HEADER TRANSFERASE 14-MAR-06 2GCD TITLE TAO2 KINASE DOMAIN-STAUROSPORINE STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE TAO2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: THOUSAND AND ONE AMINO ACID PROTEIN 2; COMPND 5 EC: 2.7.1.37; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: TAO2; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS TAO2, MAP3K, INHIBITOR, STAUROSPORINE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.ZHOU,L.SUN,Y.GAO,S.EARNEST,M.H.COBB,E.J.GOLDSMITH REVDAT 4 13-NOV-24 2GCD 1 REMARK SEQADV LINK REVDAT 3 18-OCT-17 2GCD 1 REMARK REVDAT 2 24-FEB-09 2GCD 1 VERSN REVDAT 1 05-SEP-06 2GCD 0 JRNL AUTH T.J.ZHOU,L.G.SUN,Y.GAO,E.J.GOLDSMITH JRNL TITL CRYSTAL STRUCTURE OF THE MAP3K TAO2 KINASE DOMAIN BOUND BY JRNL TITL 2 AN INHIBITOR STAUROSPORINE. JRNL REF ACTA BIOCHIM.BIOPHYS.SINICA V. 38 385 2006 JRNL REFN ISSN 0582-9879 JRNL PMID 16761096 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 160.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 31259 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1585 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2008 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.3420 REMARK 3 BIN FREE R VALUE SET COUNT : 117 REMARK 3 BIN FREE R VALUE : 0.4190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4980 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 277 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.13000 REMARK 3 B22 (A**2) : 1.13000 REMARK 3 B33 (A**2) : -1.69000 REMARK 3 B12 (A**2) : 0.56000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.416 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.289 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.203 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.572 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5182 ; 0.033 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7032 ; 2.858 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 616 ; 8.350 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 246 ;40.478 ;23.984 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 908 ;22.049 ;15.033 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;22.756 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 748 ; 0.180 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3924 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2769 ; 0.282 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3535 ; 0.344 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 331 ; 0.186 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 58 ; 0.262 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.165 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3210 ; 1.809 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4976 ; 2.967 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2663 ; 3.515 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2056 ; 5.479 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2GCD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000036949. