HEADER VIRAL PROTEIN 27-MAR-06 2GHV TITLE CRYSTAL STRUCTURE OF SARS SPIKE PROTEIN RECEPTOR BINDING DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPIKE GLYCOPROTEIN; COMPND 3 CHAIN: E, C; COMPND 4 FRAGMENT: RBD OF SPIKE PROTEIN S1 (318-510); COMPND 5 SYNONYM: PEPLOMER PROTEIN, E2, RBD; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SARS CORONAVIRUS; SOURCE 3 ORGANISM_TAXID: 227859; SOURCE 4 GENE: S; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PACGP67A KEYWDS SARS, S PROTEIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR W.C.HWANG,Y.LIN,E.SANTELLI,J.SUI,L.JAROSZEWSKI,B.STEC,M.FARZAN, AUTHOR 2 W.A.MARASCO,R.C.LIDDINGTON REVDAT 3 13-JUL-11 2GHV 1 VERSN REVDAT 2 24-FEB-09 2GHV 1 VERSN REVDAT 1 19-SEP-06 2GHV 0 JRNL AUTH W.C.HWANG,Y.LIN,E.SANTELLI,J.SUI,L.JAROSZEWSKI,B.STEC, JRNL AUTH 2 M.FARZAN,W.A.MARASCO,R.C.LIDDINGTON JRNL TITL STRUCTURAL BASIS OF NEUTRALIZATION BY A HUMAN ANTI-SEVERE JRNL TITL 2 ACUTE RESPIRATORY SYNDROME SPIKE PROTEIN ANTIBODY, 80R. JRNL REF J.BIOL.CHEM. V. 281 34610 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16954221 JRNL DOI 10.1074/JBC.M603275200 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 35893 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1790 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2477 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 118 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2944 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 152 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.37000 REMARK 3 B22 (A**2) : 1.37000 REMARK 3 B33 (A**2) : -2.75000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.154 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.144 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.112 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.696 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3044 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2576 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4156 ; 1.489 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5998 ; 0.849 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 364 ; 7.364 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 148 ;31.208 ;23.378 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 442 ;15.008 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;17.840 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 432 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3434 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 696 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 497 ; 0.205 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2571 ; 0.186 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1506 ; 0.190 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1749 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 112 ; 0.148 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 34 ; 0.171 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 42 ; 0.247 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.315 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2290 ; 2.327 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 736 ; 0.703 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2974 ; 2.965 ; 2.500 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1531 ; 3.652 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1182 ; 4.608 ; 4.