HEADER HYDROLASE 06-MAR-06 2G9G TITLE CRYSTAL STRUCTURE OF HIS-TAGGED MOUSE PNGASE C-TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDE N-GLYCANASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN; COMPND 5 SYNONYM: PNGASE; COMPND 6 EC: 3.5.1.52; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: NGLY1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3 CONDON PLUS RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS BETA-SANDWICH, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR X.ZHOU,G.ZHAO,L.WANG,G.LI,W.J.LENNARZ,H.SCHINDELIN REVDAT 5 30-AUG-23 2G9G 1 REMARK SEQADV REVDAT 4 13-JUL-11 2G9G 1 VERSN REVDAT 3 24-FEB-09 2G9G 1 VERSN REVDAT 2 08-JUL-08 2G9G 1 JRNL REVDAT 1 24-OCT-06 2G9G 0 JRNL AUTH X.ZHOU,G.ZHAO,J.J.TRUGLIO,L.WANG,G.LI,W.J.LENNARZ, JRNL AUTH 2 H.SCHINDELIN JRNL TITL STRUCTURAL AND BIOCHEMICAL STUDIES OF THE C-TERMINAL DOMAIN JRNL TITL 2 OF MOUSE PEPTIDE-N-GLYCANASE IDENTIFY IT AS A JRNL TITL 3 MANNOSE-BINDING MODULE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 103 17214 2006 JRNL REFN ISSN 0027-8424 JRNL PMID 17088551 JRNL DOI 10.1073/PNAS.0602954103 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 12453 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 646 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 904 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.1740 REMARK 3 BIN FREE R VALUE SET COUNT : 51 REMARK 3 BIN FREE R VALUE : 0.2320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1533 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 115 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 21.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.22000 REMARK 3 B22 (A**2) : -0.30000 REMARK 3 B33 (A**2) : 0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.07000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.166 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.155 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.109 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.700 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1595 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1405 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2146 ; 1.495 ; 1.937 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3258 ; 0.839 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 187 ; 7.117 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 83 ;32.439 ;23.494 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 283 ;15.344 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;12.393 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 224 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1754 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 354 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 239 ; 0.177 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1468 ; 0.189 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 745 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 975 ; 0.082 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 78 ; 0.198 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 2 ; 0.022 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 