HEADER HYDROLASE 22-MAR-06 2GFI TITLE CRYSTAL STRUCTURE OF THE PHYTASE FROM D. CASTELLII AT 2.3 A COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHYTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.3.8; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEBARYOMYCES CASTELLII; SOURCE 3 ORGANISM_TAXID: 27295; SOURCE 4 STRAIN: CBS 2923; SOURCE 5 EXPRESSION_SYSTEM: DEBARYOMYCES CASTELLII; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 27295 KEYWDS 3-PHYTASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR F.HOH REVDAT 6 30-AUG-23 2GFI 1 HETSYN REVDAT 5 29-JUL-20 2GFI 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE REVDAT 4 13-JUL-11 2GFI 1 VERSN REVDAT 3 28-APR-09 2GFI 1 JRNL REVDAT 2 24-FEB-09 2GFI 1 VERSN REVDAT 1 27-MAR-07 2GFI 0 JRNL AUTH M.RAGON,F.HOH,A.AUMELAS,L.CHICHE,G.MOULIN,H.BOZE JRNL TITL STRUCTURE OF DEBARYOMYCES CASTELLII CBS 2923 PHYTASE. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 65 321 2009 JRNL REFN ESSN 1744-3091 JRNL PMID 19342770 JRNL DOI 10.1107/S1744309109008653 REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 62778 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3186 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.29 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.35 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3600 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.1610 REMARK 3 BIN FREE R VALUE SET COUNT : 179 REMARK 3 BIN FREE R VALUE : 0.2390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7192 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 624 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : 0.07000 REMARK 3 B33 (A**2) : -0.11000 REMARK 3 B12 (A**2) : 0.04000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.181 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.112 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.935 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7444 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10135 ; 1.512 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 914 ; 6.258 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 378 ;37.153 ;25.344 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1144 ;13.537 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;14.912 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1102 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5812 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 4422 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5359 ; 0.320 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 873 ; 0.219 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 146 ; 0.209 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 46 ; 0.211 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4613 ; 1.040 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7347 ; 1.754 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3179 ; 2.987 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2785 ; 3.919 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 7792 ; 2.551 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 628 ; 6.595 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 7265 ; 2.661 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2GFI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000037052. