HEADER TRANSFERASE 18-MAR-06 2GE9 TITLE SOLUTION STRUCTURES OF THE SH2 DOMAIN OF BRUTON'S TYROSINE KINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE BTK; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH2 DOMAIN; COMPND 5 SYNONYM: BRUTON'S TYROSINE KINASE, AGAMMAGLOBULINAEMIA TYROSINE COMPND 6 KINASE, ATK, B CELL PROGENITOR KINASE, BPK; COMPND 7 EC: 2.7.1.112; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BTK, AGMX1, ATK, BPK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS SH2 DOMAIN, BTK, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.-W.CHENG,K.-C.HUANG REVDAT 3 09-MAR-22 2GE9 1 REMARK SEQADV REVDAT 2 24-FEB-09 2GE9 1 VERSN REVDAT 1 24-OCT-06 2GE9 0 JRNL AUTH K.-C.HUANG,H.-T.CHENG,M.-T.PAI,S.-R.TZENG,J.-W.CHENG JRNL TITL SOLUTION STRUCTURE AND PHOSPHOPEPTIDE BINDING OF THE SH2 JRNL TITL 2 DOMAIN FROM THE HUMAN BRUTON'S TYROSINE KINASE JRNL REF J.BIOMOL.NMR V. 36 73 2006 JRNL REFN ISSN 0925-2738 JRNL PMID 16969585 JRNL DOI 10.1007/S10858-006-9064-3 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR, X-PLOR REMARK 3 AUTHORS : BRUNGER (X-PLOR), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GE9 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000037010. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5-2MM BTKSH2 U-15N; 0.5-2MM REMARK 210 BTKSH2 U-15N,13C REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING, TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 0 REMARK 465 HIS A 119 REMARK 465 HIS A 120 REMARK 465 HIS A 121 REMARK 465 HIS A 122 REMARK 465 HIS A 123 REMARK 465 HIS A 124 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H VAL A 48 O TYR A 65 1.38 REMARK 500 H CYS A 68 O TYR A 76 1.47 REMARK 500 O ALA A 52 H VAL A 61 1.57 REMARK 500 H GLY A 33 O PHE A 51 1.57 REMARK 500 OG SER A 49 HD1 HIS A 64 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 3 -161.07 -112.04 REMARK 500 1 GLU A 4 -33.43 -175.58 REMARK 500 1 SER A 6 -163.59 -161.30 REMARK 500 1 MET A 9 50.87 -170.84 REMARK 500 1 TYR A 10 -79.45 -50.16 REMARK 500 1 GLU A 11 -54.71 -149.33 REMARK 500 1 SER A 40 -148.96 -100.04 REMARK 500 1 SER A 41 -55.37 -150.28 REMARK 500 1 SER A 54 67.07 -160.25 REMARK 500 1 THR A 55 -145.55 -166.40 REMARK 500 1 ARG A 63 128.56 -174.41 REMARK 500 1 PRO A 71 6.55 -66.12 REMARK 500 1 TYR A 76 160.63 178.87 REMARK 500 1 GLU A 79 -17.54 -48.71 REMARK 500 1 PHE A 83 -162.74 -108.74 REMARK 500 1 GLN A 94 -75.21 -76.18 