HEADER RECOMBINATION 02-MAR-06 2G88 TITLE MSRECA-DATP COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN RECA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RECOMBINASE A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS; SOURCE 3 ORGANISM_TAXID: 1772; SOURCE 4 GENE: RECA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JC10289; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTHIOA KEYWDS RECOMBINATION, DNA-REPAIR EXPDTA X-RAY DIFFRACTION AUTHOR R.KRISHNA,G.P.MANJUNATH,P.KUMAR,A.SUROLIA,N.R.CHANDRA,K.MUNIYAPPA, AUTHOR 2 M.VIJAYAN REVDAT 3 30-AUG-23 2G88 1 REMARK LINK REVDAT 2 24-FEB-09 2G88 1 VERSN REVDAT 1 16-MAY-06 2G88 0 JRNL AUTH R.KRISHNA,G.P.MANJUNATH,P.KUMAR,A.SUROLIA,N.R.CHANDRA, JRNL AUTH 2 K.MUNIYAPPA,M.VIJAYAN JRNL TITL CRYSTALLOGRAPHIC IDENTIFICATION OF AN ORDERED C-TERMINAL JRNL TITL 2 DOMAIN AND A SECOND NUCLEOTIDE-BINDING SITE IN RECA: NEW JRNL TITL 3 INSIGHTS INTO ALLOSTERY. JRNL REF NUCLEIC ACIDS RES. V. 34 2186 2006 JRNL REFN ISSN 0305-1048 JRNL PMID 16648362 JRNL DOI 10.1093/NAR/GKL107 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.DATTA,M.M.PRABU,M.B.VAZE,N.GANESH,N.R.CHANDRA,K.MUNIYAPPA, REMARK 1 AUTH 2 M.VIJAYAN REMARK 1 TITL CRYSTAL STRUCTURES OF MYCOBACTERIUM TUBERCULOSIS RECA AND REMARK 1 TITL 2 ITS COMPLEX WITH ADP-ALF4: IMPLICATIONS FOR DECREASED ATPASE REMARK 1 TITL 3 ACTIVITY AND MOLECULAR AGGREGATION REMARK 1 REF NUCLEIC ACIDS RES. V. 28 4964 2000 REMARK 1 REFN ISSN 0305-1048 REMARK 1 PMID 11121488 REMARK 1 DOI 10.1093/NAR/28.24.4964 REMARK 1 REFERENCE 2 REMARK 1 AUTH S.DATTA,N.GANESH,N.R.CHANDRA,K.MUNIYAPPA,M.VIJAYAN REMARK 1 TITL STRUCTURAL STUDIES ON MTRECA-NUCLEOTIDE COMPLEXES: INSIGHTS REMARK 1 TITL 2 INTO DNA AND NUCLEOTIDE BINDING AND THE STRUCTURAL SIGNATURE REMARK 1 TITL 3 OF NTP RECOGNITION REMARK 1 REF PROTEINS V. 50 474 2003 REMARK 1 REFN ISSN 0887-3585 REMARK 1 PMID 12557189 REMARK 1 DOI 10.1002/PROT.10315 REMARK 1 REFERENCE 3 REMARK 1 AUTH S.DATTA,R.KRISHNA,N.GANESH,N.R.CHANDRA,K.MUNIYAPPA,M.VIJAYAN REMARK 1 TITL CRYSTAL STRUCTURES OF MYCOBACTERIUM SMEGMATIS RECA AND ITS REMARK 1 TITL 2 NUCLEOTIDE COMPLEXES REMARK 1 REF J.BACTERIOL. V. 185 4280 2003 REMARK 1 REFN ISSN 0021-9193 REMARK 1 PMID 12837805 REMARK 1 DOI 10.1128/JB.185.14.4280-4284.2003 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.4 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 413864.120 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 7829 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.309 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.600 REMARK 3 FREE R VALUE TEST SET COUNT : 829 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.011 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.40 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1143 REMARK 3 BIN R VALUE (WORKING SET) : 0.3220 REMARK 3 BIN FREE R VALUE : 0.3790 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 124 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.034 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2399 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 74 REMARK 3 SOLVENT ATOMS : 108 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.29000 REMARK 3 B22 (A**2) : -6.29000 REMARK 3 B33 (A**2) : 12.58000 REMARK 3 B12 (A**2) : 3.16000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM SIGMAA (A) : 0.53 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.55 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.76 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : 2.800 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.470 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : GROUP REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.11 REMARK 3 BSOL : 55.44 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : D.PAR REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : D.