HEADER HYDROLASE 07-MAR-06 2GA3 TITLE STRUCTURE OF S102T E. COLI ALKALINE PHOSPHATASE-PHOSPHATE INTERMEDIATE TITLE 2 AT 2.20A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALKALINE PHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: APASE; COMPND 5 EC: 3.1.3.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: PHOA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: SM547; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PEK625 KEYWDS MUTAGENESIS, SIDE CHAIN CONFORMATION, COVALENT INTERMEDIATE, RATE- KEYWDS 2 DETERMINING STEP, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.WANG,E.R.KANTROWITZ REVDAT 6 20-NOV-24 2GA3 1 REMARK REVDAT 5 30-AUG-23 2GA3 1 REMARK REVDAT 4 20-OCT-21 2GA3 1 REMARK SEQADV LINK REVDAT 3 18-OCT-17 2GA3 1 REMARK REVDAT 2 24-FEB-09 2GA3 1 VERSN REVDAT 1 10-OCT-06 2GA3 0 JRNL AUTH J.WANG,E.R.KANTROWITZ JRNL TITL TRAPPING THE TETRAHEDRAL INTERMEDIATE IN THE ALKALINE JRNL TITL 2 PHOSPHATASE REACTION BY SUBSTITUTION OF THE ACTIVE SITE JRNL TITL 3 SERINE WITH THREONINE. JRNL REF PROTEIN SCI. V. 15 2395 2006 JRNL REFN ISSN 0961-8368 JRNL PMID 17008720 JRNL DOI 10.1110/PS.062351506 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 89.2 REMARK 3 NUMBER OF REFLECTIONS : 55150 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 5598 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6618 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 495 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.330 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GA3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000036878. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-04 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55150 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 14.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.2 REMARK 200 DATA REDUNDANCY : 3.470 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.33 REMARK 200 R MERGE FOR SHELL (I) : 0.35200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1Y6V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0M AMMONIUM SULFATE, 100MM TRIS, REMARK 280 10MM MAGNESIUM CHLORIDE, 0.01MM ZINC CHLORIDE, PH 9.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 38.11500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 82.48500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 96.45000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 38.11500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 82.48500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 96.45000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 38.11500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 82.48500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 96.45000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 38.11500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 82.48500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 96.45000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS THE BIOLOGICALLY ACTIVE DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -163.