HEADER OXIDOREDUCTASE 11-MAR-06 2GBU TITLE C6A/C111A/C57A/C146A APO CUZN SUPEROXIDE DISMUTASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE [CU-ZN]; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: CU/ZN SUPEROXIDE DISMUTASE; COMPND 5 EC: 1.15.1.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SOD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21/DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PACA KEYWDS OXIDOREDUCTASE, HUMAN CU/ZN SUPEROXIDE DISMUTASE, CYSTEIN-FREE EXPDTA X-RAY DIFFRACTION AUTHOR A.HORNBERG,D.T.LOGAN,S.L.MARKLUND,M.OLIVEBERG REVDAT 6 25-OCT-23 2GBU 1 REMARK REVDAT 5 10-NOV-21 2GBU 1 SEQADV REVDAT 4 23-MAY-18 2GBU 1 REMARK REVDAT 3 13-JUL-11 2GBU 1 VERSN REVDAT 2 24-FEB-09 2GBU 1 VERSN REVDAT 1 02-JAN-07 2GBU 0 JRNL AUTH A.HORNBERG,D.T.LOGAN,S.L.MARKLUND,M.OLIVEBERG JRNL TITL THE COUPLING BETWEEN DISULPHIDE STATUS, METALLATION AND JRNL TITL 2 DIMER INTERFACE STRENGTH IN CU/ZN SUPEROXIDE DISMUTASE JRNL REF J.MOL.BIOL. V. 365 333 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17070542 JRNL DOI 10.1016/J.JMB.2006.09.048 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 38832 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1953 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2649 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.2840 REMARK 3 BIN FREE R VALUE SET COUNT : 133 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4002 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 259 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.87000 REMARK 3 B22 (A**2) : 6.28000 REMARK 3 B33 (A**2) : -3.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.79000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.205 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.178 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.179 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.747 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4066 ; 0.007 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3645 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5496 ; 1.061 ; 1.939 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8510 ; 0.660 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 545 ; 6.050 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 171 ;38.654 ;25.556 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 643 ;11.962 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;11.012 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 620 ; 0.062 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4678 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 739 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 621 ; 0.173 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3563 ; 0.173 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1946 ; 0.159 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2408 ; 0.079 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 235 ; 0.125 