HEADER OXIDOREDUCTASE 21-MAR-06 2GF3 TITLE STRUCTURE OF THE COMPLEX OF MONOMERIC SARCOSINE WITH ITS SUBSTRATE TITLE 2 ANALOGUE INHIBITOR 2-FUROIC ACID AT 1.3 A RESOLUTION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: MONOMERIC SARCOSINE OXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MSOX; COMPND 5 EC: 1.5.3.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SP.; SOURCE 3 ORGANISM_TAXID: 1409; SOURCE 4 GENE: SOXA, SOX; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: DH1; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: B-0618 KEYWDS FLAVOPROTEIN OXIDASE, INHIBITOR 2-FUROIC ACID, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.CHEN,P.TRICKEY,M.S.JORNS,F.S.MATHEWS REVDAT 5 30-AUG-23 2GF3 1 REMARK LINK REVDAT 4 28-MAR-12 2GF3 1 TITLE REVDAT 3 13-JUL-11 2GF3 1 VERSN REVDAT 2 24-FEB-09 2GF3 1 VERSN REVDAT 1 06-FEB-07 2GF3 0 JRNL AUTH Z.CHEN,P.TRICKEY,M.S.JORNS,F.S.MATHEWS JRNL TITL STRUCTURE OF THE COMPLEX OF MONOMERIC SARCOSINE WITH ITS JRNL TITL 2 SUBSTRATE ANALOGUE INHIBITOR 2-FUROIC ACID AT 1.3 A JRNL TITL 3 RESOLUTION. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.TRICKEY,M.A.WAGNER,M.S.JORNS,F.S.MATHEWS REMARK 1 TITL MONOMERIC SARCOSINE OXIDASE: STRUCTURE OF A COVALENTLY REMARK 1 TITL 2 FLAVINYLATED AMINE OXIDIZING ENZYME REMARK 1 REF STRUCTURE V. 7 331 1999 REMARK 1 REFN ISSN 0969-2126 REMARK 1 PMID 10368302 REMARK 1 DOI 10.1016/S0969-2126(99)80043-4 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1532946.360 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 165773 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 16587 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.002 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.38 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 22466 REMARK 3 BIN R VALUE (WORKING SET) : 0.2122 REMARK 3 BIN FREE R VALUE : 0.2219 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 2527 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6016 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 167 REMARK 3 SOLVENT ATOMS : 992 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.89000 REMARK 3 B22 (A**2) : 0.28000 REMARK 3 B33 (A**2) : 2.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.19000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.12 REMARK 3 ESD FROM SIGMAA (A) : 0.08 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.14 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.08 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.150 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GF3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000037038. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 170534 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 82.