HEADER RNA 29-MAR-06 2GIP TITLE SOLUTION STRUCTURE OF A PORTION OF THE 5'UTR OF HSPA MRNA FROM TITLE 2 BRADYRHIZOBIUM JANPONICUM HAVING DELETED G83 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 28-MER; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 OTHER_DETAILS: DELG83 MICROROSE RNA SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THE SEQUENCE FOR THIS RNA NATURALLY OCCURS IN SOURCE 4 BRADYRHIZOBIUM JAPONICUM. KEYWDS A FORM RNA HELIX, RNA EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.CHOWDHURY,C.MARIS,F.H.ALLAIN,F.NARBERHAUS REVDAT 3 09-MAR-22 2GIP 1 REMARK REVDAT 2 24-FEB-09 2GIP 1 VERSN REVDAT 1 20-JUN-06 2GIP 0 JRNL AUTH S.CHOWDHURY,C.MARIS,F.H.ALLAIN,F.NARBERHAUS JRNL TITL MOLECULAR BASIS FOR TEMPERATURE SENSING BY AN RNA JRNL TITL 2 THERMOMETER. JRNL REF EMBO J. V. 25 2487 2006 JRNL REFN ISSN 0261-4189 JRNL PMID 16710302 JRNL DOI 10.1038/SJ.EMBOJ.7601128 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 7 REMARK 3 AUTHORS : DAVID CASE ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 20 STRUCTURES REMARK 4 REMARK 4 2GIP COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037167. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 30MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : RNA REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D-NOESY-13CHSQC; 2D-NOESY; 2D REMARK 210 -HSQC; TOCSY; HCCHTOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : DRX AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DYANA REMARK 210 METHOD USED : NMR REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 G A 16 O4' - C1' - N9 ANGL. DEV. = 6.2 DEGREES REMARK 500 2 G A 16 O4' - C1' - N9 ANGL. DEV. = 5.9 DEGREES REMARK 500 3 G A 16 O4' - C1' - N9 ANGL. DEV. = 5.6 DEGREES REMARK 500 4 G A 16 O4' - C1' - N9 ANGL. DEV. = 6.3 DEGREES REMARK 500 5 U A 14 C5' - C4' - C3' ANGL. DEV. = -9.4 DEGREES REMARK 500 5 G A 16 O4' - C1' - N9 ANGL. DEV. = 7.0 DEGREES REMARK 500 6 G A 16 O4' - C1' - N9 ANGL. DEV. = 6.0 DEGREES REMARK 500 7 G A 16 O4' - C1' - N9 ANGL. DEV. = 6.0 DEGREES REMARK 500 8 G A 16 O4' - C1' - N9 ANGL. DEV. = 5.8 DEGREES REMARK 500 9 G A 16 O4' - C1' - N9 ANGL. DEV. = 5.9 DEGREES REMARK 500 10 U A 14 C5' - C4' - C3' ANGL. DEV. = -9.4 DEGREES REMARK 500 10 G A 16 O4' - C1' - N9 ANGL. DEV. = 6.8 DEGREES REMARK 500 11 U A 14 C5' - C4' - C3' ANGL. DEV. = -9.5 DEGREES REMARK 500 11 G A 16 O4' - C1' - N9 ANGL. DEV. = 6.8 DEGREES REMARK 500 12 G A 16 O4' - C1' - N9 ANGL. DEV. = 6.2 DEGREES REMARK 500 13 G A 16 O4' - C1' - N9 ANGL. DEV. = 5.6 DEGREES REMARK 500 14 U A 14 C5' - C4' - C3' ANGL. DEV. = -9.5 DEGREES REMARK 500 14 G A 16 O4' - C1' - N9 ANGL. DEV. = 6.7 DEGREES REMARK 500 15 G A 16 O4' - C1' - N9 ANGL. DEV. = 6.3 DEGREES REMARK 500 16 G A 16 O4' - C1' - N9 ANGL. DEV. = 5.9 DEGREES REMARK 500 17 G A 16 O4' - C1' - N9 ANGL. DEV. = 6.2 DEGREES REMARK 500 18 G A 16 O4' - C1' - N9 ANGL. DEV. = 5.6 DEGREES REMARK 500 19 G A 16 O4' - C1' - N9 ANGL. DEV. = 6.1 DEGREES REMARK 500 20 G A 16 O4' - C1' - N9 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL DBREF 2GIP A 1 28 PDB 2GIP 2GIP 1 28 SEQRES 1 A 28 G G C C A U C U U C U C U SEQRES 2 A 28 U C G G A G G A U U U G G SEQRES 3 A 28 C C CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1