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 3 -37.91 -161.15 REMARK 500 ASN A 9 118.93 -168.71 REMARK 500 ALA A 88 -163.58 -101.23 REMARK 500 ALA A 217 -179.18 -170.29 REMARK 500 ASP A 280 -79.78 -70.68 REMARK 500 ASN A 293 157.94 81.89 REMARK 500 ASN B 9 94.26 -160.42 REMARK 500 ALA B 88 -160.12 -104.31 REMARK 500 LEU B 151 -18.46 -49.11 REMARK 500 GLU B 184 2.31 -65.79 REMARK 500 ALA B 217 -172.09 -176.16 REMARK 500 GLU B 219 -3.10 -55.96 REMARK 500 ALA B 249 103.58 -162.48 REMARK 500 ASN B 293 143.44 68.14 REMARK 500 SER B 325 2.77 -66.99 REMARK 500 THR B 367 -163.63 -160.84 REMARK 500 HIS B 372 -169.28 -125.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 451 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 51 OD2 REMARK 620 2 TPO A 102 OG1 111.2 REMARK 620 3 ASP A 369 OD1 95.0 88.4 REMARK 620 4 HIS A 370 NE2 140.6 106.2 97.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 452 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 51 OD1 REMARK 620 2 GLU A 322 OE2 77.0 REMARK 620 3 HOH A 459 O 76.6 103.5 REMARK 620 4 HOH A 460 O 173.7 101.8 109.6 REMARK 620 5 HOH A 461 O 104.4 172.7 83.7 76.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 450 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TPO A 102 O3P REMARK 620 2 ASP A 327 OD1 103.2 REMARK 620 3 ASP A 327 OD2 79.7 51.9 REMARK 620 4 HIS A 331 NE2 148.0 94.2 90.7 REMARK 620 5 HIS A 412 NE2 111.1 101.9 153.8 90.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 451 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 51 OD1 REMARK 620 2 TPO B 102 O2P 101.1 REMARK 620 3 TPO B 102 OG1 111.0 57.9 REMARK 620 4 ASP B 369 OD1 90.3 146.1 88.2 REMARK 620 5 HIS B 370 NE2 138.8 96.6 110.0 95.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 452 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 51 OD2 REMARK 620 2 THR B 155 OG1 85.1 REMARK 620 3 GLU B 322 OE2 83.4 64.5 REMARK 620 4 HOH B 959 O 86.2 166.8 104.7 REMARK 620 5 HOH B 960 O 172.8 94.4 102.9 95.3 REMARK 620 6 HOH B 961 O 94.7 110.0 174.3 80.6 78.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 450 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TPO B 102 O2P REMARK 620 2 ASP B 327 OD2 81.6 REMARK 620 3 ASP B 327 OD1 101.1 53.0 REMARK 620 4 HIS B 331 NE2 156.8 93.3 93.5 REMARK 620 5 HIS B 412 NE2 102.0 156.1 103.4 91.