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31295 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.58000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.09400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.54700 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 47.32050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 15.77350 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 78.86750 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 63.09400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 31.54700 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 15.77350 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 47.32050 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 78.86750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 93.00950 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 161.09718 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 15.77350 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N MET A 231 O HOH A 404 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 68 CB GLU A 68 CG 0.169 REMARK 500 GLU A 68 CG GLU A 68 CD 0.126 REMARK 500 GLU A 98 CG GLU A 98 CD 0.137 REMARK 500 GLU A 117 CG GLU A 117 CD 0.114 REMARK 500 GLU A 117 CD GLU A 117 OE2 0.074 REMARK 500 PHE A 170 CD1 PHE A 170 CE1 0.133 REMARK 500 GLU A 199 CB GLU A 199 CG 0.127 REMARK 500 GLU A 199 CG GLU A 199 CD 0.127 REMARK 500 TYR A 235 CB TYR A 235 CG 0.110 REMARK 500 TYR A 235 CE1 TYR A 235 CZ 0.084 REMARK 500 GLU A 252 CB GLU A 252 CG 0.133 REMARK 500 GLU A 252 CG GLU A 252 CD 0.188 REMARK 500 VAL B 48 CB VAL B 48 CG2 0.130 REMARK 500 ALA B 101 CA ALA B 101 CB -0.129 REMARK 500 SER B 144 CB SER B 144 OG -0.085 REMARK 500 GLU B 192 CB GLU B 192 CG -0.167 REMARK 500 PHE B 226 CE2 PHE B 226 CD2 0.126 REMARK 500 GLU B 252 CG GLU B 252 CD 0.122 REMARK 500 VAL B 281 CB VAL B 281 CG1 -0.138 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 22 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP A 23 CB - CG - OD2 ANGL. DEV. = 7.8 DEGREES REMARK 500 ARG A 32 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 46 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ILE A 89 CG1 - CB - CG2 ANGL. DEV. = -17.5 DEGREES REMARK 500 SER A 113 CB - CA - C ANGL. DEV. = -11.5 DEGREES REMARK 500 ARG A 150 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 GLY A 184 N - CA - C ANGL. DEV. = -15.3 DEGREES REMARK 500 ASP A 203 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ASP A 207 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 GLY A 248 N - CA - C ANGL. DEV. = -15.8 DEGREES REMARK 500 LYS A 264 CD - CE - NZ ANGL. DEV. = 16.5 DEGREES REMARK 500 ARG A 283 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 32 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 LEU B 96 CB - CG - CD2 