32 ; 0.280 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.200 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1212 ; 2.811 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 393 ; 0.761 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1496 ; 3.315 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 800 ; 4.917 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 650 ; 6.502 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 454 A 488 REMARK 3 ORIGIN FOR THE GROUP (A): -24.7727 1.5100 -3.0199 REMARK 3 T TENSOR REMARK 3 T11: -0.0193 T22: 0.0686 REMARK 3 T33: -0.2438 T12: 0.0114 REMARK 3 T13: 0.0675 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 10.7113 L22: 15.1469 REMARK 3 L33: 5.3130 L12: 5.7119 REMARK 3 L13: 0.5754 L23: 2.2252 REMARK 3 S TENSOR REMARK 3 S11: 0.1046 S12: -0.9617 S13: -0.0828 REMARK 3 S21: 0.8512 S22: -0.1949 S23: 0.4833 REMARK 3 S31: 0.2808 S32: -0.3221 S33: 0.0903 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 489 A 509 REMARK 3 ORIGIN FOR THE GROUP (A): -13.0931 -0.0494 -11.6139 REMARK 3 T TENSOR REMARK 3 T11: -0.0954 T22: -0.0111 REMARK 3 T33: -0.1653 T12: 0.0052 REMARK 3 T13: -0.0378 T23: -0.0133 REMARK 3 L TENSOR REMARK 3 L11: 2.0011 L22: 8.1290 REMARK 3 L33: 5.6694 L12: -0.9083 REMARK 3 L13: 0.0622 L23: 3.7942 REMARK 3 S TENSOR REMARK 3 S11: -0.1069 S12: -0.5165 S13: -0.0284 REMARK 3 S21: 0.5797 S22: 0.2769 S23: -0.3580 REMARK 3 S31: -0.1409 S32: 0.5028 S33: -0.1701 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 510 A 522 REMARK 3 ORIGIN FOR THE GROUP (A): -24.1648 -6.5119 -12.8551 REMARK 3 T TENSOR REMARK 3 T11: -0.0460 T22: -0.0956 REMARK 3 T33: -0.1912 T12: -0.0063 REMARK 3 T13: 0.0437 T23: 0.0639 REMARK 3 L TENSOR REMARK 3 L11: 13.3825 L22: 1.5049 REMARK 3 L33: 3.9977 L12: -0.9236 REMARK 3 L13: 3.7733 L23: 0.4552 REMARK 3 S TENSOR REMARK 3 S11: -0.2448 S12: -0.5033 S13: -0.4169 REMARK 3 S21: 0.4636 S22: 0.1710 S23: 0.4161 REMARK 3 S31: 0.1501 S32: -0.2983 S33: 0.0738 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 523 A 552 REMARK 3 ORIGIN FOR THE GROUP (A): -21.4810 -10.8431 -23.6808 REMARK 3 T TENSOR REMARK 3 T11: -0.1395 T22: -0.1760 REMARK 3 T33: -0.1149 T12: -0.0002 REMARK 3 T13: -0.0075 T23: 0.0330 REMARK 3 L TENSOR REMARK 3 L11: 1.5887 L22: 1.4704 REMARK 3 L33: 1.7657 L12: -0.8387 REMARK 3 L13: -0.4555 L23: 0.7342 REMARK 3 S TENSOR REMARK 3 S11: -0.0560 S12: -0.1808 S13: -0.1277 REMARK 3 S21: 0.1072 S22: 0.1027 S23: 0.0816 REMARK 3 S31: 0.1071 S32: 0.0165 S33: -0.0467 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 553 A 573 REMARK 3 ORIGIN FOR THE GROUP (A): -21.9853 7.9421 -16.7342 REMARK 3 T TENSOR REMARK 3 T11: -0.0458 T22: -0.1184 REMARK 3 T33: -0.1446 T12: 0.0040 REMARK 3 T13: 0.0217 T23: -0.0293 REMARK 3 L TENSOR REMARK 3 L11: 1.4270 L22: 3.2844 REMARK 3 L33: 3.2543 L12: -0.1898 REMARK 3 L13: -0.9743 L23: 2.1074 REMARK 3 S TENSOR REMARK 3 S11: 0.1350 S12: -0.2777 S13: 0.1776 REMARK 3 S21: 0.3994 S22: -0.0334 S23: -0.0134 REMARK 3 S31: -0.1840 S32: -0.0415 S33: -0.1016 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 574 A 581 REMARK 3 ORIGIN FOR THE GROUP (A): -26.2466 -1.4261 -31.1014 REMARK 3 T TENSOR REMARK 3 T11: -0.1303 T22: -0.1805 REMARK 3 T33: -0.1228 T12: 0.0006 REMARK 3 T13: 0.0055 T23: 0.0243 REMARK 3 L TENSOR REMARK 3 L11: 0.9555 L22: 2.8012 REMARK 3 L33: 4.1061 L12: 1.5966 REMARK 3 L13: 1.9570 L23: 3.1554 REMARK 3 S TENSOR REMARK 3 S11: 0.1563 S12: 0.2066 S13: 0.1275 REMARK 3 S21: -0.0882 S22: -0.0102 S23: -0.1308 REMARK 3 S31: -0.1978 S32: -0.1338 S33: -0.1461 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 582 A 608 REMARK 3 ORIGIN FOR THE GROUP (A): -24.9593 10.7369 -21.3597 REMARK 3 T TENSOR REMARK 3 T11: -0.1190 T22: -0.1770 REMARK 3 T33: -0.0900 T12: 0.0397 REMARK 3 T13: 0.0045 T23: -0.0301 REMARK 3 L TENSOR REMARK 3 L11: 3.7948 L22: 2.3579 REMARK 3 L33: 3.9216 L12: 0.4625 REMARK 3 L13: -1.5177 L23: 0.3350 REMARK 3 S TENSOR REMARK 3 S11: 0.0734 S12: -0.0399 S13: 0.4326 REMARK 3 S21: 0.2178 S22: -0.0318 S23: 0.2192 REMARK 3 S31: -0.3530 S32: -0.3064 S33: -0.0415 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 609 A 618 REMARK 3 ORIGIN FOR THE GROUP (A): -28.2126 -0.8139 -25.0776 REMARK 3 T TENSOR REMARK 3 T11: -0.1941 T22: -0.1688 REMARK 3 T33: -0.1120 T12: -0.0085 REMARK 3 T13: 0.0371 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 1.9567 L22: 1.2845 REMARK 3 L33: 6.2512 L12: -0.1384 REMARK 3 L13: 1.6696 L23: 2.3623 REMARK 3 S TENSOR REMARK 3 S11: -0.0424 S12: -0.0433 S13: 0.1411 REMARK 3 S21: -0.2302 S22: -0.0110 S23: 0.1688 REMARK 3 S31: -0.3589 S32: -0.1008 S33: 0.0534 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 619 A 641 REMARK 3 ORIGIN FOR THE GROUP (A): -16.4715 -9.2389 -27.8492 REMARK 3 T TENSOR REMARK 3 T11: -0.1920 T22: -0.1895 REMARK 3 T33: -0.1473 T12: 0.0144 REMARK 3 T13: 0.0069 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 3.5524 L22: 3.5375 REMARK 3 L33: 2.0763 L12: -0.5591 REMARK 3 L13: 1.3632 L23: 0.2056 REMARK 3 S TENSOR REMARK 3 S11: 0.1276 S12: -0.0462 S13: -0.1035 REMARK 3 S21: 0.0421 S22: 0.0003 S23: -0.2100 REMARK 3 S31: 0.1972 S32: 0.1486 S33: -0.1278 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 642 A 651 REMARK 3 ORIGIN FOR THE GROUP (A): -20.4169 11.4854 -11.6102 REMARK 3 T TENSOR REMARK 3 T11: 0.0022 T22: -0.0547 REMARK 3 T33: -0.1393 T12: 0.0412 REMARK 3 T13: 0.0224 T23: -0.0966 REMARK 3 L TENSOR REMARK 3 L11: 3.8457 L22: 15.5676 REMARK 3 L33: 8.9106 L12: -6.3822 REMARK 3 L13: -5.0988 L23: 11.0566 REMARK 3 S TENSOR REMARK 3 S11: -0.1858 S12: -0.1931 S13: 0.1148 REMARK 3 S21: 0.7675 S22: -0.1013 S23: 0.6696 REMARK 3 S31: 0.0154 S32: -0.0843 S33: 0.2871 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2G9G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000036855. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X26C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9996 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13124 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : 0.10800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.48500 REMARK 200 R SYM FOR SHELL (I) : 0.48500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2G2F REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M LI2SO4 AND 100 MM HEPES, PH 7.