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 450 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 451 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 452 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 450 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 451 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 452 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 458 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 958 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2G9Y RELATED DB: PDB REMARK 900 S102T PROTEIN NON-COVALENT COMPLEX WITH PHOSPHATE DBREF 2GA3 A 1 449 UNP P00634 PPB_ECOLI 23 471 DBREF 2GA3 B 1 449 UNP P00634 PPB_ECOLI 23 471 SEQADV 2GA3 TPO A 102 UNP P00634 SER 124 ENGINEERED MUTATION SEQADV 2GA3 TPO B 102 UNP P00634 SER 124 ENGINEERED MUTATION SEQRES 1 A 449 THR PRO GLU MET PRO VAL LEU GLU ASN ARG ALA ALA GLN SEQRES 2 A 449 GLY ASP ILE THR ALA PRO GLY GLY ALA ARG ARG LEU THR SEQRES 3 A 449 GLY ASP GLN THR ALA ALA LEU ARG ASP SER LEU SER ASP SEQRES 4 A 449 LYS PRO ALA LYS ASN ILE ILE LEU LEU ILE GLY ASP GLY SEQRES 5 A 449 MET GLY ASP SER GLU ILE THR ALA ALA ARG ASN TYR ALA SEQRES 6 A 449 GLU GLY ALA GLY GLY PHE PHE LYS GLY ILE ASP ALA LEU SEQRES 7 A 449 PRO LEU THR GLY GLN TYR THR HIS TYR ALA LEU ASN LYS SEQRES 8 A 449 LYS THR GLY LYS PRO ASP TYR VAL THR ASP TPO ALA ALA SEQRES 9 A 449 SER ALA THR ALA TRP SER THR GLY VAL LYS THR TYR ASN SEQRES 10 A 449 GLY ALA LEU GLY VAL ASP ILE HIS GLU LYS ASP HIS PRO SEQRES 11 A 449 THR ILE LEU GLU MET ALA LYS ALA ALA GLY LEU ALA THR SEQRES 12 A 449 GLY ASN VAL SER THR ALA GLU LEU GLN ASP ALA THR PRO SEQRES 13 A 449 ALA ALA LEU VAL ALA HIS VAL THR SER ARG LYS CYS TYR SEQRES 14 A 449 GLY PRO SER ALA THR SER GLU LYS CYS PRO GLY ASN ALA SEQRES 15 A 449 LEU GLU LYS GLY GLY LYS GLY SER ILE THR GLU GLN LEU SEQRES 16 A 449 LEU ASN ALA ARG ALA ASP VAL THR LEU GLY GLY GLY ALA SEQRES 17 A 449 LYS THR PHE ALA GLU THR ALA THR ALA GLY GLU TRP GLN SEQRES 18 A 449 GLY LYS THR LEU ARG GLU GLN ALA GLN ALA ARG GLY TYR SEQRES 19 A 449 GLN LEU VAL SER ASP ALA ALA SER LEU ASN SER VAL THR SEQRES 20 A 449 GLU ALA ASN GLN GLN LYS PRO LEU LEU GLY LEU PHE ALA SEQRES 21 A 449 ASP GLY ASN MET PRO VAL ARG TRP LEU GLY PRO LYS ALA SEQRES 22 A 449 THR TYR HIS GLY ASN ILE ASP LYS PRO ALA VAL THR CYS SEQRES 23 A 449 THR PRO ASN PRO GLN ARG ASN ASP SER VAL PRO THR LEU SEQRES 24 A 449 ALA GLN MET THR ASP LYS ALA ILE GLU LEU LEU SER LYS SEQRES 25 A 449 ASN GLU LYS GLY PHE PHE LEU GLN VAL GLU GLY ALA SER SEQRES 26 A 449 ILE ASP LYS GLN ASP HIS ALA ALA ASN PRO CYS GLY GLN SEQRES 27 A 449 ILE GLY GLU THR VAL ASP LEU ASP GLU ALA VAL GLN ARG SEQRES 28 A 449 ALA LEU GLU PHE ALA LYS LYS GLU GLY ASN THR LEU VAL SEQRES 29 A 449 ILE VAL THR ALA ASP HIS ALA HIS ALA SER GLN ILE VAL SEQRES 30 A 449 ALA PRO ASP THR LYS ALA PRO GLY LEU THR GLN ALA LEU SEQRES 31 A 449 ASN THR LYS ASP GLY ALA VAL MET VAL MET SER TYR GLY SEQRES 32 A 449 ASN SER GLU GLU ASP SER GLN GLU HIS THR GLY SER GLN SEQRES 33 A 449 LEU ARG ILE ALA ALA TYR GLY PRO HIS ALA ALA ASN VAL SEQRES 34 