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.063 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 34 ; 0.193 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.113 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3549 ; 0.499 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1182 ; 0.068 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4271 ; 0.585 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1668 ; 0.961 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1225 ; 1.345 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 153 REMARK 3 ORIGIN FOR THE GROUP (A): -12.9308 -2.9374 20.9595 REMARK 3 T TENSOR REMARK 3 T11: -0.0960 T22: -0.1532 REMARK 3 T33: -0.0897 T12: -0.0608 REMARK 3 T13: 0.0136 T23: -0.0265 REMARK 3 L TENSOR REMARK 3 L11: 2.8461 L22: 1.4835 REMARK 3 L33: 4.8554 L12: 0.3183 REMARK 3 L13: 1.2102 L23: -0.2165 REMARK 3 S TENSOR REMARK 3 S11: 0.0357 S12: 0.0680 S13: -0.1595 REMARK 3 S21: -0.0364 S22: -0.0626 S23: -0.0535 REMARK 3 S31: 0.1502 S32: -0.2909 S33: 0.0268 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 153 REMARK 3 ORIGIN FOR THE GROUP (A): -3.8552 3.2768 46.0547 REMARK 3 T TENSOR REMARK 3 T11: -0.1228 T22: -0.1002 REMARK 3 T33: -0.0978 T12: -0.0203 REMARK 3 T13: -0.0036 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 3.0144 L22: 0.8733 REMARK 3 L33: 3.8579 L12: -0.0563 REMARK 3 L13: -0.2020 L23: -0.0266 REMARK 3 S TENSOR REMARK 3 S11: 0.0533 S12: -0.2574 S13: -0.0581 REMARK 3 S21: 0.0639 S22: 0.0062 S23: 0.0227 REMARK 3 S31: 0.0877 S32: -0.0706 S33: -0.0595 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 153 REMARK 3 ORIGIN FOR THE GROUP (A): 29.3538 11.3719 30.2515 REMARK 3 T TENSOR REMARK 3 T11: -0.1128 T22: -0.1633 REMARK 3 T33: -0.0889 T12: -0.0319 REMARK 3 T13: 0.0047 T23: -0.0111 REMARK 3 L TENSOR REMARK 3 L11: 5.2341 L22: 1.2707 REMARK 3 L33: 4.6151 L12: 0.5718 REMARK 3 L13: -0.5285 L23: 0.3502 REMARK 3 S TENSOR REMARK 3 S11: 0.0748 S12: -0.3906 S13: 0.2998 REMARK 3 S21: -0.0761 S22: 0.0483 S23: -0.0432 REMARK 3 S31: -0.2085 S32: 0.2498 S33: -0.1232 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 153 REMARK 3 ORIGIN FOR THE GROUP (A): 23.0829 5.0498 8.3130 REMARK 3 T TENSOR REMARK 3 T11: -0.0701 T22: -0.2004 REMARK 3 T33: -0.0737 T12: -0.0304 REMARK 3 T13: -0.0074 T23: 0.0201 REMARK 3 L TENSOR REMARK 3 L11: 3.3333 L22: 2.1571 REMARK 3 L33: 7.0345 L12: -0.5038 REMARK 3 L13: -0.0658 L23: 0.5773 REMARK 3 S TENSOR REMARK 3 S11: 0.0315 S12: 0.4811 S13: -0.1582 REMARK 3 S21: -0.0645 S22: -0.0340 S23: 0.0916 REMARK 3 S31: 0.0302 S32: -0.1055 S33: 0.0025 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2GBU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000036931. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I711 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.092 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38835 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.21200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1HL4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG4000, 0.1M NA CACODYLATE, 50MM REMARK 280 NAAC, 1MM EDTA, 1MM NAN3, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 78.30700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 17.21350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 78.30700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 17.21350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER C 68 REMARK 465 ARG C 69 REMARK 465 LYS C 70 REMARK 465 HIS C 71 REMARK 465 GLY C 72 REMARK 465 GLY C 73 REMARK 465 PRO C 74 REMARK 465 LYS C 75 REMARK 465 ASP C 76 REMARK 465 GLU C 77 REMARK 465 GLU C 78 REMARK 465 ARG C 79 REMARK 465 ASP C 125 REMARK 465 LEU C 126 REMARK 465 GLY C 127 REMARK 465 LYS C 128 REMARK 465 GLY C 129 REMARK 465 GLY C 130 REMARK 465 ASN C 131 REMARK 465 GLU C 132 REMARK 465 GLU C 133 REMARK 465 SER C 134 REMARK 465 THR C 135 REMARK 465 LYS C 136 REMARK 465 THR C 137 REMARK 465 GLY C 138 REMARK 465 ASN C 139 REMARK 465 ALA C 140 REMARK 465 GLY C 141 REMARK 465 ALA D 1 REMARK 465 LEU D 67 REMARK 465 SER D 68 REMARK 465 ARG D 69 REMARK 465 LYS D 70 REMARK 465 HIS D 71 REMARK 465 GLY D 72 REMARK 465 GLY D 73 REMARK 465 PRO D 74 REMARK 465 LYS D 75 REMARK 465 ASP D 76 REMARK 465 GLU D 77 REMARK 465 GLU D 78 REMARK 465 ASP D 125 REMARK 465 LEU D 126 REMARK 465 GLY D 127 REMARK 465 LYS D 128 REMARK 465 GLY D 129 REMARK 465 GLY D 130 REMARK 465 ASN D 131 REMARK 465 GLU D 132 REMARK 465 GLU D 133 REMARK 465 SER D 134 REMARK 465 THR D 135 REMARK 465 LYS D 136 REMARK 465 THR D 137 REMARK 465 GLY D 138 REMARK 465 ASN D 139 REMARK 465 ALA D 140 REMARK 465 GLY D 141 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 11 38.76 -86.55 REMARK 500 SER A 98 86.87 -152.12 REMARK 500 SER B 98 87.53 -151.12 REMARK 500 ASN C 65 77.56 -155.11 REMARK 500 PRO C 66 -166.35 -70.53 REMARK 500 ASN D 65 67.85 -151.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HL4 RELATED DB: PDB REMARK 900 APO CUZN SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 2GBT RELATED DB: PDB REMARK 900 C6A/C111A APO CUZN SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 2GBV RELATED DB: PDB REMARK 900 C6A/C111A/C57A/C146A HOLO CUZN SUPEROXIDE DISMUTASE DBREF 2GBU A 1 153 UNP P00441 SODC_HUMAN 1 153 DBREF 2GBU B 1 153 UNP P00441 SODC_HUMAN 1 153 DBREF 2GBU C 1 153 UNP P00441 SODC_HUMAN 1 153 DBREF 2GBU D 1 153 UNP P00441 SODC_HUMAN 1 153 SEQADV 2GBU ALA A 6 UNP P00441 CYS 6 ENGINEERED MUTATION SEQADV 2GBU ALA A 57 UNP P00441 CYS 57 ENGINEERED MUTATION SEQADV 2GBU ALA A 111 UNP P00441 CYS 111 ENGINEERED MUTATION SEQADV 2GBU ALA A 146 UNP P00441 CYS 146 ENGINEERED MUTATION SEQADV 2GBU ALA B 6 UNP P00441 CYS 6 ENGINEERED MUTATION SEQADV 2GBU ALA B 57 UNP P00441 CYS 57 ENGINEERED MUTATION SEQADV 2GBU ALA B 111 UNP P00441 CYS 111 ENGINEERED MUTATION SEQADV 2GBU ALA B 146 UNP P00441 CYS 146 ENGINEERED MUTATION