HEADER HYDROLASE 21-MAR-06 2GFH TITLE CRYSTAL STRUCTURE OF A N-ACETYLNEURAMINIC ACID PHOSPHATASE (NANP) FROM TITLE 2 MUS MUSCULUS AT 1.90 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HALOACID DEHALOGENASE-LIKE HYDROLASE DOMAIN CONTAINING 4; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: 17391249; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 03-APR-24 2GFH 1 REMARK REVDAT 5 25-JAN-23 2GFH 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 2GFH 1 VERSN REVDAT 3 23-MAR-11 2GFH 1 TITLE KEYWDS REVDAT 2 24-FEB-09 2GFH 1 VERSN REVDAT 1 18-APR-06 2GFH 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PROTEIN C20ORF147 HOMOLOG (17391249) JRNL TITL 2 FROM MUS MUSCULUS AT 1.90 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 23709 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1209 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1532 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1882 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 108 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.53000 REMARK 3 B22 (A**2) : 0.53000 REMARK 3 B33 (A**2) : -0.79000 REMARK 3 B12 (A**2) : 0.26000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.151 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.151 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.105 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.019 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1931 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1780 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2613 ; 1.513 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4127 ; 0.794 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 248 ; 5.536 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 81 ;39.797 ;24.198 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 342 ;13.312 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;13.850 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 304 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2138 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 372 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 435 ; 0.224 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1797 ; 0.171 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 953 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1205 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 107 ; 0.163 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.112 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 6 ; 0.061 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 43 ; 0.255 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.176 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1226 ; 1.946 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 504 ; 0.581 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1969 ; 3.093 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 723 ; 5.042 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 642 ; 7.043 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 18 REMARK 3 RESIDUE RANGE : A 109 A 247 REMARK 3 ORIGIN FOR THE GROUP (A): 6.2050 21.2220 11.8520 REMARK 3 T TENSOR REMARK 3 T11: -0.1375 T22: -0.1115 REMARK 3 T33: -0.2368 T12: 0.0347 REMARK 3 T13: 0.0839 T23: 0.0272 REMARK 3 L TENSOR REMARK 3 L11: 2.3989 L22: 2.5462 REMARK 3 L33: 3.1544 L12: -0.5049 REMARK 3 L13: 0.5054 L23: -0.3751 REMARK 3 S TENSOR REMARK 3 S11: 0.1476 S12: -0.1091 S13: 0.0969 REMARK 3 S21: 0.0414 S22: 0.0560 S23: 0.1134 REMARK 3 S31: -0.0496 S32: -0.2443 S33: -0.2036 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 19 A 108 REMARK 3 ORIGIN FOR THE GROUP (A): -6.0600 29.7250 -14.2210 REMARK 3 T TENSOR REMARK 3 T11: -0.0271 T22: 0.0108 REMARK 3 T33: -0.0845 T12: 0.0872 REMARK 3 T13: -0.0255 T23: 0.0440 REMARK 3 L TENSOR REMARK 3 L11: 2.8710 L22: 3.9727 REMARK 3 L33: 4.9017 L12: -1.2023 REMARK 3 L13: 0.9534 L23: -1.4669 REMARK 3 S TENSOR REMARK 3 S11: 0.0632 S12: 0.2413 S13: 0.1186 REMARK 3 S21: -0.6069 S22: -0.1244 S23: -0.0383 REMARK 3 S31: 0.1565 S32: 0.2451 S33: 0.0613 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. NA, CL, PO4, AND EDO MODELED BASED ON REMARK 3 CRYSTALIIZATION CONDITIONS AND RELATED STRUCTURES. 