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62779 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.290 REMARK 200 RESOLUTION RANGE LOW (A) : 65.541 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : 0.11000 REMARK 200 FOR THE DATA SET : 5.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.21900 REMARK 200 R SYM FOR SHELL (I) : 0.21900 REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1QFX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.02M CACL2 15% MPD, PH 4.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 221.49667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 110.74833 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 166.12250 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 55.37417 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 276.87083 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 221.49667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 110.74833 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 55.37417 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 166.12250 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 276.87083 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER GENERATED FROM THE REMARK 300 DIMER BY THE OPERATION: -Y, -X, 1/6-Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 22350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 60260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 60.82750 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 105.35632 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 55.37417 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 6 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 942 O HOH B 1223 1.55 REMARK 500 O HOH B 1065 O HOH B 1222 1.74 REMARK 500 C SER A 461 O HOH A 1080 2.00 REMARK 500 O HOH B 1208 O HOH B 1221 2.09 REMARK 500 O HOH A 866 O HOH A 1102 2.15 REMARK 500 O SER A 461 O HOH A 1080 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 1181 O HOH B 1181 10665 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 148 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 148 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 170 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 170 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ASP A 253 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP A 338 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 131 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG B 148 CG - CD - NE ANGL. DEV. = -13.0 DEGREES REMARK 500 ARG B 148 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ASP B 276 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP B 294 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 14 48.96 -90.90 REMARK 500 ASP A 109 53.89 -92.26 REMARK 500 GLU A 122 -8.10 80.62 REMARK 500 ALA A 271 143.56 -172.32 REMARK 500 SER A 299 -156.39 -133.08 REMARK 500 ASP A 323 -39.27 -35.49 REMARK 500 THR A 334 -160.91 -160.10 REMARK 500 SER A 406 25.22 -142.99 REMARK 500 ASN A 439 -161.29 -75.16 REMARK 500 THR A 455 35.55 -140.74 REMARK 500 LEU B 14 48.39 -92.29 REMARK 500 ASP B 109 48.35 -94.19 REMARK 500 GLU B 122 -7.83 77.02 REMARK 500 SER B 299 -154.15 -129.27 REMARK 500 THR B 334 -159.80 -162.31 REMARK 500 SER B 406 27.48 -143.26 REMARK 500 ASN B 439 -161.76 -75.