ANGL. DEV. = -12.1 DEGREES REMARK 500 PRO B 122 C - N - CA ANGL. DEV. = -9.9 DEGREES REMARK 500 ASP B 207 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 LEU B 211 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 PRO B 243 C - N - CA ANGL. DEV. = 10.5 DEGREES REMARK 500 ASP B 268 CB - CG - OD1 ANGL. DEV. = -5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 39 -53.40 -28.69 REMARK 500 ASN A 50 7.12 -150.61 REMARK 500 LYS A 64 -74.60 -115.54 REMARK 500 GLU A 98 63.86 39.53 REMARK 500 ASP A 151 46.62 -151.27 REMARK 500 ASP A 169 85.93 54.35 REMARK 500 MET A 197 -73.91 -56.15 REMARK 500 ASP A 198 174.71 -37.37 REMARK 500 ASP A 203 -176.66 -59.64 REMARK 500 ARG A 221 -10.49 74.91 REMARK 500 LEU A 225 -11.97 85.90 REMARK 500 PHE A 226 -18.18 -44.43 REMARK 500 ALA A 238 -90.39 -62.92 REMARK 500 GLN A 239 5.97 -52.40 REMARK 500 HIS A 249 -5.93 -58.37 REMARK 500 SER A 251 164.46 -36.64 REMARK 500 GLN A 263 116.01 -29.61 REMARK 500 GLU A 303 10.13 -62.64 REMARK 500 TYR A 309 53.93 -96.77 REMARK 500 MET A 312 2.08 -67.78 REMARK 500 LYS A 314 -48.58 -27.11 REMARK 500 SER B 38 -75.39 -52.73 REMARK 500 PHE B 39 -83.90 -15.57 REMARK 500 ARG B 49 -4.00 -58.24 REMARK 500 ASN B 50 7.12 -173.90 REMARK 500 TYR B 61 25.75 -149.56 REMARK 500 LYS B 64 -94.17 -32.34 REMARK 500 GLN B 65 55.18 -108.09 REMARK 500 ARG B 97 119.98 -163.23 REMARK 500 LYS B 120 -1.77 65.38 REMARK 500 SER B 144 -48.56 -28.15 REMARK 500 ARG B 150 0.43 82.93 REMARK 500 ASP B 151 46.73 -144.99 REMARK 500 ASP B 169 83.59 55.73 REMARK 500 MET B 197 171.13 38.57 REMARK 500 GLN B 201 145.34 -175.25 REMARK 500 ASP B 203 -157.05 -136.14 REMARK 500 ARG B 221 -23.70 62.99 REMARK 500 LEU B 225 33.76 -91.58 REMARK 500 SER B 251 156.93 -43.63 REMARK 500 LEU B 304 123.29 -1.25 REMARK 500 ASN B 306 80.58 67.51 REMARK 500 LYS B 314 -51.23 -8.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET A 197 ASP A 198 146.82 REMARK 500 ALA B 196 MET B 197 -146.46 REMARK 500 LYS B 313 LYS B 314 149.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE STU A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE STU B 500 DBREF 2GCD A 12 320 UNP Q9JLS3 TAOK2_RAT 12 320 DBREF 2GCD B 12 320 UNP Q9JLS3 TAOK2_RAT 12 320 SEQADV 2GCD SEP A 181 UNP Q9JLS3 SER 181 MODIFIED RESIDUE SEQADV 2GCD SEP B 181 UNP Q9JLS3 SER 181 MODIFIED RESIDUE SEQRES 1 A 309 ASP PRO ASP VAL ALA GLU LEU PHE PHE LYS ASP ASP PRO SEQRES 2 A 309 GLU LYS LEU PHE SER ASP LEU ARG GLU ILE GLY HIS GLY SEQRES 3 A 309 SER PHE GLY ALA VAL TYR PHE ALA ARG ASP VAL ARG ASN SEQRES 4 A 309 SER GLU VAL VAL ALA ILE LYS LYS MET SER TYR SER GLY SEQRES 5 A 309 LYS GLN SER ASN GLU LYS TRP GLN ASP ILE ILE LYS GLU SEQRES 6 A 309 VAL ARG PHE LEU GLN LYS LEU ARG HIS PRO ASN THR ILE SEQRES 7 A 309 GLN TYR ARG GLY CYS TYR LEU ARG GLU HIS THR ALA TRP SEQRES 8 A 309 LEU VAL MET GLU TYR CYS LEU GLY SER ALA SER ASP LEU SEQRES 9 A 309 LEU GLU VAL HIS LYS LYS PRO LEU GLN