL D 135 SHEET 3 I 6 ALA D 103 ASP D 109 -1 N ALA D 103 O VAL D 119 SHEET 4 I 6 VAL D 215 SER D 224 -1 O ALA D 220 N SER D 104 SHEET 5 I 6 LEU D 201 HIS D 209 -1 N VAL D 208 O GLY D 217 SHEET 6 I 6 ALA D 191 SER D 194 -1 N ALA D 191 O ALA D 205 LINK C ALA A 88 N MSE A 89 1555 1555 1.34 LINK C MSE A 89 N PRO A 90 1555 1555 1.35 LINK C ILE A 124 N MSE A 125 1555 1555 1.33 LINK C MSE A 125 N SER A 126 1555 1555 1.34 LINK C SER A 141 N MSE A 142 1555 1555 1.34 LINK C MSE A 142 N GLY A 143 1555 1555 1.32 LINK C ASP A 251 N MSE A 252 1555 1555 1.33 LINK C MSE A 252 N GLY A 253 1555 1555 1.33 LINK C ALA B 88 N MSE B 89 1555 1555 1.34 LINK C MSE B 89 N PRO B 90 1555 1555 1.36 LINK C ILE B 124 N MSE B 125 1555 1555 1.34 LINK C MSE B 125 N SER B 126 1555 1555 1.33 LINK C SER B 141 N MSE B 142 1555 1555 1.33 LINK C MSE B 142 N GLY B 143 1555 1555 1.33 LINK C ASP B 251 N MSE B 252 1555 1555 1.34 LINK C MSE B 252 N GLY B 253 1555 1555 1.33 LINK C ALA C 88 N MSE C 89 1555 1555 1.33 LINK C MSE C 89 N PRO C 90 1555 1555 1.35 LINK C ILE C 124 N MSE C 125 1555 1555 1.34 LINK C MSE C 125 N SER C 126 1555 1555 1.33 LINK C SER C 141 N MSE C 142 1555 1555 1.32 LINK C MSE C 142 N GLY C 143 1555 1555 1.33 LINK C ASP C 251 N MSE C 252 1555 1555 1.34 LINK C MSE C 252 N GLY C 253 1555 1555 1.33 LINK C ALA D 88 N MSE D 89 1555 1555 1.33 LINK C MSE D 89 N PRO D 90 1555 1555 1.35 LINK C ILE D 124 N MSE D 125 1555 1555 1.33 LINK C MSE D 125 N SER D 126 1555 1555 1.33 LINK C SER D 141 N MSE D 142 1555 1555 1.34 LINK C MSE D 142 N GLY D 143 1555 1555 1.33 LINK C ASP D 251 N MSE D 252 1555 1555 1.34 LINK C MSE D 252 N GLY D 253 1555 1555 1.33 CRYST1 96.407 186.520 126.360 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010373 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005361 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007914 0.00000