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2G88 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000036811. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JAN-04 REMARK 200 TEMPERATURE (KELVIN) : 293.0 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7941 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 25.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.53000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1UBC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CITRATE PHOSPHATE, 30% 4000 PEG, REMARK 280 0.1M SODIUM CITRATE, 10% GLYCEROL, 0.1M NACL, 0.2M AMMONIUM REMARK 280 ACETATE, 0.025 DTT, 0.025 SODIUM AZIDE, PH 7.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 24.32333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 48.64667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.48500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 60.80833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 12.16167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 160 REMARK 465 MET A 161 REMARK 465 GLY A 162 REMARK 465 ASP A 163 REMARK 465 SER A 164 REMARK 465 HIS A 165 REMARK 465 GLU A 199 REMARK 465 LYS A 200 REMARK 465 ILE A 201 REMARK 465 GLY A 202 REMARK 465 VAL A 203 REMARK 465 MET A 204 REMARK 465 PHE A 205 REMARK 465 GLY A 206 REMARK 465 SER A 207 REMARK 465 PRO A 208 REMARK 465 GLU A 209 REMARK 465 THR A 210 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 LYS A 21 CG CD CE NZ REMARK 470 ARG A 36 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 107 CG CD CE NZ REMARK 470 GLU A 129 CG CD OE1 OE2 REMARK 470 LEU A 168 CG CD1 CD2 REMARK 470 ASN A 185 CG OD1 ND2 REMARK 470 LEU A 197 CG CD1 CD2 REMARK 470 ARG A 198 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 229 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 234 CG CD CE NZ REMARK 470 THR A 237 OG1 CG2 REMARK 470 SER A 289 OG REMARK 470 LYS A 309 CG CD CE NZ REMARK 470 GLU A 313 CG CD OE1 OE2 REMARK 470 LYS A 324 CG CD CE NZ REMARK 470 LYS A 328 CG CD CE NZ REMARK 470 THR A 336 OG1 CG2 REMARK 470 GLU A 338 CG CD OE1 OE2 REMARK 470 ASP A 341 CG OD1 OD2 REMARK 470 VAL A 342 CG1 CG2 REMARK 470 LEU A 343 CG CD1 CD2 REMARK 470 PRO A 344 CG CD REMARK 470 VAL A 347 CG1 CG2 REMARK 470 ASP A 348 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 282 CB GLU A 282 CG 0.127 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 168 N - CA - C ANGL. DEV. = 19.1 DEGREES REMARK 500 GLY A 213 N - CA - C ANGL. DEV. = -15.8 DEGREES REMARK 500 ARG A 245 N - CA - CB ANGL. DEV. = 19.1 DEGREES REMARK 500 ARG A 245 CA - CB - CG ANGL. DEV. = 23.5 DEGREES REMARK 500 ARG A 245 CB - CG - CD ANGL. DEV. = 17.2 DEGREES REMARK 500 ARG A 287 N - CA - C ANGL. DEV. = 16.8 DEGREES REMARK 500 SER A 291 N - CA - C ANGL. DEV. = -30.7 DEGREES REMARK 500 TRP A 292 N - CA - C ANGL. DEV. = 24.2 DEGREES REMARK 500 LEU A 329 N - CA - C ANGL. DEV. = -17.1 DEGREES REMARK 500 ALA A 333 N - CA - C ANGL. DEV. = 21.1 DEGREES REMARK 500 ALA A 337 N - CA - C ANGL. DEV. = 16.5 DEGREES REMARK 500 ASP A 340 N - CA - C ANGL. DEV. = 21.0 DEGREES REMARK 500 LEU A 343 N - CA - C ANGL. DEV. = 22.4 DEGREES REMARK 500 PRO A 344 C - N - CA ANGL. DEV. = 13.5 DEGREES REMARK 500 PRO A 344 N - CA - C ANGL. DEV. = 20.6 DEGREES REMARK 500 ALA A 345 N - CA - C ANGL. DEV. = 24.4 DEGREES REMARK 500 PRO A 346 C - N - CA ANGL. DEV. = -18.2 DEGREES REMARK 500 PRO A 346 C - N - CD ANGL. DEV. = 14.8 DEGREES REMARK 500 PHE A 349 N - CA - C ANGL. DEV. = -16.