HEADER PLANT PROTEIN 30-MAR-06 2GJ0 TITLE CYCLOVIOLACIN O14 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLOVIOLACIN O14; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIOLA ODORATA; SOURCE 3 ORGANISM_COMMON: SWEET VIOLET; SOURCE 4 ORGANISM_TAXID: 97441 KEYWDS CYCLOTIDE, PLANT PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR D.C.IRELAND,M.L.COLGRAVE,D.J.CRAIK REVDAT 3 09-MAR-22 2GJ0 1 REMARK LINK REVDAT 2 17-JUN-08 2GJ0 1 JRNL VERSN REVDAT 1 11-APR-06 2GJ0 0 JRNL AUTH D.C.IRELAND,M.L.COLGRAVE,D.J.CRAIK JRNL TITL A NOVEL SUITE OF CYCLOTIDES FROM VIOLA ODORATA: SEQUENCE JRNL TITL 2 VARIATION AND THE IMPLICATIONS FOR STRUCTURE, FUNCTION AND JRNL TITL 3 STABILITY JRNL REF BIOCHEM.J. V. 400 1 2006 JRNL REFN ISSN 0264-6021 JRNL PMID 16872274 JRNL DOI 10.1042/BJ20060627 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DIANA 1.5, CNS 1.1 REMARK 3 AUTHORS : GUNTERT ET AL (DIANA), BRUNGER ET AL (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GJ0 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000037177. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 290; 298 REMARK 210 PH : 3.5; 3.5 REMARK 210 IONIC STRENGTH : 1; 1 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5MM CYCLOVIOLACIN O14 IN 90% REMARK 210 H2O 10% D2O; 1.5MM CYCLOVIOLACIN REMARK 210 O14 IN 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D TOCSY; 2D NOESY; DQF-COSY; E REMARK 210 -COSY; HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : ARX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.110 REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS AND MOLECULAR REMARK 210 DYNAMICS AND ENERGY MINIMIZATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: TEMPERATURE COEFFICIENT CALCULATED BY TOCSY THROUGH REMARK 210 TEMPERATURES 280-320K REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 11 -125.15 -153.30 REMARK 500 1 LYS A 12 49.91 -79.13 REMARK 500 1 LYS A 24 65.44 -150.24 REMARK 500 1 PRO A 26 48.63 -99.39 REMARK 500 2 LYS A 24 52.22 -147.44 REMARK 500 2 PRO A 26 37.92 -93.65 REMARK 500 3 CYS A 10 -135.77 -89.78 REMARK 500 3 PHE A 11 -55.46 70.29 REMARK 500 3 CYS A 22 48.43 -74.94 REMARK 500 3 LYS A 24 55.89 -152.98 REMARK 500 3 PRO A 26 43.62 -100.20 REMARK 500 4 LYS A 12 147.93 176.80 REMARK 500 4 LYS A 24 55.71 -141.51 REMARK 500 4 PRO A 26 43.08 -94.50 REMARK 500 5 PHE A 11 -80.16 61.34 REMARK 500 5 LYS A 12 48.53 -179.00 REMARK 500 6 PHE A 11 36.38 -146.34 REMARK 500 6 LYS A 12 11.10 -176.67 REMARK 500 6 PRO A 26 49.86 -98.56 REMARK 500 7 PRO A 26 47.15 -97.10 REMARK 500 8 PHE A 11 -55.05 -152.93 REMARK 500 8 PRO A 26 52.44 -99.02 REMARK 500 9 PHE A 11 35.44 -76.61 REMARK 500 9 LYS A 12 31.61 -174.45 REMARK 500 9 LYS A 24 53.00 -154.22 REMARK 500 9 PRO A 26 37.36 -96.33 REMARK 500 10 PHE A 11 -138.67 -102.20 REMARK 500 10 PRO A 26 48.82 -105.61 REMARK 500 11 PHE A 11 -67.35 64.66 REMARK 500 11 LYS A 12 26.81 -169.28 REMARK 500 11 LYS A 24 69.49 -113.61 REMARK 500 12 CYS A 10 39.18 -88.46 REMARK 500 12 LYS A 12 40.20 -94.46 REMARK 500 12 PRO A 26 67.51 -111.96 REMARK 500 13 PHE A 11 49.14 -74.33 REMARK 500 13 LYS A 12 64.08 71.34 REMARK 500 13 PRO A 26 39.02 -95.50 REMARK 500 14 LYS A 12 60.20 -158.87 REMARK 500 15 PRO A 26 31.78 -99.42 REMARK 500 16 CYS A 10 49.21 -89.27 REMARK 500 16 LYS A 12 41.18 -151.19 REMARK 500 16 LYS A 24 53.31 -155.18 REMARK 500 16 PRO A 26 45.60 -97.39 REMARK 500 18 PHE A 11 -87.17 60.72 REMARK 500 19 PHE A 11 -66.09 61.53 REMARK 500 19 LYS A 12 16.16 -163.13 REMARK 500 20 PHE A 11 -138.95 -110.93 REMARK 500 20 LYS A 14 -171.92 -173.05 REMARK 500 20 PRO A 26 39.51 -95.51 REMARK 500 REMARK 500 REMARK: NULL DBREF 2GJ0 A 1 31 UNP P85177 CYO14_VIOOD 1 31 SEQRES 1 A 31 GLY SER ILE PRO ALA CYS GLY GLU SER CYS PHE LYS GLY SEQRES 2 A 31 LYS CYS TYR THR PRO GLY CYS SER CYS SER LYS TYR PRO SEQRES 3 A 31 LEU CYS ALA LYS ASN HELIX 1 1 SER A 2 GLY A 7 1 6 SHEET 1 A 2 CYS A 20 LYS A 24 0 SHEET 2 A 2 LEU A 27 LYS A 30 -1 O ALA A 29 N SER A 21 SSBOND 1 CYS A 6 CYS A 20 1555 1555 2.03 SSBOND 2 CYS A 10 CYS A 22 1555 1555 2.03 SSBOND 3 CYS A 15 CYS A 28 1555 1555 2.03 LINK N GLY A 1 C ASN A 31 1555 1555 1.33 CISPEP 1 TYR A 25 PRO A 26 1 0.67 CISPEP 2 TYR A 25 PRO A 26 2 1.09 CISPEP 3 TYR A 25 PRO A 26 3 0.96 CISPEP 4 TYR A 25 PRO A 26 4 0.84 CISPEP 5 TYR A 25 PRO A 26 5 1.04 CISPEP 6 TYR A 25 PRO A 26 6 1.19 CISPEP 7 TYR A 25 PRO A 26 7 0.74 CISPEP 8 TYR A 25 PRO A 26 8 0.73 CISPEP 9 TYR A 25 PRO A 26 9 1.18 CISPEP 10 TYR A 25 PRO A 26 10 0.86 CISPEP 11 TYR A 25 PRO A 26 11 0.65 CISPEP 12 TYR A 25 PRO A 26 12 -0.84 CISPEP 13 TYR A 25 PRO A 26 13 0.91 CISPEP 14 TYR A 25 PRO A 26 14 1.18 CISPEP 15 TYR A 25 PRO A 26 15 0.46 CISPEP 16 TYR A 25 PRO A 26 16 1.16 CISPEP 17 TYR A 25 PRO A 26 17 0.89 CISPEP 18 TYR A 25 PRO A 26 18 0.53 CISPEP 19 TYR A 25 PRO A 26 19 0.63 CISPEP 20 TYR A 25 PRO A 26 20 0.93 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1