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 35.86600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.37350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 35.86600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.37350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -91.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -65.54257 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -66.21736 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 125 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 2 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 431 REMARK 465 GLY A 432 REMARK 465 SER A 433 REMARK 465 SER A 434 REMARK 465 HIS A 435 REMARK 465 HIS A 436 REMARK 465 HIS A 437 REMARK 465 HIS A 438 REMARK 465 HIS A 439 REMARK 465 HIS A 440 REMARK 465 SER A 441 REMARK 465 SER A 442 REMARK 465 GLY A 443 REMARK 465 LEU A 444 REMARK 465 VAL A 445 REMARK 465 PRO A 446 REMARK 465 ARG A 447 REMARK 465 GLY A 448 REMARK 465 SER A 449 REMARK 465 HIS A 450 REMARK 465 GLU A 451 REMARK 465 LEU A 452 REMARK 465 GLY A 453 REMARK 465 VAL A 464 REMARK 465 ALA A 465 REMARK 465 ARG A 466 REMARK 465 GLY A 467 REMARK 465 GLU A 468 REMARK 465 THR A 469 REMARK 465 GLY A 470 REMARK 465 LEU A 471 REMARK 465 GLU A 472 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 11 O HOH A 53 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 457 16.91 -147.58 REMARK 500 ASP A 506 52.39 -115.60 REMARK 500 TRP A 519 -72.50 -77.26 REMARK 500 ALA A 557 -16.09 164.34 REMARK 500 ASP A 562 -78.60 -106.55 REMARK 500 GLU A 574 -131.44 54.95 REMARK 500 ARG A 617 -153.73 66.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 123 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 124 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 125 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 121 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 122 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2G9F RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN DIFFERENT SPACE GROUP DBREF 2G9G A 451 651 GB 30517852 AAP03060 451 651 SEQADV 2G9G MET A 431 GB 30517852 CLONING ARTIFACT SEQADV 2G9G GLY A 432 GB 30517852 CLONING ARTIFACT SEQADV 2G9G SER A 433 GB 30517852 CLONING ARTIFACT SEQADV 2G9G SER A 434 GB 30517852 CLONING ARTIFACT SEQADV 2G9G HIS A 435 GB 30517852 EXPRESSION TAG SEQADV 2G9G HIS A 436 GB 30517852 EXPRESSION TAG SEQADV 2G9G HIS A 437 GB 30517852 EXPRESSION TAG SEQADV 2G9G HIS A 438 GB 30517852 EXPRESSION TAG SEQADV 2G9G HIS A 439 GB 30517852 EXPRESSION TAG SEQADV 2G9G HIS A 440 GB 30517852 EXPRESSION TAG SEQADV 2G9G SER A 441 GB 30517852 CLONING ARTIFACT SEQADV 2G9G SER A 442 GB 30517852 CLONING ARTIFACT SEQADV 2G9G GLY A 443 GB 30517852 CLONING ARTIFACT SEQADV 2G9G LEU A 444 GB 30517852 CLONING ARTIFACT SEQADV 2G9G VAL A 445 GB 30517852 CLONING ARTIFACT SEQADV 2G9G PRO A 446 GB 30517852 CLONING ARTIFACT SEQADV 2G9G ARG A 447 GB 30517852 CLONING ARTIFACT SEQADV 2G9G GLY A 448 GB 30517852 CLONING ARTIFACT SEQADV 2G9G SER A 449 GB 30517852 CLONING ARTIFACT SEQADV 2G9G HIS A 450 GB 30517852 CLONING ARTIFACT SEQRES 1 A 221 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 221 