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 320 E 502 REMARK 3 ORIGIN FOR THE GROUP (A): 6.8657 -21.5108 30.8302 REMARK 3 T TENSOR REMARK 3 T11: -0.3639 T22: -0.0302 REMARK 3 T33: -0.2254 T12: 0.0383 REMARK 3 T13: -0.0312 T23: -0.0169 REMARK 3 L TENSOR REMARK 3 L11: 3.3651 L22: 2.0500 REMARK 3 L33: 4.8756 L12: 0.0725 REMARK 3 L13: -0.7231 L23: -1.0041 REMARK 3 S TENSOR REMARK 3 S11: 0.0498 S12: -0.4355 S13: 0.0380 REMARK 3 S21: 0.0694 S22: -0.1121 S23: -0.0097 REMARK 3 S31: -0.0502 S32: -0.0474 S33: 0.0623 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 320 C 502 REMARK 3 ORIGIN FOR THE GROUP (A): 4.7603 -22.4617 -1.8440 REMARK 3 T TENSOR REMARK 3 T11: -0.0405 T22: -0.1283 REMARK 3 T33: -0.2098 T12: 0.1408 REMARK 3 T13: -0.0429 T23: 0.0645 REMARK 3 L TENSOR REMARK 3 L11: 3.1896 L22: 3.3711 REMARK 3 L33: 7.2822 L12: 0.9918 REMARK 3 L13: 2.3999 L23: 3.1380 REMARK 3 S TENSOR REMARK 3 S11: -0.0803 S12: 0.1946 S13: 0.1717 REMARK 3 S21: -0.8070 S22: -0.0192 S23: 0.0899 REMARK 3 S31: -0.5306 S32: 0.2525 S33: 0.0995 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2GHV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-APR-06. REMARK 100 THE RCSB ID CODE IS RCSB037137. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-SEP-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.099999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : BLU-ICE REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36036 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -4.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09800 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.73900 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4% PEG4000, 0.1M SODIUM ACETATE, PH REMARK 280 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 117.93150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 37.94200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 37.94200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 176.89725 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 37.94200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 37.94200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 58.96575 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 37.94200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.94200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 176.89725 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 37.94200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.94200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 58.96575 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 117.93150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS A PUTATIVE BIOLOGICAL DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET E 314 REMARK 465 ALA E 315 REMARK 465 ASP E 316 REMARK 465 PRO E 317 REMARK 465 ASN E 318 REMARK 465 ILE E 319 REMARK 465 LEU E 503 REMARK 465 LEU E 504 REMARK 465 ASN E 505 REMARK 465 ALA E 506 REMARK 465 PRO E 507 REMARK 465 ALA E 508 REMARK 465 THR E 509 REMARK 465 