GLU VAL GLU ILE SEQRES 10 A 309 ALA ALA VAL THR HIS GLY ALA LEU GLN GLY LEU ALA TYR SEQRES 11 A 309 LEU HIS SER HIS ASN MET ILE HIS ARG ASP VAL LYS ALA SEQRES 12 A 309 GLY ASN ILE LEU LEU SER GLU PRO GLY LEU VAL LYS LEU SEQRES 13 A 309 GLY ASP PHE GLY SER ALA SER ILE MET ALA PRO ALA ASN SEQRES 14 A 309 SEP PHE VAL GLY THR PRO TYR TRP MET ALA PRO GLU VAL SEQRES 15 A 309 ILE LEU ALA MET ASP GLU GLY GLN TYR ASP GLY LYS VAL SEQRES 16 A 309 ASP VAL TRP SER LEU GLY ILE THR CYS ILE GLU LEU ALA SEQRES 17 A 309 GLU ARG LYS PRO PRO LEU PHE ASN MET ASN ALA MET SER SEQRES 18 A 309 ALA LEU TYR HIS ILE ALA GLN ASN GLU SER PRO ALA LEU SEQRES 19 A 309 GLN SER GLY HIS TRP SER GLU TYR PHE ARG ASN PHE VAL SEQRES 20 A 309 ASP SER CYS LEU GLN LYS ILE PRO GLN ASP ARG PRO THR SEQRES 21 A 309 SER GLU VAL LEU LEU LYS HIS ARG PHE VAL LEU ARG GLU SEQRES 22 A 309 ARG PRO PRO THR VAL ILE MET ASP LEU ILE GLN ARG THR SEQRES 23 A 309 LYS ASP ALA VAL ARG GLU LEU ASP ASN LEU GLN TYR ARG SEQRES 24 A 309 LYS MET LYS LYS ILE LEU PHE GLN GLU ALA SEQRES 1 B 309 ASP PRO ASP VAL ALA GLU LEU PHE PHE LYS ASP ASP PRO SEQRES 2 B 309 GLU LYS LEU PHE SER ASP LEU ARG GLU ILE GLY HIS GLY SEQRES 3 B 309 SER PHE GLY ALA VAL TYR PHE ALA ARG ASP VAL ARG ASN SEQRES 4 B 309 SER GLU VAL VAL ALA ILE LYS LYS MET SER TYR SER GLY SEQRES 5 B 309 LYS GLN SER ASN GLU LYS TRP GLN ASP ILE ILE LYS GLU SEQRES 6 B 309 VAL ARG PHE LEU GLN LYS LEU ARG HIS PRO ASN THR ILE SEQRES 7 B 309 GLN TYR ARG GLY CYS TYR LEU ARG GLU HIS THR ALA TRP SEQRES 8 B 309 LEU VAL MET GLU TYR CYS LEU GLY SER ALA SER ASP LEU SEQRES 9 B 309 LEU GLU VAL HIS LYS LYS PRO LEU GLN GLU VAL GLU ILE SEQRES 10 B 309 ALA ALA VAL THR HIS GLY ALA LEU GLN GLY LEU ALA TYR SEQRES 11 B 309 LEU HIS SER HIS ASN MET ILE HIS ARG ASP VAL LYS ALA SEQRES 12 B 309 GLY ASN ILE LEU LEU SER GLU PRO GLY LEU VAL LYS LEU SEQRES 13 B 309 GLY ASP PHE GLY SER ALA SER ILE MET ALA PRO ALA ASN SEQRES 14 B 309 SEP PHE VAL GLY THR PRO TYR TRP MET ALA PRO GLU VAL SEQRES 15 B 309 ILE LEU ALA MET ASP GLU GLY GLN TYR ASP GLY LYS VAL SEQRES 16 B 309 ASP VAL TRP SER LEU GLY ILE THR CYS ILE GLU LEU ALA SEQRES 17 B 309 GLU ARG LYS PRO PRO LEU PHE ASN MET ASN ALA MET SER SEQRES 18 B 309 ALA LEU TYR HIS ILE ALA GLN ASN GLU SER PRO ALA LEU SEQRES 19 B 309 GLN SER GLY HIS TRP SER GLU TYR PHE ARG ASN PHE VAL SEQRES 20 B 309 ASP SER CYS LEU GLN LYS ILE PRO GLN ASP ARG PRO THR SEQRES 21 B 309 SER GLU VAL LEU LEU LYS HIS ARG PHE VAL LEU ARG GLU SEQRES 22 B 309 ARG PRO PRO THR VAL ILE MET ASP LEU ILE GLN ARG THR SEQRES 23 B 309 LYS ASP ALA VAL ARG GLU LEU ASP ASN LEU GLN TYR ARG SEQRES 24 B 309 LYS MET LYS LYS ILE LEU PHE GLN GLU ALA MODRES 2GCD SEP A 181 SER PHOSPHOSERINE MODRES 2GCD SEP B 181 SER PHOSPHOSERINE HET SEP A 181 10 HET SEP B 181 10 HET STU A 400 35 HET STU B 500 35 HETNAM SEP PHOSPHOSERINE HETNAM STU STAUROSPORINE HETSYN SEP PHOSPHONOSERINE FORMUL 1 SEP 2(C3 H8 N O6 P) FORMUL 