REMARK 500 1 ALA A 98 86.00 -64.78 REMARK 500 1 LEU A 100 -159.60 -111.15 REMARK 500 1 ILE A 101 18.26 -146.06 REMARK 500 1 SER A 102 138.90 -170.56 REMARK 500 1 LEU A 104 170.65 56.44 REMARK 500 1 LYS A 105 -78.66 -106.20 REMARK 500 1 PRO A 107 90.94 -65.64 REMARK 500 1 SER A 109 -161.42 -128.31 REMARK 500 1 GLN A 110 -36.85 -36.51 REMARK 500 1 GLN A 111 112.06 -160.44 REMARK 500 1 ASN A 112 63.18 -170.87 REMARK 500 1 ALA A 115 83.45 53.85 REMARK 500 1 SER A 117 94.07 52.30 REMARK 500 2 ALA A 3 -165.58 -171.51 REMARK 500 2 GLU A 4 61.06 -172.82 REMARK 500 2 ASP A 5 43.14 -95.76 REMARK 500 2 SER A 6 -169.96 -116.02 REMARK 500 2 ILE A 7 -81.07 -88.72 REMARK 500 2 GLU A 8 107.83 54.56 REMARK 500 2 MET A 9 39.26 -154.25 REMARK 500 2 TYR A 10 -76.77 -51.35 REMARK 500 2 GLU A 11 -45.79 -149.21 REMARK 500 2 SER A 40 -153.31 -109.98 REMARK 500 2 SER A 41 -53.36 -147.59 REMARK 500 2 LYS A 53 43.45 -109.82 REMARK 500 2 SER A 54 75.94 -162.72 REMARK 500 2 THR A 55 -145.28 -169.19 REMARK 500 2 ARG A 63 126.39 -171.10 REMARK 500 2 PRO A 71 1.61 -63.58 REMARK 500 2 TYR A 76 161.89 178.78 REMARK 500 2 GLU A 79 -17.78 -48.68 REMARK 500 2 PHE A 83 -154.74 -108.33 REMARK 500 2 GLN A 94 -71.72 -177.99 REMARK 500 2 ASN A 96 -158.93 -172.41 REMARK 500 REMARK 500 THIS ENTRY HAS 546 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 19 0.23 SIDE CHAIN REMARK 500 1 ARG A 38 0.29 SIDE CHAIN REMARK 500 1 ARG A 63 0.22 SIDE CHAIN REMARK 500 1 ARG A 103 0.21 SIDE CHAIN REMARK 500 2 ARG A 19 0.24 SIDE CHAIN REMARK 500 2 ARG A 38 0.26 SIDE CHAIN REMARK 500 2 ARG A 63 0.29 SIDE CHAIN REMARK 500 2 ARG A 103 0.32 SIDE CHAIN REMARK 500 3 ARG A 19 0.24 SIDE CHAIN REMARK 500 3 ARG A 38 0.29 SIDE CHAIN REMARK 500 3 ARG A 63 0.21 SIDE CHAIN REMARK 500 3 ARG A 103 0.24 SIDE CHAIN REMARK 500 4 ARG A 19 0.20 SIDE CHAIN REMARK 500 4 ARG A 38 0.31 SIDE CHAIN REMARK 500 4 ARG A 63 0.21 SIDE CHAIN REMARK 500 4 ARG A 103 0.30 SIDE CHAIN REMARK 500 5 ARG A 19 0.21 SIDE CHAIN REMARK 500 5 ARG A 38 0.26 SIDE CHAIN REMARK 500 5 ARG A 63 0.26 SIDE CHAIN REMARK 500 5 ARG A 103 0.31 SIDE CHAIN REMARK 500 6 ARG A 19 0.23 SIDE CHAIN REMARK 500 6 ARG A 38 0.29 SIDE CHAIN REMARK 500 6 ARG A 63 0.30 SIDE CHAIN REMARK 500 6 ARG A 103 0.31 SIDE CHAIN REMARK 500 7 ARG A 19 0.23 SIDE CHAIN REMARK 500 7 ARG A 38 0.31 SIDE CHAIN REMARK 500 7 ARG A 63 0.21 SIDE CHAIN REMARK 500 7 ARG A 103 0.28 SIDE CHAIN REMARK 500 8 ARG A 19 0.31 SIDE