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 2 62.96 170.88 REMARK 500 GLN A 4 32.59 99.43 REMARK 500 ALA A 5 -129.11 -125.89 REMARK 500 PRO A 6 -169.73 -119.63 REMARK 500 GLU A 9 -18.68 -43.57 REMARK 500 ALA A 15 -73.39 -53.00 REMARK 500 ASP A 50 -72.92 -63.98 REMARK 500 GLU A 70 162.06 -46.96 REMARK 500 SER A 71 51.52 31.09 REMARK 500 LYS A 74 -70.69 -51.61 REMARK 500 ALA A 97 -2.15 -155.11 REMARK 500 ALA A 100 20.62 -140.26 REMARK 500 PRO A 103 -16.37 -43.50 REMARK 500 GLU A 125 36.52 -79.49 REMARK 500 GLN A 126 -46.55 -139.30 REMARK 500 LEU A 140 -153.75 -64.58 REMARK 500 ASP A 141 -28.30 -167.31 REMARK 500 SER A 147 118.75 69.73 REMARK 500 LEU A 151 68.74 -101.51 REMARK 500 ILE A 157 7.88 -66.24 REMARK 500 GLU A 158 -99.03 -136.61 REMARK 500 LEU A 168 -75.46 -8.37 REMARK 500 GLN A 175 -94.27 -66.73 REMARK 500 ALA A 176 -40.31 -27.35 REMARK 500 SER A 187 -7.20 -150.74 REMARK 500 GLN A 196 55.75 -94.69 REMARK 500 LEU A 197 73.04 -42.68 REMARK 500 THR A 212 86.95 40.22 REMARK 500 LYS A 215 30.27 -88.97 REMARK 500 ALA A 216 -57.22 -142.13 REMARK 500 ILE A 230 -89.52 -118.62 REMARK 500 LEU A 233 99.38 -10.85 REMARK 500 ASP A 235 18.25 -179.47 REMARK 500 ASP A 238 -110.92 168.73 REMARK 500 ILE A 277 -70.26 -71.92 REMARK 500 GLU A 282 8.08 -64.57 REMARK 500 LYS A 288 -92.73 29.64 REMARK 500 SER A 291 -114.58 -99.86 REMARK 500 TRP A 292 105.49 5.73 REMARK 500 GLU A 296 44.65 35.65 REMARK 500 ILE A 331 152.48 133.39 REMARK 500 ALA A 333 -135.32 -148.40 REMARK 500 VAL A 335 -66.61 -157.72 REMARK 500 THR A 336 -64.48 11.48 REMARK 500 ALA A 337 16.06 59.68 REMARK 500 GLU A 338 119.45 169.92 REMARK 500 ALA A 339 -54.81 172.29 REMARK 500 ASP A 340 88.13 -61.60 REMARK 500 ASP A 341 168.44 155.54 REMARK 500 VAL A 342 60.84 71.37 REMARK 500 REMARK 500 THIS ENTRY HAS 54 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A2633 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 104 OE2 REMARK 620 2 GLN A 259 OE1 90.4 REMARK 620 3 HOH A 500 O 82.7 76.9 REMARK 620 4 DTP A 833 O3G 82.5 166.9 91.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 2633 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTP A 832 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTP A 833 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 1322 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1UBC RELATED DB: PDB REMARK 900 STRUCTURE OF RECA PROTEIN IN COMPLEX WITH ADP, ATPGS, DATP DBREF 2G88 A 1 349 UNP Q59560 RECA_MYCSM 1 349 SEQRES 1 A 349 MET ALA GLN GLN ALA PRO ASP ARG GLU LYS ALA LEU GLU SEQRES 2 A 349 LEU ALA MET ALA GLN ILE ASP LYS ASN PHE GLY LYS GLY SEQRES 3 A 349 SER VAL MET ARG LEU GLY GLU GLU VAL ARG GLN PRO ILE SEQRES 4 A 349 SER VAL ILE PRO THR GLY SER ILE SER LEU ASP VAL ALA SEQRES 5 A 349 LEU GLY ILE GLY GLY LEU PRO ARG GLY ARG VAL ILE GLU SEQRES 6 A 349 ILE TYR GLY PRO GLU SER SER GLY LYS THR THR VAL ALA SEQRES 7 A 349 LEU HIS ALA VAL ALA ASN ALA GLN ALA ALA GLY GLY ILE SEQRES 8 A 349 ALA ALA PHE ILE ASP ALA GLU