VAL E 510 REMARK 465 SER E 511 REMARK 465 GLY E 512 REMARK 465 LEU E 513 REMARK 465 VAL E 514 REMARK 465 PRO E 515 REMARK 465 ARG E 516 REMARK 465 MET C 314 REMARK 465 ALA C 315 REMARK 465 ASP C 316 REMARK 465 PRO C 317 REMARK 465 ASN C 318 REMARK 465 ILE C 319 REMARK 465 LEU C 503 REMARK 465 LEU C 504 REMARK 465 ASN C 505 REMARK 465 ALA C 506 REMARK 465 PRO C 507 REMARK 465 ALA C 508 REMARK 465 THR C 509 REMARK 465 VAL C 510 REMARK 465 SER C 511 REMARK 465 GLY C 512 REMARK 465 LEU C 513 REMARK 465 VAL C 514 REMARK 465 PRO C 515 REMARK 465 ARG C 516 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 151 O HOH E 150 3444 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN E 321 103.53 63.12 REMARK 500 VAL E 328 -63.85 -94.34 REMARK 500 TRP E 340 151.08 -49.68 REMARK 500 ASN E 409 -57.35 -127.83 REMARK 500 THR E 486 64.41 -110.47 REMARK 500 ASN C 321 115.38 66.55 REMARK 500 PRO C 324 32.58 -70.49 REMARK 500 SER C 358 -25.05 81.92 REMARK 500 ASN C 409 -57.19 -124.45 REMARK 500 PRO C 470 59.99 -96.13 REMARK 500 THR C 486 53.99 -99.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO E 466 CYS E 467 -139.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GHW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF S1 RBD IN COMPLEX WITH A NEUTRALIZING REMARK 900 ANTIBODY REMARK 900 RELATED ID: 2AJF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF S1 RBD IN COMPLEX WITH ITS RECEPTOR DBREF 2GHV E 317 510 UNP P59594 SPIKE_CVHSA 317 512 DBREF 2GHV C 317 510 UNP P59594 SPIKE_CVHSA 317 512 SEQADV 2GHV MET C 314 UNP P59594 CLONING ARTIFACT SEQADV 2GHV ALA C 315 UNP P59594 CLONING ARTIFACT SEQADV 2GHV ASP C 316 UNP P59594 CLONING ARTIFACT SEQADV 2GHV SER C 511 UNP P59594 CLONING ARTIFACT SEQADV 2GHV GLY C 512 UNP P59594 CLONING ARTIFACT SEQADV 2GHV LEU C 513 UNP P59594 CLONING ARTIFACT SEQADV 2GHV VAL C 514 UNP P59594 CLONING ARTIFACT SEQADV 2GHV PRO C 515 UNP P59594 CLONING ARTIFACT SEQADV 2GHV ARG C 516 UNP P59594 CLONING ARTIFACT SEQADV 2GHV MET E 314 UNP P59594 CLONING ARTIFACT SEQADV 2GHV ALA E 315 UNP P59594 CLONING ARTIFACT SEQADV 2GHV ASP E 316 UNP P59594 CLONING ARTIFACT SEQADV 2GHV SER E 511 UNP P59594 CLONING ARTIFACT SEQADV 2GHV GLY E 512 UNP P59594 CLONING ARTIFACT SEQADV 2GHV LEU E 513 UNP P59594 CLONING ARTIFACT SEQADV 2GHV VAL E 514 UNP P59594 CLONING ARTIFACT SEQADV 2GHV PRO E 515 UNP P59594 CLONING ARTIFACT SEQADV 2GHV ARG E 516 UNP P59594 CLONING ARTIFACT SEQRES 1 E 203 MET ALA ASP PRO ASN ILE THR ASN LEU CYS PRO PHE GLY SEQRES 2 E 203 GLU VAL PHE ASN ALA THR LYS PHE PRO SER VAL TYR ALA SEQRES 3 E 203 TRP GLU ARG LYS LYS ILE SER ASN CYS VAL ALA ASP TYR SEQRES 4 E 203 SER VAL LEU TYR ASN SER THR PHE PHE SER THR PHE LYS SEQRES 5 E 203 CYS TYR GLY VAL SER ALA THR LYS LEU ASN ASP LEU CYS SEQRES 6 E 203 PHE SER ASN VAL TYR ALA ASP SER PHE VAL VAL LYS GLY SEQRES 7 E 203 ASP ASP VAL ARG GLN ILE ALA PRO GLY GLN THR GLY VAL SEQRES 8 E 203 ILE ALA ASP TYR ASN TYR LYS LEU PRO ASP ASP PHE MET SEQRES 9 E 203 GLY CYS VAL LEU ALA TRP ASN THR ARG ASN ILE ASP ALA SEQRES 10 E 203 THR SER THR GLY ASN TYR ASN TYR LYS TYR ARG TYR LEU SEQRES 11 E 203 ARG HIS GLY LYS LEU ARG PRO PHE GLU ARG ASP ILE SER SEQRES 12 E 203 ASN