A 449 VAL GLY LEU THR ASP GLN THR ASP LEU PHE TYR THR MET SEQRES 35 A 449 LYS ALA ALA LEU GLY LEU LYS SEQRES 1 B 449 THR PRO GLU MET PRO VAL LEU GLU ASN ARG ALA ALA GLN SEQRES 2 B 449 GLY ASP ILE THR ALA PRO GLY GLY ALA ARG ARG LEU THR SEQRES 3 B 449 GLY ASP GLN THR ALA ALA LEU ARG ASP SER LEU SER ASP SEQRES 4 B 449 LYS PRO ALA LYS ASN ILE ILE LEU LEU ILE GLY ASP GLY SEQRES 5 B 449 MET GLY ASP SER GLU ILE THR ALA ALA ARG ASN TYR ALA SEQRES 6 B 449 GLU GLY ALA GLY GLY PHE PHE LYS GLY ILE ASP ALA LEU SEQRES 7 B 449 PRO LEU THR GLY GLN TYR THR HIS TYR ALA LEU ASN LYS SEQRES 8 B 449 LYS THR GLY LYS PRO ASP TYR VAL THR ASP TPO ALA ALA SEQRES 9 B 449 SER ALA THR ALA TRP SER THR GLY VAL LYS THR TYR ASN SEQRES 10 B 449 GLY ALA LEU GLY VAL ASP ILE HIS GLU LYS ASP HIS PRO SEQRES 11 B 449 THR ILE LEU GLU MET ALA LYS ALA ALA GLY LEU ALA THR SEQRES 12 B 449 GLY ASN VAL SER THR ALA GLU LEU GLN ASP ALA THR PRO SEQRES 13 B 449 ALA ALA LEU VAL ALA HIS VAL THR SER ARG LYS CYS TYR SEQRES 14 B 449 GLY PRO SER ALA THR SER GLU LYS CYS PRO GLY ASN ALA SEQRES 15 B 449 LEU GLU LYS GLY GLY LYS GLY SER ILE THR GLU GLN LEU SEQRES 16 B 449 LEU ASN ALA ARG ALA ASP VAL THR LEU GLY GLY GLY ALA SEQRES 17 B 449 LYS THR PHE ALA GLU THR ALA THR ALA GLY GLU TRP GLN SEQRES 18 B 449 GLY LYS THR LEU ARG GLU GLN ALA GLN ALA ARG GLY TYR SEQRES 19 B 449 GLN LEU VAL SER ASP ALA ALA SER LEU ASN SER VAL THR SEQRES 20 B 449 GLU ALA ASN GLN GLN LYS PRO LEU LEU GLY LEU PHE ALA SEQRES 21 B 449 ASP GLY ASN MET PRO VAL ARG TRP LEU GLY PRO LYS ALA SEQRES 22 B 449 THR TYR HIS GLY ASN ILE ASP LYS PRO ALA VAL THR CYS SEQRES 23 B 449 THR PRO ASN PRO GLN ARG ASN ASP SER VAL PRO THR LEU SEQRES 24 B 449 ALA GLN MET THR ASP LYS ALA ILE GLU LEU LEU SER LYS SEQRES 25 B 449 ASN GLU LYS GLY PHE PHE LEU GLN VAL GLU GLY ALA SER SEQRES 26 B 449 ILE ASP LYS GLN ASP HIS ALA ALA ASN PRO CYS GLY GLN SEQRES 27 B 449 ILE GLY GLU THR VAL ASP LEU ASP GLU ALA VAL GLN ARG SEQRES 28 B 449 ALA LEU GLU PHE ALA LYS LYS GLU GLY ASN THR LEU VAL SEQRES 29 B 449 ILE VAL THR ALA ASP HIS ALA HIS ALA SER GLN ILE VAL SEQRES 30 B 449 ALA PRO ASP THR LYS ALA PRO GLY LEU THR GLN ALA LEU SEQRES 31 B 449 ASN THR LYS ASP GLY ALA VAL MET VAL MET SER TYR GLY SEQRES 32 B 449 ASN SER GLU GLU ASP SER GLN GLU HIS THR GLY SER GLN SEQRES 33 B 449 LEU ARG ILE ALA ALA TYR GLY PRO HIS ALA ALA ASN VAL SEQRES 34 B 449 VAL GLY LEU THR ASP GLN THR ASP LEU PHE TYR THR MET SEQRES 35 B 449 LYS ALA ALA LEU GLY LEU LYS MODRES 2GA3 TPO A 102 THR PHOSPHOTHREONINE MODRES 2GA3 TPO B 102 THR PHOSPHOTHREONINE HET TPO A 102 11 HET TPO B 102 11 HET ZN A 450 1 HET ZN A 451 1 HET MG A 452 1 HET SO4 A 458 5 HET ZN B 450 1 HET ZN B 451 1 HET MG B 452 1 HET SO4 B 958 5 HETNAM TPO PHOSPHOTHREONINE HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 TPO 2(C4 H10 N O6 P) FORMUL 3 