SEQADV 2GBU ALA C 6 UNP P00441 CYS 6 ENGINEERED MUTATION SEQADV 2GBU ALA C 57 UNP P00441 CYS 57 ENGINEERED MUTATION SEQADV 2GBU ALA C 111 UNP P00441 CYS 111 ENGINEERED MUTATION SEQADV 2GBU ALA C 146 UNP P00441 CYS 146 ENGINEERED MUTATION SEQADV 2GBU ALA D 6 UNP P00441 CYS 6 ENGINEERED MUTATION SEQADV 2GBU ALA D 57 UNP P00441 CYS 57 ENGINEERED MUTATION SEQADV 2GBU ALA D 111 UNP P00441 CYS 111 ENGINEERED MUTATION SEQADV 2GBU ALA D 146 UNP P00441 CYS 146 ENGINEERED MUTATION SEQRES 1 A 153 ALA THR LYS ALA VAL ALA VAL LEU LYS GLY ASP GLY PRO SEQRES 2 A 153 VAL GLN GLY ILE ILE ASN PHE GLU GLN LYS GLU SER ASN SEQRES 3 A 153 GLY PRO VAL LYS VAL TRP GLY SER ILE LYS GLY LEU THR SEQRES 4 A 153 GLU GLY LEU HIS GLY PHE HIS VAL HIS GLU PHE GLY ASP SEQRES 5 A 153 ASN THR ALA GLY ALA THR SER ALA GLY PRO HIS PHE ASN SEQRES 6 A 153 PRO LEU SER ARG LYS HIS GLY GLY PRO LYS ASP GLU GLU SEQRES 7 A 153 ARG HIS VAL GLY ASP LEU GLY ASN VAL THR ALA ASP LYS SEQRES 8 A 153 ASP GLY VAL ALA ASP VAL SER ILE GLU ASP SER VAL ILE SEQRES 9 A 153 SER LEU SER GLY ASP HIS ALA ILE ILE GLY ARG THR LEU SEQRES 10 A 153 VAL VAL HIS GLU LYS ALA ASP ASP LEU GLY LYS GLY GLY SEQRES 11 A 153 ASN GLU GLU SER THR LYS THR GLY ASN ALA GLY SER ARG SEQRES 12 A 153 LEU ALA ALA GLY VAL ILE GLY ILE ALA GLN SEQRES 1 B 153 ALA THR LYS ALA VAL ALA VAL LEU LYS GLY ASP GLY PRO SEQRES 2 B 153 VAL GLN GLY ILE ILE ASN PHE GLU GLN LYS GLU SER ASN SEQRES 3 B 153 GLY PRO VAL LYS VAL TRP GLY SER ILE LYS GLY LEU THR SEQRES 4 B 153 GLU GLY LEU HIS GLY PHE HIS VAL HIS GLU PHE GLY ASP SEQRES 5 B 153 ASN THR ALA GLY ALA THR SER ALA GLY PRO HIS PHE ASN SEQRES 6 B 153 PRO LEU SER ARG LYS HIS GLY GLY PRO LYS ASP GLU GLU SEQRES 7 B 153 ARG HIS VAL GLY ASP LEU GLY ASN VAL THR ALA ASP LYS SEQRES 8 B 153 ASP GLY VAL ALA ASP VAL SER ILE GLU ASP SER VAL ILE SEQRES 9 B 153 SER LEU SER GLY ASP HIS ALA ILE ILE GLY ARG THR LEU SEQRES 10 B 153 VAL VAL HIS GLU LYS ALA ASP ASP LEU GLY LYS GLY GLY SEQRES 11 B 153 ASN GLU GLU SER THR LYS THR GLY ASN ALA GLY SER ARG SEQRES 12 B 153 LEU ALA ALA GLY VAL ILE GLY ILE ALA GLN SEQRES 1 C 153 ALA THR LYS ALA VAL ALA VAL LEU LYS GLY ASP GLY PRO SEQRES 2 C 153 VAL GLN GLY ILE ILE ASN PHE GLU GLN LYS GLU SER ASN SEQRES 3 C 153 GLY PRO VAL LYS VAL TRP GLY SER ILE LYS GLY LEU THR SEQRES 4 C 153 GLU GLY LEU HIS GLY PHE HIS VAL HIS GLU PHE GLY ASP SEQRES 5 C 153 ASN THR ALA GLY ALA THR SER ALA GLY PRO HIS PHE ASN SEQRES 6 C 153 PRO LEU SER ARG LYS HIS GLY GLY PRO LYS ASP GLU GLU SEQRES 7 C 153 ARG HIS VAL GLY ASP LEU GLY ASN VAL THR ALA ASP LYS SEQRES 8 C 153 ASP GLY VAL ALA ASP VAL SER ILE GLU ASP SER VAL ILE SEQRES 9 C 153 SER LEU SER GLY ASP HIS ALA ILE ILE GLY ARG THR LEU SEQRES 10 C 153 VAL VAL HIS GLU LYS ALA ASP ASP LEU GLY LYS GLY GLY SEQRES 11 C 153 ASN GLU GLU SER THR LYS THR GLY ASN ALA GLY SER ARG SEQRES 12 C 153 LEU ALA ALA GLY VAL ILE GLY ILE ALA GLN SEQRES 1 D 153 ALA THR LYS ALA VAL ALA VAL LEU LYS GLY ASP GLY PRO