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.23700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1L9F REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8-2.1M SODIUM/POTASSIUM PHOSPHATE, REMARK 280 PH 6.7, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.72000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 386 REMARK 465 THR A 387 REMARK 465 THR A 388 REMARK 465 ILE A 389 REMARK 465 LYS B 386 REMARK 465 THR B 387 REMARK 465 THR B 388 REMARK 465 ILE B 389 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 GOL B 404 O HOH B 600 2.02 REMARK 500 O HOH A 496 O HOH B 872 2.02 REMARK 500 O HOH A 639 O HOH B 870 2.02 REMARK 500 O HOH A 496 O HOH B 870 2.11 REMARK 500 NE2 HIS A 368 O HOH A 896 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O2 GOL B 404 O HOH A 462 1655 2.09 REMARK 500 O GLU A 78 O2 GOL B 404 1455 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 315 CA - CB - SG ANGL. DEV. = 8.5 DEGREES REMARK 500 CYS B 315 CA - CB - SG ANGL. DEV. = 8.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 11 53.52 -101.79 REMARK 500 PHE A 35 -149.23 -130.28 REMARK 500 ASP A 47 -48.21 72.49 REMARK 500 ASP A 47 -55.36 73.92 REMARK 500 HIS A 345 28.58 -144.66 REMARK 500 LYS A 381 40.27 74.53 REMARK 500 ALA B 11 55.70 -102.71 REMARK 500 PHE B 35 -147.87 -127.56 REMARK 500 ASP B 47 -51.75 72.88 REMARK 500 ASP B 47 -42.36 64.35 REMARK 500 HIS B 345 27.71 -145.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FOA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FOA B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FOA B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FOA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1L9F RELATED DB: PDB REMARK 900 MONOMERIC SARCOSINE OXIDASE: STRUCTURE OF A COVALENTLY FLAVINYLATED REMARK 900 AMINE OXIDIZING ENZYME DBREF 2GF3 A 1 389 UNP P40859 MSOX_BACB0 2 390 DBREF 2GF3 B 1 389 UNP P40859 MSOX_BACB0 2 390 SEQRES 1 A 389 SER THR HIS PHE ASP VAL ILE VAL VAL GLY ALA GLY SER SEQRES 2 A 389 MET GLY MET ALA ALA GLY TYR GLN LEU ALA LYS GLN GLY SEQRES 3 A 389 VAL LYS THR LEU LEU VAL ASP ALA PHE ASP PRO PRO HIS SEQRES 4 A 389 THR ASN GLY SER HIS HIS GLY ASP THR ARG ILE ILE ARG SEQRES 5 A 389 HIS ALA TYR GLY GLU GLY ARG GLU TYR VAL PRO LEU ALA SEQRES 6 A 389 LEU ARG SER GLN GLU LEU TRP TYR GLU LEU GLU LYS GLU SEQRES 7 A 389 THR HIS HIS LYS ILE PHE THR LYS THR GLY VAL LEU VAL SEQRES 8 A 389 PHE GLY PRO LYS GLY GLU SER ALA PHE VAL ALA GLU THR SEQRES 9 A 389 MET GLU ALA ALA LYS GLU HIS SER LEU THR VAL ASP LEU SEQRES 10 A 389 LEU GLU GLY ASP GLU ILE ASN LYS ARG TRP PRO GLY ILE SEQRES 11 A 389 THR VAL PRO GLU ASN TYR ASN ALA ILE PHE GLU PRO ASN SEQRES 12 A 389 SER GLY VAL LEU PHE SER GLU ASN CYS ILE ARG ALA TYR SEQRES 13 A 389 ARG GLU LEU ALA GLU ALA ARG GLY