ZN 4(ZN 2+) FORMUL 5 MG 2(MG 2+) FORMUL 6 SO4 2(O4 S 2-) FORMUL 11 HOH *495(H2 O) HELIX 1 1 GLN A 29 ASP A 35 1 7 HELIX 2 2 GLY A 54 GLU A 66 1 13 HELIX 3 3 GLY A 74 LEU A 78 5 5 HELIX 4 4 ASP A 101 GLY A 112 1 12 HELIX 5 5 THR A 131 ALA A 139 1 9 HELIX 6 6 ASP A 153 ALA A 158 1 6 HELIX 7 7 GLY A 170 CYS A 178 1 9 HELIX 8 8 ALA A 182 GLY A 186 5 5 HELIX 9 9 SER A 190 ARG A 199 1 10 HELIX 10 10 ALA A 208 GLU A 213 5 6 HELIX 11 11 THR A 224 ARG A 232 1 9 HELIX 12 12 ASP A 239 VAL A 246 1 8 HELIX 13 13 THR A 298 SER A 311 1 14 HELIX 14 14 ALA A 324 ALA A 332 1 9 HELIX 15 15 ASN A 334 GLY A 360 1 27 HELIX 16 16 HIS A 425 VAL A 430 5 6 HELIX 17 17 GLN A 435 LEU A 446 1 12 HELIX 18 18 GLN B 29 ASP B 35 1 7 HELIX 19 19 GLY B 54 GLU B 66 1 13 HELIX 20 20 GLY B 74 LEU B 78 5 5 HELIX 21 21 ASP B 101 GLY B 112 1 12 HELIX 22 22 THR B 131 ALA B 139 1 9 HELIX 23 23 ASP B 153 ALA B 158 1 6 HELIX 24 24 GLY B 170 CYS B 178 1 9 HELIX 25 25 ALA B 182 GLY B 186 5 5 HELIX 26 26 SER B 190 ARG B 199 1 10 HELIX 27 27 GLY B 207 GLU B 213 5 7 HELIX 28 28 THR B 224 ARG B 232 1 9 HELIX 29 29 ASP B 239 ASN B 244 1 6 HELIX 30 30 HIS B 276 LYS B 281 1 6 HELIX 31 31 THR B 298 LYS B 312 1 15 HELIX 32 32 ALA B 324 ALA B 332 1 9 HELIX 33 33 ASN B 334 GLY B 360 1 27 HELIX 34 34 HIS B 425 VAL B 430 5 6 HELIX 35 35 GLN B 435 GLY B 447 1 13 SHEET 1 A10 GLN A 235 VAL A 237 0 SHEET 2 A10 LEU A 255 LEU A 258 1 O LEU A 258 N VAL A 237 SHEET 3 A10 VAL A 202 GLY A 206 1 N THR A 203 O GLY A 257 SHEET 4 A10 ALA A 142 GLU A 150 1 N ALA A 149 O GLY A 206 SHEET 5 A10 PHE A 317 GLY A 323 1 O GLN A 320 N VAL A 146 SHEET 6 A10 ASN A 44 GLY A 50 1 N ILE A 49 O VAL A 321 SHEET 7 A10 THR A 362 THR A 367 1 O ILE A 365 N LEU A 48 SHEET 8 A10 LEU A 417 TYR A 422 -1 O ALA A 420 N VAL A 366 SHEET 9 A10 LEU A 80 THR A 85 -1 N LEU A 80 O ALA A 421 SHEET 10 A10 GLY A 431 ASP A 434 1 O THR A 433 N THR A 85 SHEET 1 B 2 ALA A 88 LEU A 89 0 SHEET 2 B 2 PRO A 96 ASP A 97 -1 O ASP A 97 N ALA A 88 SHEET 1 C 2 TRP A 268 LEU A 269 0 SHEET 2 C 2 THR A 287 PRO A 288 -1 O THR A 287 N LEU A 269 SHEET 1 D 3 GLN A 375 VAL A 377 0 SHEET 2 D 3 VAL A 397 TYR A 402 -1 O SER A 401 N GLN A 375 SHEET 3 D 3 LEU A 386 ASN A 391 -1 N LEU A 386 O TYR A 402 SHEET 1 E10 GLN B 235 VAL B 237 0 SHEET 2 E10 LEU B 255 LEU B 258 1 O LEU B 256 N GLN B 235 SHEET 3 E10 VAL B 202 GLY B 206 1 N THR B 203 O GLY B 257 SHEET 4 E10 ALA B 142 GLU B 150 1 N ASN B 145 O VAL B 202 SHEET 5 E10 PHE B 317 GLY B 323 1 O GLN B 320 N VAL B 146 SHEET 6 E10 ASN B 44 GLY B 50 1 N LEU B 47 O LEU B 319 SHEET 7 E10 THR B 362 THR B 367 1 O ILE B 365 N LEU B 48 SHEET 8 E10 LEU B 417 TYR B 422 -1 O TYR B 422 N VAL B 364 SHEET 9 E10 LEU B 80 THR B 85 -1 N TYR B 84 O LEU B 417 SHEET 10 E10 GLY B 431 ASP B 434 1 O GLY B 431 N GLN B 83 SHEET 1 F 2 ALA B 88 LEU B 89 0 SHEET 2 F 2 