3. BASED ON REMARK 3 HOMOLOGOUS STRUCTURES, NA COULD ALSO BE MODELED AS MG. 4. THERE REMARK 3 IS UNMODELED DENSITY NEAR LYS91 AND LYS243. 5. RESIDUES 63-66 REMARK 3 ARE DISORDERED AND WERE NOT MODELED. 6. ATOM RECORD CONTAINS REMARK 3 RESIDUAL B FACTORS ONLY. REMARK 4 REMARK 4 2GFH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000037051. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-AUG-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL, CYLINDRICALLY REMARK 200 BENT, ASYMMETRICALLY CUT SI(220) REMARK 200 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24076 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.47000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.340 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1X42A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8M (NH4)H2PO3, 0.1M TRIS, PH 9.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.21067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 130.42133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 97.81600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 163.02667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 32.60533 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.21067 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 130.42133 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 163.02667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 97.81600 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 32.60533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 SIZE EXCLUSION CHROMATOGRAPHY DATA SUPPORTS THE REMARK 300 ASSIGNMENT OF A MONOMER AS THE BIOLOGICALLY SIGNIFICANT REMARK 300 OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 32.60533 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 PRO A 63 REMARK 465 TYR A 64 REMARK 465 SER A 65 REMARK 465 THR A 66 REMARK 465 VAL A 248 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -2 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A -1 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 38 CG CD CE NZ REMARK 470 LYS A 42 CG CD CE NZ REMARK 470 GLU A 43 CG CD OE1 OE2 REMARK 470 GLU A 44 CG CD OE1 OE2 REMARK 470 LYS A 58 CG CD CE NZ REMARK 470 LYS A 84 CD CE NZ REMARK 470 ASP A 88 OD1 OD2 REMARK 470 LYS A 123 CD CE NZ REMARK 470 LYS A 161 CD CE NZ REMARK 470 LYS A 211 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 192 CG GLU A 192 CD 0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 104 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 104 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 13 -60.16 -95.48 REMARK 500 THR A 16 -58.27 -120.54 REMARK 500 LYS A 42 -129.49 -111.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 249 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 12 OD2 REMARK 620 2 ASP A 14 O 94.9 REMARK 620 3 ASP A 189 OD1 75.8 92.7 REMARK 620 4 PO4 A 251 O3 73.4 93.3 149.0 REMARK 620 5 HOH A 312 O 154.1 110.1 108.9 97.5 REMARK 620 6 HOH A 350 O 59.5 152.7 89.8 71.7 94.