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 NO DATABASE REFERENCE WAS AVAILABLE AT THE TIME REMARK 999 OF PROCESSING. DBREF 2GFI A 4 461 UNP A2TBB4 A2TBB4_9SACH 4 461 DBREF 2GFI B 4 461 UNP A2TBB4 A2TBB4_9SACH 4 461 SEQRES 1 A 458 VAL SER LYS LEU ILE ASN ASN GLY LEU LEU LEU VAL GLY SEQRES 2 A 458 GLN GLY ALA TYR GLN ASP LEU ALA SER PRO GLN GLN ALA SEQRES 3 A 458 SER VAL GLU GLN TYR ASN ILE ILE ARG PHE LEU GLY GLY SEQRES 4 A 458 ALA ALA PRO TYR ILE GLN ASN LYS GLY PHE GLY ILE SER SEQRES 5 A 458 THR ASP ILE PRO ASP GLN CYS THR LEU GLU GLN VAL GLN SEQRES 6 A 458 LEU PHE SER ARG HIS GLY GLU ARG TYR PRO SER THR GLY SEQRES 7 A 458 SER GLY LYS LYS TYR LYS ALA VAL TYR GLU LYS LEU MET SEQRES 8 A 458 SER TYR ASN GLY THR PHE LYS GLY GLU LEU ALA PHE LEU SEQRES 9 A 458 ASN ASP ASP TYR GLU TYR PHE VAL PRO ASP SER VAL TYR SEQRES 10 A 458 LEU GLU LYS GLU THR SER PRO LYS ASN SER ASP SER ILE SEQRES 11 A 458 TYR ALA GLY THR THR ASP ALA MET LYS HIS GLY ILE ALA SEQRES 12 A 458 PHE ARG THR LYS TYR GLY GLU LEU PHE ASP THR ASN ASP SEQRES 13 A 458 THR LEU PRO VAL PHE THR SER ASN SER GLY ARG VAL TYR SEQRES 14 A 458 GLN THR SER GLN TYR PHE ALA ARG GLY PHE MET GLY ASP SEQRES 15 A 458 ASP PHE SER ASN ASP THR VAL LYS THR ASN ILE ILE SER SEQRES 16 A 458 GLU ASP ALA ASP MET GLY ALA ASN SER LEU THR PRO ARG SEQRES 17 A 458 ASP GLY CYS PHE ASN TYR ASN GLU ASN ALA ASN THR ALA SEQRES 18 A 458 ILE VAL ASP GLU TYR THR THR GLU TYR LEU THR LYS ALA SEQRES 19 A 458 LEU ASN ARG PHE LYS ALA SER ASN PRO GLY LEU ASN ILE SEQRES 20 A 458 THR GLU ASP ASP VAL SER ASN LEU PHE GLY TYR CYS ALA SEQRES 21 A 458 TYR GLU LEU ASN VAL LYS GLY ALA SER PRO MET CYS ASP SEQRES 22 A 458 ILE PHE THR ASN GLU GLU PHE ILE GLN TYR SER TYR SER SEQRES 23 A 458 VAL ASP LEU ASP ASP TYR TYR SER ASN SER ALA GLY ASN SEQRES 24 A 458 ASN MET THR ARG VAL ILE GLY SER THR LEU LEU ASN ALA SEQRES 25 A 458 SER LEU GLU LEU LEU ASN HIS ASP LYS ASN GLU ASN LYS SEQRES 26 A 458 ILE TRP LEU SER PHE THR HIS ASP THR ASP ILE GLU ILE SEQRES 27 A 458 PHE HIS SER ALA ILE GLY ILE LEU ILE PRO ASP GLU ASP SEQRES 28 A 458 LEU PRO VAL ASP TYR THR PRO PHE PRO SER PRO TYR SER SEQRES 29 A 458 HIS VAL GLY ILE THR PRO GLN GLY ALA ARG THR ILE ILE SEQRES 30 A 458 GLU LYS TYR ALA CYS GLY ASN GLU SER TYR VAL ARG TYR SEQRES 31 A 458 VAL ILE ASN ASP ALA VAL ILE PRO ILE LYS LYS CYS SER SEQRES 32 A 458 SER GLY PRO GLY PHE SER CYS ASN LEU ASN ASP TYR ASN SEQRES 33 A 458 ASP TYR VAL ALA GLU ARG VAL ALA GLY THR ASN TYR VAL SEQRES 34 A 458 GLU GLN CYS GLY ASN ASN ASN ALA SER ALA VAL THR PHE SEQRES 35 A 458 TYR TRP ASP TYR GLU THR THR ASN TYR THR ALA SER LEU SEQRES 36 A 458 ILE ASN SER SEQRES 1 B 458 VAL SER LYS LEU ILE ASN ASN GLY LEU LEU LEU VAL GLY SEQRES 2 B 458 GLN GLY ALA TYR GLN ASP LEU ALA SER PRO GLN GLN ALA SEQRES 3 B 458 SER VAL GLU GLN TYR ASN ILE ILE ARG PHE LEU GLY GLY SEQRES 4 B 458 ALA ALA PRO TYR ILE GLN ASN LYS GLY PHE GLY ILE SER SEQRES 5 B 458 THR ASP ILE PRO ASP GLN CYS THR LEU GLU GLN VAL GLN SEQRES 6 B 458 LEU PHE SER ARG HIS GLY GLU ARG TYR PRO SER THR GLY SEQRES 7 B 458 SER GLY