PRO B 96 ASP B 97 -1 O ASP B 97 N ALA B 88 SHEET 1 G 2 TRP B 268 LEU B 269 0 SHEET 2 G 2 THR B 287 PRO B 288 -1 O THR B 287 N LEU B 269 SHEET 1 H 3 GLN B 375 VAL B 377 0 SHEET 2 H 3 VAL B 397 TYR B 402 -1 O SER B 401 N GLN B 375 SHEET 3 H 3 LEU B 386 ASN B 391 -1 N LEU B 386 O TYR B 402 SSBOND 1 CYS A 168 CYS A 178 1555 1555 2.04 SSBOND 2 CYS A 286 CYS A 336 1555 1555 2.03 SSBOND 3 CYS B 168 CYS B 178 1555 1555 2.03 SSBOND 4 CYS B 286 CYS B 336 1555 1555 2.03 LINK C ASP A 101 N TPO A 102 1555 1555 1.33 LINK C TPO A 102 N ALA A 103 1555 1555 1.33 LINK C ASP B 101 N TPO B 102 1555 1555 1.33 LINK C TPO B 102 N ALA B 103 1555 1555 1.33 LINK OD2 ASP A 51 ZN ZN A 451 1555 1555 2.02 LINK OD1 ASP A 51 MG MG A 452 1555 1555 2.23 LINK O3P TPO A 102 ZN ZN A 450 1555 1555 1.81 LINK OG1 TPO A 102 ZN ZN A 451 1555 1555 2.41 LINK OE2 GLU A 322 MG MG A 452 1555 1555 2.02 LINK OD1 ASP A 327 ZN ZN A 450 1555 1555 2.52 LINK OD2 ASP A 327 ZN ZN A 450 1555 1555 2.52 LINK NE2 HIS A 331 ZN ZN A 450 1555 1555 2.09 LINK OD1 ASP A 369 ZN ZN A 451 1555 1555 2.12 LINK NE2 HIS A 370 ZN ZN A 451 1555 1555 1.91 LINK NE2 HIS A 412 ZN ZN A 450 1555 1555 2.03 LINK MG MG A 452 O HOH A 459 1555 1555 2.53 LINK MG MG A 452 O HOH A 460 1555 1555 2.19 LINK MG MG A 452 O HOH A 461 1555 1555 2.21 LINK OD1 ASP B 51 ZN ZN B 451 1555 1555 1.98 LINK OD2 ASP B 51 MG MG B 452 1555 1555 2.12 LINK O2P TPO B 102 ZN ZN B 450 1555 1555 1.80 LINK O2P TPO B 102 ZN ZN B 451 1555 1555 2.68 LINK OG1 TPO B 102 ZN ZN B 451 1555 1555 2.50 LINK OG1 THR B 155 MG MG B 452 1555 1555 2.93 LINK OE2 GLU B 322 MG MG B 452 1555 1555 2.10 LINK OD2 ASP B 327 ZN ZN B 450 1555 1555 2.53 LINK OD1 ASP B 327 ZN ZN B 450 1555 1555 2.39 LINK NE2 HIS B 331 ZN ZN B 450 1555 1555 2.00 LINK OD1 ASP B 369 ZN ZN B 451 1555 1555 2.06 LINK NE2 HIS B 370 ZN ZN B 451 1555 1555 2.01 LINK NE2 HIS B 412 ZN ZN B 450 1555 1555 2.04 LINK MG MG B 452 O HOH B 959 1555 1555 2.27 LINK MG MG B 452 O HOH B 960 1555 1555 2.28 LINK MG MG B 452 O HOH B 961 1555 1555 2.19 SITE 1 AC1 5 TPO A 102 ASP A 327 HIS A 331 HIS A 412 SITE 2 AC1 5 ZN A 451 SITE 1 AC2 6 ASP A 51 TPO A 102 ASP A 327 ASP A 369 SITE 2 AC2 6 HIS A 370 ZN A 450 SITE 1 AC3 6 ASP A 51 THR A 155 GLU A 322 HOH A 459 SITE 2 AC3 6 HOH A 460 HOH A 461 SITE 1 AC4 5 TPO B 102 ASP B 327 HIS B 331 HIS B 412 SITE 2 AC4 5 ZN B 451 SITE 1 AC5 6 ASP B 51 TPO B 102 ASP B 327 ASP B 369 SITE 2 AC5 6 HIS B 370 ZN B 450 SITE 1 AC6 6 ASP B 51 THR B 155 GLU B 322 HOH B 959 SITE 2 AC6 6 HOH B 960 HOH B 961 SITE 1 AC7 4 ARG A 267 TRP A 268 ARG A 292 LYS B 449 SITE 1 AC8 3 ARG B 267 TRP B 268 ARG B 292 CRYST1 76.230 164.970 192.900 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013118 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006062 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005184 0.00000