SEQRES 2 D 153 VAL GLN GLY ILE ILE ASN PHE GLU GLN LYS GLU SER ASN SEQRES 3 D 153 GLY PRO VAL LYS VAL TRP GLY SER ILE LYS GLY LEU THR SEQRES 4 D 153 GLU GLY LEU HIS GLY PHE HIS VAL HIS GLU PHE GLY ASP SEQRES 5 D 153 ASN THR ALA GLY ALA THR SER ALA GLY PRO HIS PHE ASN SEQRES 6 D 153 PRO LEU SER ARG LYS HIS GLY GLY PRO LYS ASP GLU GLU SEQRES 7 D 153 ARG HIS VAL GLY ASP LEU GLY ASN VAL THR ALA ASP LYS SEQRES 8 D 153 ASP GLY VAL ALA ASP VAL SER ILE GLU ASP SER VAL ILE SEQRES 9 D 153 SER LEU SER GLY ASP HIS ALA ILE ILE GLY ARG THR LEU SEQRES 10 D 153 VAL VAL HIS GLU LYS ALA ASP ASP LEU GLY LYS GLY GLY SEQRES 11 D 153 ASN GLU GLU SER THR LYS THR GLY ASN ALA GLY SER ARG SEQRES 12 D 153 LEU ALA ALA GLY VAL ILE GLY ILE ALA GLN FORMUL 5 HOH *259(H2 O) HELIX 1 1 GLU A 133 GLY A 138 1 6 HELIX 2 2 GLU B 133 GLY B 138 1 6 HELIX 3 3 ALA C 55 GLY C 61 5 7 HELIX 4 4 ALA D 55 GLY D 61 5 7 SHEET 1 A 5 ALA A 95 ASP A 101 0 SHEET 2 A 5 VAL A 29 LYS A 36 -1 N VAL A 29 O ASP A 101 SHEET 3 A 5 GLN A 15 GLN A 22 -1 N ASN A 19 O TRP A 32 SHEET 4 A 5 THR A 2 LEU A 8 -1 N ALA A 4 O PHE A 20 SHEET 5 A 5 GLY A 150 ILE A 151 -1 O GLY A 150 N VAL A 5 SHEET 1 B 4 ASP A 83 ALA A 89 0 SHEET 2 B 4 GLY A 41 HIS A 48 -1 N GLY A 41 O ALA A 89 SHEET 3 B 4 THR A 116 HIS A 120 -1 O THR A 116 N HIS A 48 SHEET 4 B 4 ARG A 143 VAL A 148 -1 O GLY A 147 N LEU A 117 SHEET 1 C 5 ALA B 95 ASP B 101 0 SHEET 2 C 5 VAL B 29 LYS B 36 -1 N ILE B 35 O ALA B 95 SHEET 3 C 5 GLN B 15 GLN B 22 -1 N ASN B 19 O TRP B 32 SHEET 4 C 5 THR B 2 LEU B 8 -1 N ALA B 4 O PHE B 20 SHEET 5 C 5 GLY B 150 ILE B 151 -1 O GLY B 150 N VAL B 5 SHEET 1 D 4 ASP B 83 ALA B 89 0 SHEET 2 D 4 GLY B 41 HIS B 48 -1 N PHE B 45 O GLY B 85 SHEET 3 D 4 THR B 116 HIS B 120 -1 O THR B 116 N HIS B 48 SHEET 4 D 4 ARG B 143 VAL B 148 -1 O LEU B 144 N VAL B 119 SHEET 1 E 5 ALA C 95 ASP C 101 0 SHEET 2 E 5 VAL C 29 LYS C 36 -1 N VAL C 31 O ILE C 99 SHEET 3 E 5 GLN C 15 GLN C 22 -1 N ASN C 19 O TRP C 32 SHEET 4 E 5 THR C 2 LEU C 8 -1 N THR C 2 O GLN C 22 SHEET 5 E 5 GLY C 150 ILE C 151 -1 O GLY C 150 N VAL C 5 SHEET 1 F 4 ASP C 83 ALA C 89 0 SHEET 2 F 4 GLY C 41 HIS C 48 -1 N GLY C 41 O ALA C 89 SHEET 3 F 4 THR C 116 HIS C 120 -1 O THR C 116 N HIS C 48 SHEET 4 F 4 ARG C 143 VAL C 148 -1 O GLY C 147 N LEU C 117 SHEET 1 G 5 ALA D 95 ASP D 101 0 SHEET 2 G 5 VAL D 29 LYS D 36 -1 N VAL D 31 O ILE D 99 SHEET 3 G 5 GLN D 15 GLU D 21 -1 N ASN D 19 O TRP D 32 SHEET 4 G 5 LYS D 3 LEU D 8 -1 N ALA D 6 O ILE D 18 SHEET 5 G 5 GLY D 150 ILE D 151 -1 O GLY D 150 N VAL D 5 SHEET 1 H 4 ASP D 83 ALA D 89 0 SHEET 2 H 4 GLY D 41 HIS D 48 -1 N GLY D 41 O ALA D 89 SHEET 3 H 4 THR D 116 HIS D 120 -1 O THR D 116 N HIS D 48 SHEET 4 H 4 ARG D 143 VAL D 148 -1 O GLY D 147 N LEU D 117 CRYST1 156.614 34.427 114.461 90.00 112.17 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006380 0.000000 0.002600 0.00000 SCALE2 0.000000 0.029050 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009430 0.00000