CHAIN REMARK 500 8 ARG A 38 0.30 SIDE CHAIN REMARK 500 8 ARG A 63 0.26 SIDE CHAIN REMARK 500 8 ARG A 103 0.32 SIDE CHAIN REMARK 500 9 ARG A 19 0.24 SIDE CHAIN REMARK 500 9 ARG A 38 0.21 SIDE CHAIN REMARK 500 9 ARG A 63 0.22 SIDE CHAIN REMARK 500 9 ARG A 103 0.27 SIDE CHAIN REMARK 500 10 ARG A 19 0.23 SIDE CHAIN REMARK 500 10 ARG A 38 0.26 SIDE CHAIN REMARK 500 10 ARG A 63 0.30 SIDE CHAIN REMARK 500 10 ARG A 103 0.32 SIDE CHAIN REMARK 500 11 ARG A 19 0.25 SIDE CHAIN REMARK 500 11 ARG A 38 0.24 SIDE CHAIN REMARK 500 11 ARG A 63 0.32 SIDE CHAIN REMARK 500 11 ARG A 103 0.27 SIDE CHAIN REMARK 500 12 ARG A 19 0.26 SIDE CHAIN REMARK 500 12 ARG A 38 0.21 SIDE CHAIN REMARK 500 12 ARG A 63 0.31 SIDE CHAIN REMARK 500 12 ARG A 103 0.20 SIDE CHAIN REMARK 500 13 ARG A 19 0.26 SIDE CHAIN REMARK 500 13 ARG A 38 0.22 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 80 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2GE9 A 1 118 UNP Q06187 BTK_HUMAN 269 386 SEQADV 2GE9 MET A 0 UNP Q06187 INITIATING METHIONINE SEQADV 2GE9 HIS A 119 UNP Q06187 EXPRESSION TAG SEQADV 2GE9 HIS A 120 UNP Q06187 EXPRESSION TAG SEQADV 2GE9 HIS A 121 UNP Q06187 EXPRESSION TAG SEQADV 2GE9 HIS A 122 UNP Q06187 EXPRESSION TAG SEQADV 2GE9 HIS A 123 UNP Q06187 EXPRESSION TAG SEQADV 2GE9 HIS A 124 UNP Q06187 EXPRESSION TAG SEQRES 1 A 125 MET THR GLU ALA GLU ASP SER ILE GLU MET TYR GLU TRP SEQRES 2 A 125 TYR SER LYS HIS MET THR ARG SER GLN ALA GLU GLN LEU SEQRES 3 A 125 LEU LYS GLN GLU GLY LYS GLU GLY GLY PHE ILE VAL ARG SEQRES 4 A 125 ASP SER SER LYS ALA GLY LYS TYR THR VAL SER VAL PHE SEQRES 5 A 125 ALA LYS SER THR GLY ASP PRO GLN GLY VAL ILE ARG HIS SEQRES 6 A 125 TYR VAL VAL CYS SER THR PRO GLN SER GLN TYR TYR LEU SEQRES 7 A 125 ALA GLU LYS HIS LEU PHE SER THR ILE PRO GLU LEU ILE SEQRES 8 A 125 ASN TYR HIS GLN HIS ASN SER ALA GLY LEU ILE SER ARG SEQRES 9 A 125 LEU LYS TYR PRO VAL SER GLN GLN ASN LYS ASN ALA PRO SEQRES 10 A 125 SER THR HIS HIS HIS HIS HIS HIS HELIX 1 1 THR A 18 GLY A 30 1 13 HELIX 2 2 THR A 85 HIS A 95 1 11 SHEET 1 A 4 VAL A 61 VAL A 66 0 SHEET 2 A 4 TYR A 46 ALA A 52 -1 N VAL A 48 O TYR A 65 SHEET 3 A 4 GLY A 34 ASP A 39 -1 N ILE A 36 O SER A 49 SHEET 4 A 4 TYR A 106 PRO A 107 1 O TYR A 106 N PHE A 35 SHEET 1 B 3 CYS A 68 THR A 70 0 SHEET 2 B 3 GLN A 74 ALA A 78 -1 O TYR A 76 N CYS A 68 SHEET 3 B 3 HIS A 81 PHE A 83 -1 O PHE A 83 N TYR A 75 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1