ALA LYS VAL LEU THR SEQRES 14 A 389 HIS THR ARG VAL GLU ASP PHE ASP ILE SER PRO ASP SER SEQRES 15 A 389 VAL LYS ILE GLU THR ALA ASN GLY SER TYR THR ALA ASP SEQRES 16 A 389 LYS LEU ILE VAL SER MET GLY ALA TRP ASN SER LYS LEU SEQRES 17 A 389 LEU SER LYS LEU ASN LEU ASP ILE PRO LEU GLN PRO TYR SEQRES 18 A 389 ARG GLN VAL VAL GLY PHE PHE GLU SER ASP GLU SER LYS SEQRES 19 A 389 TYR SER ASN ASP ILE ASP PHE PRO GLY PHE MET VAL GLU SEQRES 20 A 389 VAL PRO ASN GLY ILE TYR TYR GLY PHE PRO SER PHE GLY SEQRES 21 A 389 GLY CYS GLY LEU LYS LEU GLY TYR HIS THR PHE GLY GLN SEQRES 22 A 389 LYS ILE ASP PRO ASP THR ILE ASN ARG GLU PHE GLY VAL SEQRES 23 A 389 TYR PRO GLU ASP GLU SER ASN LEU ARG ALA PHE LEU GLU SEQRES 24 A 389 GLU TYR MET PRO GLY ALA ASN GLY GLU LEU LYS ARG GLY SEQRES 25 A 389 ALA VAL CYS MET TYR THR LYS THR LEU ASP GLU HIS PHE SEQRES 26 A 389 ILE ILE ASP LEU HIS PRO GLU HIS SER ASN VAL VAL ILE SEQRES 27 A 389 ALA ALA GLY PHE SER GLY HIS GLY PHE LYS PHE SER SER SEQRES 28 A 389 GLY VAL GLY GLU VAL LEU SER GLN LEU ALA LEU THR GLY SEQRES 29 A 389 LYS THR GLU HIS ASP ILE SER ILE PHE SER ILE ASN ARG SEQRES 30 A 389 PRO ALA LEU LYS GLU SER LEU GLN LYS THR THR ILE SEQRES 1 B 389 SER THR HIS PHE ASP VAL ILE VAL VAL GLY ALA GLY SER SEQRES 2 B 389 MET GLY MET ALA ALA GLY TYR GLN LEU ALA LYS GLN GLY SEQRES 3 B 389 VAL LYS THR LEU LEU VAL ASP ALA PHE ASP PRO PRO HIS SEQRES 4 B 389 THR ASN GLY SER HIS HIS GLY ASP THR ARG ILE ILE ARG SEQRES 5 B 389 HIS ALA TYR GLY GLU GLY ARG GLU TYR VAL PRO LEU ALA SEQRES 6 B 389 LEU ARG SER GLN GLU LEU TRP TYR GLU LEU GLU LYS GLU SEQRES 7 B 389 THR HIS HIS LYS ILE PHE THR LYS THR GLY VAL LEU VAL SEQRES 8 B 389 PHE GLY PRO LYS GLY GLU SER ALA PHE VAL ALA GLU THR SEQRES 9 B 389 MET GLU ALA ALA LYS GLU HIS SER LEU THR VAL ASP LEU SEQRES 10 B 389 LEU GLU GLY ASP GLU ILE ASN LYS ARG TRP PRO GLY ILE SEQRES 11 B 389 THR VAL PRO GLU ASN TYR ASN ALA ILE PHE GLU PRO ASN SEQRES 12 B 389 SER GLY VAL LEU PHE SER GLU ASN CYS ILE ARG ALA TYR SEQRES 13 B 389 ARG GLU LEU ALA GLU ALA ARG GLY ALA LYS VAL LEU THR SEQRES 14 B 389 HIS THR ARG VAL GLU ASP PHE ASP ILE SER PRO ASP SER SEQRES 15 B 389 VAL LYS ILE GLU THR ALA ASN GLY SER TYR THR ALA ASP SEQRES 16 B 389 LYS LEU ILE VAL SER MET GLY ALA TRP ASN SER LYS LEU SEQRES 17 B 389 LEU SER LYS LEU ASN LEU ASP ILE PRO LEU GLN PRO TYR SEQRES 18 B 389 ARG GLN VAL VAL GLY PHE PHE GLU SER ASP GLU SER LYS SEQRES 19 B 389 TYR SER ASN ASP ILE ASP PHE PRO GLY PHE MET VAL GLU SEQRES 20 B 389 VAL PRO ASN GLY ILE TYR TYR GLY PHE PRO SER PHE GLY SEQRES 21 B 389 GLY CYS GLY LEU LYS LEU GLY TYR HIS THR PHE GLY GLN SEQRES 22 B 389 LYS ILE ASP PRO ASP THR ILE ASN ARG GLU PHE GLY VAL SEQRES 23 B 389 TYR PRO GLU ASP GLU SER ASN LEU ARG ALA PHE LEU GLU SEQRES 24 B 389 GLU TYR