3 STU 2(C28 H26 N4 O3) FORMUL 5 HOH *277(H2 O) HELIX 1 1 ASP A 12 PHE A 19 1 8 HELIX 2 2 ASP A 23 LEU A 27 1 5 HELIX 3 3 GLN A 65 GLN A 81 1 17 HELIX 4 4 ALA A 112 LYS A 120 1 9 HELIX 5 5 GLN A 124 HIS A 145 1 22 HELIX 6 6 LYS A 153 GLY A 155 5 3 HELIX 7 7 THR A 185 MET A 189 5 5 HELIX 8 8 ALA A 190 ALA A 196 1 7 HELIX 9 9 GLY A 204 ARG A 221 1 18 HELIX 10 10 ASN A 229 ASN A 240 1 12 HELIX 11 11 SER A 251 GLN A 263 1 13 HELIX 12 12 ILE A 265 ARG A 269 5 5 HELIX 13 13 THR A 271 LEU A 276 1 6 HELIX 14 14 HIS A 278 ARG A 283 1 6 HELIX 15 15 THR A 288 GLU A 303 1 16 HELIX 16 16 ASN A 306 ALA A 320 5 15 HELIX 17 17 ASP B 12 PHE B 19 1 8 HELIX 18 18 ASP B 23 LEU B 27 1 5 HELIX 19 19 GLN B 65 LEU B 83 1 19 HELIX 20 20 ALA B 112 HIS B 119 1 8 HELIX 21 21 GLN B 124 HIS B 145 1 22 HELIX 22 22 LYS B 153 GLY B 155 5 3 HELIX 23 23 THR B 185 MET B 189 5 5 HELIX 24 24 ALA B 190 MET B 197 1 8 HELIX 25 25 GLY B 204 ARG B 221 1 18 HELIX 26 26 ASN B 229 ASN B 240 1 12 HELIX 27 27 SER B 251 LEU B 262 1 12 HELIX 28 28 ILE B 265 ARG B 269 5 5 HELIX 29 29 THR B 271 LEU B 276 1 6 HELIX 30 30 HIS B 278 ARG B 283 1 6 HELIX 31 31 THR B 288 LEU B 304 1 17 HELIX 32 32 ARG B 310 ALA B 320 5 11 SHEET 1 A 5 PHE A 28 HIS A 36 0 SHEET 2 A 5 ALA A 41 ASP A 47 -1 O VAL A 42 N ILE A 34 SHEET 3 A 5 VAL A 53 SER A 60 -1 O ILE A 56 N TYR A 43 SHEET 4 A 5 THR A 100 MET A 105 -1 O MET A 105 N ALA A 55 SHEET 5 A 5 TYR A 91 ARG A 97 -1 N ARG A 92 O VAL A 104 SHEET 1 B 3 GLY A 110 SER A 111 0 SHEET 2 B 3 ILE A 157 SER A 160 -1 O LEU A 159 N GLY A 110 SHEET 3 B 3 LEU A 164 LEU A 167 -1 O LEU A 164 N SER A 160 SHEET 1 C 5 PHE B 28 HIS B 36 0 SHEET 2 C 5 ALA B 41 ASP B 47 -1 O VAL B 42 N ILE B 34 SHEET 3 C 5 VAL B 53 SER B 60 -1 O VAL B 54 N ALA B 45 SHEET 4 C 5 THR B 100 GLU B 106 -1 O MET B 105 N ALA B 55 SHEET 5 C 5 TYR B 91 LEU B 96 -1 N TYR B 95 O TRP B 102 SHEET 1 D 3 GLY B 110 SER B 111 0 SHEET 2 D 3 ILE B 157 SER B 160 -1 O LEU B 159 N GLY B 110 SHEET 3 D 3 LEU B 164 LEU B 167 -1 O LYS B 166 N LEU B 158 LINK C ASN A 180 N SEP A 181 1555 1555 1.32 LINK C SEP A 181 N PHE A 182 1555 1555 1.35 LINK C ASN B 180 N SEP B 181 1555 1555 1.32 LINK C SEP B 181 N PHE B 182 1555 1555 1.32 CISPEP 1 GLU A 161 PRO A 162 0 25.68 CISPEP 2 ALA A 177 PRO A 178 0 -9.97 CISPEP 3 GLU B 161 PRO B 162 0 -4.23 CISPEP 4 ALA B 177 PRO B 178 0 -0.12 SITE 1 AC1 13 ILE A 34 GLY A 35 HIS A 36 ALA A 55 SITE 2 AC1 13 GLU A 106 TYR A 107 CYS A 108 LEU A 109 SITE 3 AC1 13 GLY A 110 SER A 111 GLY A 155 ASN A 156 SITE 4 AC1 13 ASP A 169 SITE 1 AC2 13 ILE B 34 GLY B 35 ALA B 55 LYS B 57 SITE 2 AC2 13 GLU B 106 TYR B 107 CYS B 108 LEU B 109 SITE 3 AC2 13 GLY B 110 GLY B 155 ASN B 156 ASP B 169 SITE 4 AC2 13 LYS B 314 CRYST1 186.019 186.019 94.641 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005380 0.003100 0.000000 0.00000 SCALE2 0.000000 0.006210 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010570 0.00000