LEU VAL PRO ARG GLY SER HIS GLU LEU GLY GLY ARG VAL SEQRES 3 A 221 SER GLY SER LEU ALA TRP ARG VAL ALA ARG GLY GLU THR SEQRES 4 A 221 GLY LEU GLU ARG LYS GLU ILE LEU PHE ILE PRO SER GLU SEQRES 5 A 221 ASN GLU LYS ILE SER LYS GLN PHE HIS LEU ARG TYR ASP SEQRES 6 A 221 ILE VAL ARG ASP ARG TYR ILE ARG VAL SER ASP ASN ASN SEQRES 7 A 221 THR ASN ILE SER GLY TRP GLU ASN GLY VAL TRP LYS MET SEQRES 8 A 221 GLU SER ILE PHE ARG LYS VAL GLU LYS ASP TRP ASN MET SEQRES 9 A 221 VAL TYR LEU ALA ARG LYS GLU GLY SER SER PHE ALA TYR SEQRES 10 A 221 ILE SER TRP LYS PHE GLU CYS GLY SER ALA GLY LEU LYS SEQRES 11 A 221 VAL ASP THR VAL SER ILE ARG THR SER SER GLN SER PHE SEQRES 12 A 221 GLU SER GLY SER VAL ARG TRP LYS LEU ARG SER GLU THR SEQRES 13 A 221 ALA GLN VAL ASN LEU LEU GLY ASP LYS ASN LEU ARG SER SEQRES 14 A 221 TYR ASN ASP PHE SER GLY ALA THR GLU VAL THR LEU GLU SEQRES 15 A 221 ALA GLU LEU SER ARG GLY ASP GLY ASP VAL ALA TRP GLN SEQRES 16 A 221 HIS THR GLN LEU PHE ARG GLN SER LEU ASN ASP SER GLY SEQRES 17 A 221 GLU ASN GLY LEU GLU ILE ILE ILE THR PHE ASN ASP LEU HET SO4 A 123 5 HET SO4 A 124 5 HET SO4 A 125 5 HET GOL A 121 6 HET GOL A 122 6 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 SO4 3(O4 S 2-) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 7 HOH *115(H2 O) HELIX 1 1 SER A 481 LYS A 488 1 8 HELIX 2 2 SER A 505 ASN A 507 5 3 HELIX 3 3 TRP A 514 VAL A 518 5 5 HELIX 4 4 ASP A 619 GLN A 625 5 7 SHEET 1 A 3 ARG A 455 VAL A 456 0 SHEET 2 A 3 LEU A 460 TRP A 462 -1 O TRP A 462 N ARG A 455 SHEET 3 A 3 LEU A 477 PHE A 478 -1 O LEU A 477 N ALA A 461 SHEET 1 B 8 ASN A 510 SER A 512 0 SHEET 2 B 8 ARG A 500 ARG A 503 -1 N TYR A 501 O ILE A 511 SHEET 3 B 8 GLN A 489 ASP A 495 -1 N ASP A 495 O ARG A 500 SHEET 4 B 8 LEU A 642 ASP A 650 -1 O ILE A 646 N PHE A 490 SHEET 5 B 8 LEU A 559 SER A 572 -1 N SER A 565 O ILE A 645 SHEET 6 B 8 THR A 627 SER A 633 -1 O PHE A 630 N SER A 569 SHEET 7 B 8 MET A 534 ARG A 539 -1 N LEU A 537 O LEU A 629 SHEET 8 B 8 ILE A 524 GLU A 529 -1 N LYS A 527 O TYR A 536 SHEET 1 C 6 ASN A 510 SER A 512 0 SHEET 2 C 6 ARG A 500 ARG A 503 -1 N TYR A 501 O ILE A 511 SHEET 3 C 6 GLN A 489 ASP A 495 -1 N ASP A 495 O ARG A 500 SHEET 4 C 6 LEU A 642 ASP A 650 -1 O ILE A 646 N PHE A 490 SHEET 5 C 6 LEU A 559 SER A 572 -1 N SER A 565 O ILE A 645 SHEET 6 C 6 ASP A 594 TYR A 600 -1 O TYR A 600 N VAL A 564 SHEET 1 D 5 MET A 521 GLU A 522 0 SHEET 2 D 5 PHE A 545 GLU A 553 -1 O TYR A 547 N GLU A 522 SHEET 3 D 5 GLU A 608 SER A 616 -1 O LEU A 615 N ALA A 546 SHEET 4 D 5 SER A 577 ARG A 583 -1 N ARG A 583 O THR A 610 SHEET 5 D 5 GLN A 588 LEU A 591 -1 O VAL A 589 N LEU A 582 SITE 1 AC1 2 ARG A 579 LYS A 581 SITE 1 AC2 6 HOH A 60 LYS A 527 GLU A 529 LYS A 530 SITE 2 AC2 6 ASP A 531 GLN A 571 SITE 1 AC3 5 HOH A 7 SER A 577 ARG A 579 SER A 616 SITE 2 AC3 5 ARG A 617 SITE 1 AC4 4 TRP A 519 LYS A 551 ARG A 583 THR A 610 SITE 1 AC5 4 HOH A 112 PHE A 573 ARG A 598 ARG A 631 CRYST1 71.732 40.747 66.506 90.00 95.34 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013941 0.000000 0.001303 0.00000 SCALE2 0.000000 0.024542 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015102 0.00000