LYS LYS TYR LYS ALA VAL TYR GLU LYS LEU MET SEQRES 8 B 458 SER TYR ASN GLY THR PHE LYS GLY GLU LEU ALA PHE LEU SEQRES 9 B 458 ASN ASP ASP TYR GLU TYR PHE VAL PRO ASP SER VAL TYR SEQRES 10 B 458 LEU GLU LYS GLU THR SER PRO LYS ASN SER ASP SER ILE SEQRES 11 B 458 TYR ALA GLY THR THR ASP ALA MET LYS HIS GLY ILE ALA SEQRES 12 B 458 PHE ARG THR LYS TYR GLY GLU LEU PHE ASP THR ASN ASP SEQRES 13 B 458 THR LEU PRO VAL PHE THR SER ASN SER GLY ARG VAL TYR SEQRES 14 B 458 GLN THR SER GLN TYR PHE ALA ARG GLY PHE MET GLY ASP SEQRES 15 B 458 ASP PHE SER ASN ASP THR VAL LYS THR ASN ILE ILE SER SEQRES 16 B 458 GLU ASP ALA ASP MET GLY ALA ASN SER LEU THR PRO ARG SEQRES 17 B 458 ASP GLY CYS PHE ASN TYR ASN GLU ASN ALA ASN THR ALA SEQRES 18 B 458 ILE VAL ASP GLU TYR THR THR GLU TYR LEU THR LYS ALA SEQRES 19 B 458 LEU ASN ARG PHE LYS ALA SER ASN PRO GLY LEU ASN ILE SEQRES 20 B 458 THR GLU ASP ASP VAL SER ASN LEU PHE GLY TYR CYS ALA SEQRES 21 B 458 TYR GLU LEU ASN VAL LYS GLY ALA SER PRO MET CYS ASP SEQRES 22 B 458 ILE PHE THR ASN GLU GLU PHE ILE GLN TYR SER TYR SER SEQRES 23 B 458 VAL ASP LEU ASP ASP TYR TYR SER ASN SER ALA GLY ASN SEQRES 24 B 458 ASN MET THR ARG VAL ILE GLY SER THR LEU LEU ASN ALA SEQRES 25 B 458 SER LEU GLU LEU LEU ASN HIS ASP LYS ASN GLU ASN LYS SEQRES 26 B 458 ILE TRP LEU SER PHE THR HIS ASP THR ASP ILE GLU ILE SEQRES 27 B 458 PHE HIS SER ALA ILE GLY ILE LEU ILE PRO ASP GLU ASP SEQRES 28 B 458 LEU PRO VAL ASP TYR THR PRO PHE PRO SER PRO TYR SER SEQRES 29 B 458 HIS VAL GLY ILE THR PRO GLN GLY ALA ARG THR ILE ILE SEQRES 30 B 458 GLU LYS TYR ALA CYS GLY ASN GLU SER TYR VAL ARG TYR SEQRES 31 B 458 VAL ILE ASN ASP ALA VAL ILE PRO ILE LYS LYS CYS SER SEQRES 32 B 458 SER GLY PRO GLY PHE SER CYS ASN LEU ASN ASP TYR ASN SEQRES 33 B 458 ASP TYR VAL ALA GLU ARG VAL ALA GLY THR ASN TYR VAL SEQRES 34 B 458 GLU GLN CYS GLY ASN ASN ASN ALA SER ALA VAL THR PHE SEQRES 35 B 458 TYR TRP ASP TYR GLU THR THR ASN TYR THR ALA SER LEU SEQRES 36 B 458 ILE ASN SER MODRES 2GFI ASN A 314 ASN GLYCOSYLATION SITE MODRES 2GFI ASN A 439 ASN GLYCOSYLATION SITE MODRES 2GFI ASN B 158 ASN GLYCOSYLATION SITE MODRES 2GFI ASN B 314 ASN GLYCOSYLATION SITE MODRES 2GFI ASN B 439 ASN GLYCOSYLATION SITE HET NAG A 800 14 HET NAG A 801 14 HET NAG B 900 14 HET NAG B 901 14 HET NAG B 902 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 5(C8 H15 N O6) FORMUL 8 HOH *624(H2 O) HELIX 1 1 GLY A 16 GLN A 21 5 6 HELIX 2 2 SER A 25 ALA A 29 5 5 HELIX 3 3 VAL A 31 LEU A 40 5 10 HELIX 4 4 SER A 79 SER A 95 1 17 HELIX 5 5 LYS A 101 ASP A 109 5 9 HELIX 6 6 ASP A 117 LEU A 121 5 5 HELIX 7 7 ALA A 135 GLY A 152 1 18 HELIX 8 8 GLU A 153 PHE A 155 5 3 HELIX 9 9 SER A 168 GLY A 184 1 17 HELIX 10 10 ASP A 185 PHE A 187 5 3 HELIX 11 11 ASP A 200 GLY A 204 5 5 HELIX 12 12 THR A 209 CYS A 214 5 6 HELIX 13 13 ASN A 222 ASP A 227 1 6 HELIX 14 14 THR A 231 ASN A 245 1 15 HELIX 15 15 THR A 251 GLY A 270 1 20 HELIX 16 16 SER A 272 PHE A 278 5 7 HELIX 17 17 THR A 279 SER A 299 1 21 HELIX 18 18 MET A 304 HIS A 322 1 19 HELIX 19 19 HIS A 335 GLY A 347 1 13 HELIX 20 20 SER A 367 THR A 372 1 6 HELIX 21 21 GLY A 408 SER A 412 5 5 HELIX 22 22 LEU A 415 ALA A 427 1 13 HELIX 23 23 ASN A 430 GLY A 436 1 7 HELIX 24 24 THR