MET PRO GLY ALA ASN GLY GLU LEU LYS ARG GLY SEQRES 25 B 389 ALA VAL CYS MET TYR THR LYS THR LEU ASP GLU HIS PHE SEQRES 26 B 389 ILE ILE ASP LEU HIS PRO GLU HIS SER ASN VAL VAL ILE SEQRES 27 B 389 ALA ALA GLY PHE SER GLY HIS GLY PHE LYS PHE SER SER SEQRES 28 B 389 GLY VAL GLY GLU VAL LEU SER GLN LEU ALA LEU THR GLY SEQRES 29 B 389 LYS THR GLU HIS ASP ILE SER ILE PHE SER ILE ASN ARG SEQRES 30 B 389 PRO ALA LEU LYS GLU SER LEU GLN LYS THR THR ILE HET CL A 403 1 HET PO4 A 405 5 HET FAD A 400 53 HET FOA A 401 8 HET FOA A 402 8 HET GOL A 404 6 HET CL B 403 1 HET PO4 B 405 5 HET PO4 B 406 5 HET FOA B 402 8 HET FAD B 400 53 HET FOA B 401 8 HET GOL B 404 6 HETNAM CL CHLORIDE ION HETNAM PO4 PHOSPHATE ION HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM FOA 2-FUROIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CL 2(CL 1-) FORMUL 4 PO4 3(O4 P 3-) FORMUL 5 FAD 2(C27 H33 N9 O15 P2) FORMUL 6 FOA 4(C5 H4 O3) FORMUL 8 GOL 2(C3 H8 O3) FORMUL 16 HOH *992(H2 O) HELIX 1 1 GLY A 12 GLN A 25 1 14 HELIX 2 2 GLY A 58 GLU A 60 5 3 HELIX 3 3 TYR A 61 THR A 79 1 19 HELIX 4 4 SER A 98 HIS A 111 1 14 HELIX 5 5 GLY A 120 TRP A 127 1 8 HELIX 6 6 SER A 149 ARG A 163 1 15 HELIX 7 7 MET A 201 ALA A 203 5 3 HELIX 8 8 TRP A 204 LEU A 209 1 6 HELIX 9 9 SER A 210 LEU A 212 5 3 HELIX 10 10 ASP A 231 SER A 236 1 6 HELIX 11 11 ASN A 237 ASP A 240 5 4 HELIX 12 12 PRO A 288 MET A 302 1 15 HELIX 13 13 PRO A 303 ASN A 306 5 4 HELIX 14 14 GLY A 346 LYS A 348 5 3 HELIX 15 15 PHE A 349 GLY A 364 1 16 HELIX 16 16 ILE A 370 SER A 374 5 5 HELIX 17 17 ARG A 377 LYS A 381 5 5 HELIX 18 18 GLY B 12 LYS B 24 1 13 HELIX 19 19 GLY B 58 GLU B 60 5 3 HELIX 20 20 TYR B 61 THR B 79 1 19 HELIX 21 21 SER B 98 HIS B 111 1 14 HELIX 22 22 GLY B 120 TRP B 127 1 8 HELIX 23 23 SER B 149 ARG B 163 1 15 HELIX 24 24 MET B 201 ALA B 203 5 3 HELIX 25 25 TRP B 204 LEU B 209 1 6 HELIX 26 26 SER B 210 LEU B 212 5 3 HELIX 27 27 ASP B 231 SER B 236 1 6 HELIX 28 28 ASN B 237 ASP B 240 5 4 HELIX 29 29 PRO B 288 MET B 302 1 15 HELIX 30 30 PRO B 303 ASN B 306 5 4 HELIX 31 31 GLY B 346 LYS B 348 5 3 HELIX 32 32 PHE B 349 GLY B 364 1 16 HELIX 33 33 ILE B 370 SER B 374 5 5 HELIX 34 34 ARG B 377 LYS B 381 5 5 SHEET 1 A 6 LYS A 166 LEU A 168 0 SHEET 2 A 6 THR A 29 VAL A 32 1 N LEU A 31 O LYS A 166 SHEET 3 A 6 PHE A 4 VAL A 9 1 N VAL A 8 O LEU A 30 SHEET 4 A 6 GLY A 190 VAL A 199 1 O ILE A 198 N VAL A 9 SHEET 5 A 6 VAL A 183 THR A 187 -1 N VAL A 183 O ALA A 194 SHEET 6 A 6 VAL A 173 ILE A 178 -1 N GLU A 174 O GLU A 186 SHEET 1 B 6 LYS A 166 LEU A 168 0 SHEET 2 B 6 THR A 29 VAL A 32 1 N LEU A 31 O LYS A 166 SHEET 3 B 6 PHE A 4 VAL A 9 1 N VAL A 8 O LEU A 30 SHEET 4 B 6 GLY A 190 VAL A 199 1 O ILE A 198 N VAL A 9 SHEET 5 B 6 HIS A 333 ALA A 340 1 O VAL A 337 N LEU A 197 SHEET 6 B 6 