VAL PRO PHE SER PRO ASP GLY LYS PRO CYS THR PRO SEQRES 13 E 203 PRO ALA LEU ASN CYS TYR TRP PRO LEU ASN ASP TYR GLY SEQRES 14 E 203 PHE TYR THR THR THR GLY ILE GLY TYR GLN PRO TYR ARG SEQRES 15 E 203 VAL VAL VAL LEU SER PHE GLU LEU LEU ASN ALA PRO ALA SEQRES 16 E 203 THR VAL SER GLY LEU VAL PRO ARG SEQRES 1 C 203 MET ALA ASP PRO ASN ILE THR ASN LEU CYS PRO PHE GLY SEQRES 2 C 203 GLU VAL PHE ASN ALA THR LYS PHE PRO SER VAL TYR ALA SEQRES 3 C 203 TRP GLU ARG LYS LYS ILE SER ASN CYS VAL ALA ASP TYR SEQRES 4 C 203 SER VAL LEU TYR ASN SER THR PHE PHE SER THR PHE LYS SEQRES 5 C 203 CYS TYR GLY VAL SER ALA THR LYS LEU ASN ASP LEU CYS SEQRES 6 C 203 PHE SER ASN VAL TYR ALA ASP SER PHE VAL VAL LYS GLY SEQRES 7 C 203 ASP ASP VAL ARG GLN ILE ALA PRO GLY GLN THR GLY VAL SEQRES 8 C 203 ILE ALA ASP TYR ASN TYR LYS LEU PRO ASP ASP PHE MET SEQRES 9 C 203 GLY CYS VAL LEU ALA TRP ASN THR ARG ASN ILE ASP ALA SEQRES 10 C 203 THR SER THR GLY ASN TYR ASN TYR LYS TYR ARG TYR LEU SEQRES 11 C 203 ARG HIS GLY LYS LEU ARG PRO PHE GLU ARG ASP ILE SER SEQRES 12 C 203 ASN VAL PRO PHE SER PRO ASP GLY LYS PRO CYS THR PRO SEQRES 13 C 203 PRO ALA LEU ASN CYS TYR TRP PRO LEU ASN ASP TYR GLY SEQRES 14 C 203 PHE TYR THR THR THR GLY ILE GLY TYR GLN PRO TYR ARG SEQRES 15 C 203 VAL VAL VAL LEU SER PHE GLU LEU LEU ASN ALA PRO ALA SEQRES 16 C 203 THR VAL SER GLY LEU VAL PRO ARG FORMUL 3 HOH *152(H2 O) HELIX 1 1 PHE E 325 ASN E 330 1 6 HELIX 2 2 SER E 336 TRP E 340 5 5 HELIX 3 3 ASP E 351 LEU E 355 5 5 HELIX 4 4 SER E 370 PHE E 379 5 10 HELIX 5 5 ASP E 392 ILE E 397 5 6 HELIX 6 6 GLY E 403 ASN E 409 1 7 HELIX 7 7 THR E 425 ALA E 430 1 6 HELIX 8 8 GLY E 488 TYR E 491 5 4 HELIX 9 9 PRO C 324 ASN C 330 1 7 HELIX 10 10 SER C 336 TRP C 340 5 5 HELIX 11 11 ASP C 351 LEU C 355 5 5 HELIX 12 12 SER C 370 PHE C 379 5 10 HELIX 13 13 ASP C 392 ILE C 397 5 6 HELIX 14 14 GLY C 403 ASN C 409 1 7 HELIX 15 15 THR C 425 ALA C 430 1 6 HELIX 16 16 GLY C 488 TYR C 491 5 4 SHEET 1 A 5 GLU E 341 ILE E 345 0 SHEET 2 A 5 VAL E 382 LYS E 390 -1 O VAL E 382 N ILE E 345 SHEET 3 A 5 PRO E 493 PHE E 501 -1 O VAL E 498 N ASP E 385 SHEET 4 A 5 GLY E 418 ASN E 424 -1 N CYS E 419 O LEU E 499 SHEET 5 A 5 THR E 363 TYR E 367 -1 N LYS E 365 O VAL E 420 SHEET 1 B 2 LYS E 439 ARG E 441 0 SHEET 2 B 2 LEU E 478 ASP E 480 -1 O ASN E 479 N TYR E 440 SHEET 1 C 5 GLU C 341 ILE C 345 0 SHEET 2 C 5 VAL C 382 LYS C 390 -1 O ALA C 384 N LYS C 343 SHEET 3 C 5 PRO C 493 SER C 500 -1 O VAL C 498 N ASP C 385 SHEET 4 C 5 GLY C 418 ASN C 424 -1 N LEU C 421 O VAL C 497 SHEET 5 C 5 THR C 363 TYR C 367 -1 N TYR C 367 O GLY C 418 SHEET 1 D 2 LYS C 439 ARG C 441 0 SHEET 2 D 2 LEU C 478 ASP C 480 -1 O ASN C 479 N TYR C 440 SSBOND 1 CYS E 323 CYS E 348 1555 1555 2.59 SSBOND 2 CYS E 366 CYS E 419 1555 1555 2.12 SSBOND 3 CYS E 467 CYS E 474 1555 1555 2.07 SSBOND 4 CYS C 366 CYS C 419 1555 1555 2.08 SSBOND 5 CYS C 467 CYS C 474 1555 1555 2.08 CISPEP 1 PRO E 469 PRO E 470 0 9.32 CISPEP 2 PRO C 469 PRO C 470 0 9.58 CRYST1 75.884 75.884 235.863 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013178 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013178 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004240 0.00000