HIS ALA LEU ASP PRO GLU SEQRES 9 A 349 TYR ALA LYS LYS LEU GLY VAL ASP THR ASP SER LEU LEU SEQRES 10 A 349 VAL SER GLN PRO ASP THR GLY GLU GLN ALA LEU GLU ILE SEQRES 11 A 349 ALA ASP MET LEU VAL ARG SER GLY ALA LEU ASP ILE ILE SEQRES 12 A 349 VAL ILE ASP SER VAL ALA ALA LEU VAL PRO ARG ALA GLU SEQRES 13 A 349 ILE GLU GLY GLU MET GLY ASP SER HIS VAL GLY LEU GLN SEQRES 14 A 349 ALA ARG LEU MET SER GLN ALA LEU ARG LYS MET THR GLY SEQRES 15 A 349 ALA LEU ASN ASN SER GLY THR THR ALA ILE PHE ILE ASN SEQRES 16 A 349 GLN LEU ARG GLU LYS ILE GLY VAL MET PHE GLY SER PRO SEQRES 17 A 349 GLU THR THR THR GLY GLY LYS ALA LEU LYS PHE TYR ALA SEQRES 18 A 349 SER VAL ARG LEU ASP VAL ARG ARG ILE GLU THR LEU LYS SEQRES 19 A 349 ASP GLY THR ASP ALA VAL GLY ASN ARG THR ARG VAL LYS SEQRES 20 A 349 VAL VAL LYS ASN LYS VAL SER PRO PRO PHE LYS GLN ALA SEQRES 21 A 349 GLU PHE ASP ILE LEU TYR GLY GLN GLY ILE SER ARG GLU SEQRES 22 A 349 GLY SER LEU ILE ASP MET GLY VAL GLU HIS GLY PHE ILE SEQRES 23 A 349 ARG LYS SER GLY SER TRP PHE THR TYR GLU GLY GLU GLN SEQRES 24 A 349 LEU GLY GLN GLY LYS GLU ASN ALA ARG LYS PHE LEU LEU SEQRES 25 A 349 GLU ASN THR ASP VAL ALA ASN GLU ILE GLU LYS LYS ILE SEQRES 26 A 349 LYS GLU LYS LEU GLY ILE GLY ALA VAL VAL THR ALA GLU SEQRES 27 A 349 ALA ASP ASP VAL LEU PRO ALA PRO VAL ASP PHE HET MG A2633 1 HET DTP A 832 30 HET DTP A 833 30 HET CIT A1322 13 HETNAM MG MAGNESIUM ION HETNAM DTP 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE HETNAM CIT CITRIC ACID FORMUL 2 MG MG 2+ FORMUL 3 DTP 2(C10 H16 N5 O12 P3) FORMUL 5 CIT C6 H8 O7 FORMUL 6 HOH *108(H2 O) HELIX 1 1 ARG A 8 GLY A 24 1 17 HELIX 2 2 SER A 46 LEU A 53 1 8 HELIX 3 3 GLY A 73 ALA A 88 1 16 HELIX 4 4 ASP A 102 LYS A 108 1 7 HELIX 5 5 ASP A 112 LEU A 116 5 5 HELIX 6 6 THR A 123 LEU A 128 1 6 HELIX 7 7 LEU A 128 ARG A 136 1 9 HELIX 8 8 GLY A 167 ASN A 186 1 20 HELIX 9 9 GLY A 213 ALA A 221 1 9 HELIX 10 10 SER A 271 GLU A 282 1 12 HELIX 11 11 GLY A 303 LEU A 312 1 10 HELIX 12 12 ASN A 314 GLU A 327 1 14 SHEET 1 A 9 LEU A 117 SER A 119 0 SHEET 2 A 9 ILE A 91 ILE A 95 1 N PHE A 94 O SER A 119 SHEET 3 A 9 LEU A 140 ILE A 145 1 O VAL A 144 N ILE A 95 SHEET 4 A 9 THR A 190 ASN A 195 1 O ILE A 192 N ILE A 143 SHEET 5 A 9 VAL A 63 TYR A 67 1 N ILE A 64 O ALA A 191 SHEET 6 A 9 VAL A 223 GLU A 231 1 O LEU A 225 N GLU A 65 SHEET 7 A 9 ARG A 243 ASN A 251 -1 O ARG A 245 N ARG A 228 SHEET 8 A 9 LYS A 258 LEU A 265 -1 O LYS A 258 N VAL A 248 SHEET 9 A 9 GLY A 269 ILE A 270 -1 O GLY A 269 N LEU A 265 SHEET 1 B 2 THR A 294 TYR A 295 0 SHEET 2 B 2 GLU A 298 GLN A 299 -1 O GLU A 298 N TYR A 295 LINK OE2 GLU A 104 MG MG A2633 5564 1555 2.40 LINK OE1 GLN A 259 MG MG A2633 1555 1555 2.10 LINK O HOH A 500 MG MG A2633 1555 1555 2.45 LINK O3G DTP A 833 MG MG A2633 1555 1555 2.30 SITE 1 AC1 5 GLU A 104 PHE A 257 GLN A 259 HOH A 500 SITE 2 AC1 5 DTP A 833 SITE 1 AC2 12 GLU A 70 SER A 71 SER A 72 GLY A 73 SITE 2 AC2 12 LYS A 74 THR A 75 THR A 76 ASP A 102 SITE 3 AC2 12 TYR A 105 GLN A 196 ASN A 242 TYR A 266 SITE 1 AC3 11 SER A 48 VAL A 51 GLU A 104 LYS A 258 SITE 2 AC3 11 GLU A 261 MET A 279 HIS A 283 PRO A 346 SITE 3 AC3 11 ASP A 348 HOH A 497 MG A2633 SITE 1 AC4 5 PHE A 23 GLY A 24 LYS A 25 ARG A 62 SITE 2 AC4 5 HOH A 503 CRYST1 108.212 108.212 72.970 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009241 0.005335 0.000000 0.00000 SCALE2 0.000000 0.010671 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013704 0.00000