ILE A 326 HIS A 330 -1 N ASP A 328 O ILE A 338 SHEET 1 C 3 THR A 48 ILE A 51 0 SHEET 2 C 3 GLY A 145 PHE A 148 -1 O LEU A 147 N ARG A 49 SHEET 3 C 3 PHE A 84 THR A 85 -1 N THR A 85 O VAL A 146 SHEET 1 D 8 ASP A 116 GLU A 119 0 SHEET 2 D 8 TYR A 136 GLU A 141 -1 O PHE A 140 N ASP A 116 SHEET 3 D 8 VAL A 89 PRO A 94 -1 N VAL A 89 O GLU A 141 SHEET 4 D 8 GLY A 243 VAL A 248 1 O GLY A 243 N LEU A 90 SHEET 5 D 8 GLY A 251 PHE A 256 -1 O GLY A 251 N VAL A 248 SHEET 6 D 8 LEU A 264 TYR A 268 -1 O GLY A 267 N TYR A 254 SHEET 7 D 8 GLN A 219 PHE A 228 -1 N PHE A 228 O LEU A 264 SHEET 8 D 8 GLN A 273 LYS A 274 -1 O GLN A 273 N ARG A 222 SHEET 1 E 8 ASP A 116 GLU A 119 0 SHEET 2 E 8 TYR A 136 GLU A 141 -1 O PHE A 140 N ASP A 116 SHEET 3 E 8 VAL A 89 PRO A 94 -1 N VAL A 89 O GLU A 141 SHEET 4 E 8 GLY A 243 VAL A 248 1 O GLY A 243 N LEU A 90 SHEET 5 E 8 GLY A 251 PHE A 256 -1 O GLY A 251 N VAL A 248 SHEET 6 E 8 LEU A 264 TYR A 268 -1 O GLY A 267 N TYR A 254 SHEET 7 E 8 GLN A 219 PHE A 228 -1 N PHE A 228 O LEU A 264 SHEET 8 E 8 LEU A 309 LYS A 319 -1 O LYS A 310 N PHE A 227 SHEET 1 F 2 LEU A 214 ASP A 215 0 SHEET 2 F 2 SER A 383 LEU A 384 -1 O SER A 383 N ASP A 215 SHEET 1 G 6 LYS B 166 LEU B 168 0 SHEET 2 G 6 THR B 29 VAL B 32 1 N LEU B 31 O LEU B 168 SHEET 3 G 6 THR B 2 VAL B 9 1 N VAL B 8 O LEU B 30 SHEET 4 G 6 GLY B 190 VAL B 199 1 O ILE B 198 N VAL B 9 SHEET 5 G 6 SER B 182 THR B 187 -1 N ILE B 185 O TYR B 192 SHEET 6 G 6 PHE B 176 SER B 179 -1 N SER B 179 O SER B 182 SHEET 1 H 6 LYS B 166 LEU B 168 0 SHEET 2 H 6 THR B 29 VAL B 32 1 N LEU B 31 O LEU B 168 SHEET 3 H 6 THR B 2 VAL B 9 1 N VAL B 8 O LEU B 30 SHEET 4 H 6 GLY B 190 VAL B 199 1 O ILE B 198 N VAL B 9 SHEET 5 H 6 HIS B 333 ALA B 340 1 O VAL B 337 N VAL B 199 SHEET 6 H 6 ILE B 326 HIS B 330 -1 N ASP B 328 O ILE B 338 SHEET 1 I 3 THR B 48 ILE B 51 0 SHEET 2 I 3 GLY B 145 PHE B 148 -1 O LEU B 147 N ARG B 49 SHEET 3 I 3 PHE B 84 THR B 85 -1 N THR B 85 O VAL B 146 SHEET 1 J 8 ASP B 116 GLU B 119 0 SHEET 2 J 8 TYR B 136 GLU B 141 -1 O PHE B 140 N ASP B 116 SHEET 3 J 8 VAL B 89 PRO B 94 -1 N VAL B 89 O GLU B 141 SHEET 4 J 8 GLY B 243 VAL B 248 1 O GLY B 243 N LEU B 90 SHEET 5 J 8 GLY B 251 PHE B 256 -1 O GLY B 251 N VAL B 248 SHEET 6 J 8 LEU B 264 TYR B 268 -1 O GLY B 267 N TYR B 254 SHEET 7 J 8 GLN B 219 PHE B 228 -1 N PHE B 228 O LEU B 264 SHEET 8 J 8 GLN B 273 LYS B 274 -1 O GLN B 273 N ARG B 222 SHEET 1 K 8 ASP B 116 GLU B 119 0 SHEET 2 K 8 TYR B 136 GLU B 141 -1 O PHE B 140 N ASP B 116 SHEET 3 K 8 VAL B 89 PRO B 94 -1 N VAL B 89 O GLU B 141 SHEET 4 K 8 GLY B 243 VAL B 248 1 O GLY B 243 N LEU B 90 SHEET 5 K 8 GLY B 251 PHE B 256 -1 O GLY B 251 N VAL B 248 SHEET 6 K 8 LEU B 264 TYR B 268 -1 O GLY B 267 N TYR B 254 SHEET 7 K 8 GLN B 219 PHE B 228 -1 N PHE B 