A 444 TYR A 449 1 6 HELIX 25 25 GLY B 16 GLN B 21 5 6 HELIX 26 26 SER B 25 ALA B 29 5 5 HELIX 27 27 VAL B 31 LEU B 40 5 10 HELIX 28 28 SER B 79 SER B 95 1 17 HELIX 29 29 LYS B 101 ASP B 109 5 9 HELIX 30 30 ASP B 117 LEU B 121 5 5 HELIX 31 31 ALA B 135 GLY B 152 1 18 HELIX 32 32 GLU B 153 PHE B 155 5 3 HELIX 33 33 SER B 168 GLY B 184 1 17 HELIX 34 34 ASP B 185 PHE B 187 5 3 HELIX 35 35 ASP B 200 GLY B 204 5 5 HELIX 36 36 THR B 209 CYS B 214 5 6 HELIX 37 37 ASN B 222 GLU B 228 1 7 HELIX 38 38 THR B 231 ASN B 245 1 15 HELIX 39 39 THR B 251 GLY B 270 1 20 HELIX 40 40 SER B 272 PHE B 278 5 7 HELIX 41 41 THR B 279 SER B 299 1 21 HELIX 42 42 MET B 304 HIS B 322 1 19 HELIX 43 43 HIS B 335 GLY B 347 1 13 HELIX 44 44 SER B 367 THR B 372 1 6 HELIX 45 45 LEU B 415 ALA B 427 1 13 HELIX 46 46 ASN B 430 GLY B 436 1 7 HELIX 47 47 THR B 444 TYR B 449 1 6 SHEET 1 A 7 VAL A 192 ILE A 197 0 SHEET 2 A 7 LEU A 161 SER A 166 1 N VAL A 163 O ASN A 195 SHEET 3 A 7 ILE A 329 THR A 334 1 O LEU A 331 N PHE A 164 SHEET 4 A 7 CYS A 62 ARG A 72 1 N SER A 71 O SER A 332 SHEET 5 A 7 ARG A 377 CYS A 385 -1 O ALA A 384 N THR A 63 SHEET 6 A 7 GLU A 388 ILE A 395 -1 O TYR A 390 N TYR A 383 SHEET 7 A 7 ALA A 398 ILE A 400 -1 O ILE A 400 N TYR A 393 SHEET 1 B 7 VAL A 192 ILE A 197 0 SHEET 2 B 7 LEU A 161 SER A 166 1 N VAL A 163 O ASN A 195 SHEET 3 B 7 ILE A 329 THR A 334 1 O LEU A 331 N PHE A 164 SHEET 4 B 7 CYS A 62 ARG A 72 1 N SER A 71 O SER A 332 SHEET 5 B 7 ARG A 377 CYS A 385 -1 O ALA A 384 N THR A 63 SHEET 6 B 7 GLU A 388 ILE A 395 -1 O TYR A 390 N TYR A 383 SHEET 7 B 7 CYS A 413 ASN A 414 -1 O CYS A 413 N VAL A 391 SHEET 1 C 7 VAL B 192 ILE B 197 0 SHEET 2 C 7 LEU B 161 SER B 166 1 N VAL B 163 O ASN B 195 SHEET 3 C 7 ILE B 329 THR B 334 1 O LEU B 331 N PHE B 164 SHEET 4 C 7 CYS B 62 ARG B 72 1 N LEU B 69 O TRP B 330 SHEET 5 C 7 ARG B 377 CYS B 385 -1 O LYS B 382 N GLU B 65 SHEET 6 C 7 GLU B 388 ILE B 395 -1 O TYR B 390 N TYR B 383 SHEET 7 C 7 ALA B 398 ILE B 400 -1 O ALA B 398 N ILE B 395 SHEET 1 D 7 VAL B 192 ILE B 197 0 SHEET 2 D 7 LEU B 161 SER B 166 1 N VAL B 163 O ASN B 195 SHEET 3 D 7 ILE B 329 THR B 334 1 O LEU B 331 N PHE B 164 SHEET 4 D 7 CYS B 62 ARG B 72 1 N LEU B 69 O TRP B 330 SHEET 5 D 7 ARG B 377 CYS B 385 -1 O LYS B 382 N GLU B 65 SHEET 6 D 7 GLU B 388 ILE B 395 -1 O TYR B 390 N TYR B 383 SHEET 7 D 7 CYS B 413 ASN B 414 -1 O CYS B 413 N VAL B 391 SSBOND 1 CYS A 214 CYS A 435 1555 1555 2.68 SSBOND 2 CYS A 262 CYS A 275 1555 1555 2.07 SSBOND 3 CYS A 405 CYS A 413 1555 1555 2.00 SSBOND 4 CYS B 62 CYS B 385 1555 1555 2.11 SSBOND 5 CYS B 214 CYS B 435 1555 1555 2.10 SSBOND 6 CYS B 262 CYS B 275 1555 1555 2.06 SSBOND 7 CYS B 405 CYS B 413 1555 1555 2.01 LINK ND2 ASN A 314 C1 NAG A 800 1555 1555 1.45 LINK ND2 ASN A 439 C1 NAG A 801 1555 1555 1.45 LINK ND2 ASN B 158 C1 NAG B 902 1555 1555 1.45 LINK ND2 ASN B 314 C1 NAG B 900 1555 1555 1.44 LINK ND2 ASN B 439 C1 NAG B 901 1555 1555 1.45 CISPEP 1 PHE A 362 PRO A 363 0 -0.65 CISPEP 2 PHE B 362 PRO B 363 0 -0.64 CRYST1 121.655 121.655 332.245 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008220 0.004746 0.000000 0.00000 SCALE2 0.000000 0.009492 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003010 0.00000