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 249 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 251 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 252 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 354784 RELATED DB: TARGETDB DBREF 2GFH A 1 248 UNP Q9CPT3 HDHD4_MOUSE 1 248 SEQADV 2GFH MET A -11 UNP Q9CPT3 EXPRESSION TAG SEQADV 2GFH GLY A -10 UNP Q9CPT3 EXPRESSION TAG SEQADV 2GFH SER A -9 UNP Q9CPT3 EXPRESSION TAG SEQADV 2GFH ASP A -8 UNP Q9CPT3 EXPRESSION TAG SEQADV 2GFH LYS A -7 UNP Q9CPT3 EXPRESSION TAG SEQADV 2GFH ILE A -6 UNP Q9CPT3 EXPRESSION TAG SEQADV 2GFH HIS A -5 UNP Q9CPT3 EXPRESSION TAG SEQADV 2GFH HIS A -4 UNP Q9CPT3 EXPRESSION TAG SEQADV 2GFH HIS A -3 UNP Q9CPT3 EXPRESSION TAG SEQADV 2GFH HIS A -2 UNP Q9CPT3 EXPRESSION TAG SEQADV 2GFH HIS A -1 UNP Q9CPT3 EXPRESSION TAG SEQADV 2GFH HIS A 0 UNP Q9CPT3 EXPRESSION TAG SEQRES 1 A 260 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 A 260 GLY LEU SER ARG VAL ARG ALA VAL PHE PHE ASP LEU ASP SEQRES 3 A 260 ASN THR LEU ILE ASP THR ALA GLY ALA SER ARG ARG GLY SEQRES 4 A 260 MET LEU GLU VAL ILE LYS LEU LEU GLN SER LYS TYR HIS SEQRES 5 A 260 TYR LYS GLU GLU ALA GLU ILE ILE CYS ASP LYS VAL GLN SEQRES 6 A 260 VAL LYS LEU SER LYS GLU CYS PHE HIS PRO TYR SER THR SEQRES 7 A 260 CYS ILE THR ASP VAL ARG THR SER HIS TRP GLU GLU ALA SEQRES 8 A 260 ILE GLN GLU THR LYS GLY GLY ALA ASP ASN ARG LYS LEU SEQRES 9 A 260 ALA GLU GLU CYS TYR PHE LEU TRP LYS SER THR ARG LEU SEQRES 10 A 260 GLN HIS MET ILE LEU ALA ASP ASP VAL LYS ALA MET LEU SEQRES 11 A 260 THR GLU LEU ARG LYS GLU VAL ARG LEU LEU LEU LEU THR SEQRES 12 A 260 ASN GLY ASP ARG GLN THR GLN ARG GLU LYS ILE GLU ALA SEQRES 13 A 260 CYS ALA CYS GLN SER TYR PHE ASP ALA ILE VAL ILE GLY SEQRES 14 A 260 GLY GLU GLN LYS GLU GLU LYS PRO ALA PRO SER ILE PHE SEQRES 15 A 260 TYR HIS CYS CYS ASP LEU LEU GLY VAL GLN PRO GLY ASP SEQRES 16 A 260 CYS VAL MET VAL GLY ASP THR LEU GLU THR ASP ILE GLN SEQRES 17 A 260 GLY GLY LEU ASN ALA GLY LEU LYS ALA THR VAL TRP ILE SEQRES 18 A 260 ASN LYS SER GLY ARG VAL PRO LEU THR SER SER PRO MET SEQRES 19 A 260 PRO HIS TYR MET VAL SER SER VAL LEU GLU LEU PRO ALA SEQRES 20 A 260 LEU LEU GLN SER ILE ASP CYS LYS VAL SER MET SER VAL HET NA A 249 1 HET CL A 250 1 HET PO4 A 251 5 HET EDO A 252 4 HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETNAM PO4 PHOSPHATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NA NA 1+ FORMUL 3 CL CL 1- FORMUL 4 PO4 O4 P 3- FORMUL 5 EDO C2 H6 O2 FORMUL 6 HOH *108(H2 O) HELIX 1 1 ASP A 19 LYS A 38 1 20 HELIX 2 2 GLU A 43 LYS A 58 1 16 HELIX 3 3 CYS A 67 GLY A 85 1 19 HELIX 4 4 ASN A 89 HIS A 107 1 19 HELIX 5 5 ALA A 111 LYS A 123 1 13 HELIX 6 6 ASP A 134 ALA A 146 1 13 HELIX 7 7 CYS A 147 PHE A 151 5 5 HELIX 8 8 GLY A 158 GLN A 160 5 3 HELIX 9 9 ALA A 166 GLY A 178 1 13 HELIX 10 10 GLN A 180 GLY A 182 5 3 HELIX 11 11 THR A 193 ALA A 201 1 9 HELIX 12 12 SER A 229 LEU A 231 5 3 HELIX 13 13 GLU A 232 ASP A 241 1 10 SHEET 1 A 2 MET A 1 GLY A 2 0 SHEET 2 A 2 SER A 245 MET A 246 -1 O SER A 245 N GLY A 2 SHEET 1 B 6 ALA A 153 ILE A 156 0 SHEET 2 B 6 ARG A 126 THR A 131 1 N LEU A 129 O VAL A 155 SHEET 3 B 6 ALA A 8 PHE A 11 1 N VAL A 9 O ARG A 126 SHEET 4 B 6 CYS A 184 GLY A 188 1 O VAL A 185 N PHE A 10 SHEET 5 B 6 ALA A 205 ILE A 209 1 O VAL A 207 N MET A 186 SHEET 6 B 6 TYR A 225 VAL A 227 1 O TYR A 225 N TRP A 208 LINK OD2 ASP A 12 NA NA A 249 1555 1555 2.78 LINK O ASP A 14 NA NA A 249 1555 1555 2.51 LINK OD1 ASP A 189 NA NA A 249 1555 1555 2.25 LINK NA NA A 249 O3 PO4 A 251 1555 1555 2.30 LINK NA NA A 249 O HOH A 312 1555 1555 2.32 LINK NA NA A 249 O HOH A 350 1555 1555 2.34 CISPEP 1 LYS A 164 PRO A 165 0 12.67 SITE 1 AC1 6 ASP A 12 ASP A 14 ASP A 189 PO4 A 251 SITE 2 AC1 6 HOH A 312 HOH A 350 SITE 1 AC2 3 ARG A 72 ARG A 104 LYS A 141 SITE 1 AC3 9 ASP A 12 LEU A 13 ASP A 14 THR A 131 SITE 2 AC3 9 ASN A 132 LYS A 164 NA A 249 HOH A 288 SITE 3 AC3 9 HOH A 350 SITE 1 AC4 5 ASN A 15 THR A 16 LEU A 17 ILE A 18 SITE 2 AC4 5 HOH A 347 CRYST1 71.259 71.259 195.632 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014033 0.008102 0.000000 0.00000 SCALE2 0.000000 0.016204 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005112 0.00000