228 O LEU B 264 SHEET 8 K 8 LEU B 309 LYS B 319 -1 O LYS B 310 N PHE B 227 SHEET 1 L 2 LEU B 214 ASP B 215 0 SHEET 2 L 2 SER B 383 LEU B 384 -1 O SER B 383 N ASP B 215 LINK SG CYS A 315 C8M FAD A 400 1555 1555 1.82 LINK SG CYS B 315 C8M FAD B 400 1555 1555 1.78 CISPEP 1 PRO A 37 PRO A 38 0 0.21 CISPEP 2 PRO B 37 PRO B 38 0 -0.13 SITE 1 AC1 6 TYR A 317 THR A 318 SER A 343 GLY A 344 SITE 2 AC1 6 FAD A 400 HOH A 502 SITE 1 AC2 5 HIS A 81 ASN A 151 ARG A 154 HOH A 464 SITE 2 AC2 5 HOH A 853 SITE 1 AC3 7 TYR B 317 THR B 318 PHE B 342 SER B 343 SITE 2 AC3 7 GLY B 344 FAD B 400 HOH B 486 SITE 1 AC4 9 HIS B 53 LEU B 113 THR B 114 GLU B 141 SITE 2 AC4 9 PRO B 142 ASN B 143 SER B 144 HOH B 464 SITE 3 AC4 9 HOH B 713 SITE 1 AC5 5 HIS B 81 ASN B 151 ARG B 154 HOH B 427 SITE 2 AC5 5 HOH B 717 SITE 1 AC6 39 GLY A 10 GLY A 12 SER A 13 MET A 14 SITE 2 AC6 39 VAL A 32 ASP A 33 ALA A 34 PHE A 35 SITE 3 AC6 39 HIS A 39 GLY A 42 SER A 43 HIS A 44 SITE 4 AC6 39 ARG A 49 ILE A 50 ARG A 172 VAL A 173 SITE 5 AC6 39 SER A 200 MET A 201 GLY A 202 TRP A 204 SITE 6 AC6 39 LEU A 208 TYR A 254 CYS A 315 MET A 316 SITE 7 AC6 39 TYR A 317 PHE A 342 GLY A 344 HIS A 345 SITE 8 AC6 39 GLY A 346 PHE A 347 LYS A 348 FOA A 401 SITE 9 AC6 39 CL A 403 HOH A 408 HOH A 411 HOH A 424 SITE 10 AC6 39 HOH A 434 HOH A 476 HOH A 825 SITE 1 AC7 8 ILE A 50 ARG A 52 TYR A 254 GLY A 344 SITE 2 AC7 8 HIS A 345 LYS A 348 FAD A 400 HOH A 825 SITE 1 AC8 9 PRO B 217 GLN B 219 TYR B 221 LYS B 319 SITE 2 AC8 9 THR B 320 LEU B 321 HOH B 439 HOH B 747 SITE 3 AC8 9 HOH B 850 SITE 1 AC9 39 GLY B 10 GLY B 12 SER B 13 MET B 14 SITE 2 AC9 39 VAL B 32 ASP B 33 ALA B 34 PHE B 35 SITE 3 AC9 39 HIS B 39 GLY B 42 SER B 43 HIS B 44 SITE 4 AC9 39 ARG B 49 ILE B 50 THR B 171 ARG B 172 SITE 5 AC9 39 VAL B 173 SER B 200 MET B 201 GLY B 202 SITE 6 AC9 39 TRP B 204 LEU B 208 TYR B 254 CYS B 315 SITE 7 AC9 39 MET B 316 TYR B 317 PHE B 342 GLY B 344 SITE 8 AC9 39 HIS B 345 GLY B 346 PHE B 347 LYS B 348 SITE 9 AC9 39 FOA B 401 CL B 403 HOH B 410 HOH B 412 SITE 10 AC9 39 HOH B 422 HOH B 425 HOH B 433 SITE 1 BC1 7 ILE B 50 ARG B 52 TYR B 254 GLY B 344 SITE 2 BC1 7 HIS B 345 LYS B 348 FAD B 400 SITE 1 BC2 8 PRO A 217 GLN A 219 TYR A 221 LYS A 319 SITE 2 BC2 8 THR A 320 HOH A 437 HOH A 746 HOH A 884 SITE 1 BC3 10 GLU A 78 LEU A 159 HOH A 462 LYS B 86 SITE 2 BC3 10 ASN B 237 ASP B 240 HOH B 456 HOH B 485 SITE 3 BC3 10 HOH B 600 HOH B 612 SITE 1 BC4 10 ASN A 237 ASP A 240 HOH A 468 HOH A 469 SITE 2 BC4 10 HOH A 572 HOH A 795 GLU B 78 LEU B 159 SITE 3 BC4 10 HOH B 579 HOH B 597 CRYST1 72.727 69.440 73.671 90.00 94.16 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013750 0.000000 0.000999 0.00000 SCALE2 0.000000 0.014401 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013610 0.00000