HEADER METAL BINDING PROTEIN 30-MAR-06 2GJ2 TITLE CRYSTAL STRUCTURE OF VP9 FROM WHITE SPOT SYNDROME VIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: WSV230; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: VP9; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHRIMP WHITE SPOT SYNDROME VIRUS; SOURCE 3 ORGANISM_TAXID: 92652; SOURCE 4 GENE: WSV230; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS FERREDOXIN FOLD, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.LIU,J.L.WU,J.X.SONG,J.SIVARAMAN,C.L.HEW REVDAT 4 13-MAR-24 2GJ2 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 2GJ2 1 VERSN REVDAT 2 31-OCT-06 2GJ2 1 JRNL REVDAT 1 19-SEP-06 2GJ2 0 JRNL AUTH Y.LIU,J.L.WU,J.X.SONG,J.SIVARAMAN,C.L.HEW JRNL TITL IDENTIFICATION OF A NOVEL NONSTRUCTURAL PROTEIN, VP9, FROM JRNL TITL 2 WHITE SPOT SYNDROME VIRUS: ITS STRUCTURE REVEALS A JRNL TITL 3 FERREDOXIN FOLD WITH SPECIFIC METAL BINDING SITES JRNL REF J.VIROL. V. 80 10419 2006 JRNL REFN ISSN 0022-538X JRNL PMID 16956937 JRNL DOI 10.1128/JVI.00698-06 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 34301 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1812 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2452 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 125 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GJ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037179. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-04 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.7 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38474 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.270 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.27 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M SODIUM ACETATE, 100MM MES, 25MM REMARK 280 CADMIUM SULFATE, 3% GLYCEROL, PH 6.3, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.06650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.48950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.10250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.48950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.06650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.10250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 -1.000000 0.000000 0.000000 74.13300 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 -39.10250 REMARK 350 BIOMT3 1 0.000000 0.000000 -1.000000 39.48950 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -37.06650 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 39.10250 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 74.13300 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 39.10250 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 39.48950 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 37.06650 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 39.10250 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 81 REMARK 465 GLU A 82 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 THR B 81 REMARK 465 GLU B 82 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 THR C 81 REMARK 465 GLU C 82 REMARK 465 GLY D -2 REMARK 465 SER D -1 REMARK 465 HIS D 0 REMARK 465 MET D 1 REMARK 465 THR D 81 REMARK 465 GLU D 82 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 44 CG SD CE REMARK 470 MET B 44 CG SD CE REMARK 470 MET C 44 CG SD CE REMARK 470 ILE C 77 CB CG1 CG2 CD1 REMARK 470 MET D 44 CG SD CE REMARK 470 ILE D 77 CB CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU D 60 CG GLU D 60 CD 0.093 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU C 71 CA - CB - CG ANGL. DEV. = 16.5 DEGREES REMARK 500 LEU D 71 CA - CB - CG ANGL. DEV. = 16.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 78 148.03 159.00 REMARK 500 PRO A 79 69.56 -113.38 REMARK 500 ASP B 39 146.01 -178.21 REMARK 500 ILE C 77 115.79 57.33 REMARK 500 LEU D 71 129.86 -39.69 REMARK 500 ILE D 77 114.03 36.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 201 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 9 OD1 REMARK 620 2 ASP A 9 OD2 56.6 REMARK 620 3 HOH A 228 O 114.6 132.6 REMARK 620 4 GLU D 31 OE2 120.8 64.7 109.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 203 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 31 OE1 REMARK 620 2 GLU D 31 OE1 175.8 REMARK 620 3 HOH D 239 O 95.3 81.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD D 204 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 31 OE2 REMARK 620 2 HOH A 230 O 109.4 REMARK 620 3 ASP D 9 OD2 76.3 117.3 REMARK 620 4 CYS D 46 SG 124.3 105.6 122.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 205 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 9 OD2 REMARK 620 2 GLU C 31 OE2 76.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 202 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 31 OE1 REMARK 620 2 GLU C 31 OE1 156.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD C 206 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 31 OE2 REMARK 620 2 ASP C 9 OD2 73.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD D 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD C 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD D 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD C 208 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GJI RELATED DB: PDB REMARK 900 NMR SOLUTION STRUCTURE OF THE SAME PROTEIN DBREF 2GJ2 A 1 82 UNP Q91LD0 Q91LD0_WSSV 1 82 DBREF 2GJ2 B 1 82 UNP Q91LD0 Q91LD0_WSSV 1 82 DBREF 2GJ2 C 1 82 UNP Q91LD0 Q91LD0_WSSV 1 82 DBREF 2GJ2 D 1 82 UNP Q91LD0 Q91LD0_WSSV 1 82 SEQADV 2GJ2 GLY A -2 UNP Q91LD0 EXPRESSION TAG SEQADV 2GJ2 SER A -1 UNP Q91LD0 EXPRESSION TAG SEQADV 2GJ2 HIS A 0 UNP Q91LD0 EXPRESSION TAG SEQADV 2GJ2 GLY B -2 UNP Q91LD0 EXPRESSION TAG SEQADV 2GJ2 SER B -1 UNP Q91LD0 EXPRESSION TAG SEQADV 2GJ2 HIS B 0 UNP Q91LD0 EXPRESSION TAG SEQADV 2GJ2 GLY C -2 UNP Q91LD0 EXPRESSION TAG SEQADV 2GJ2 SER C -1 UNP Q91LD0 EXPRESSION TAG SEQADV 2GJ2 HIS C 0 UNP Q91LD0 EXPRESSION TAG SEQADV 2GJ2 GLY D -2 UNP Q91LD0 EXPRESSION TAG SEQADV 2GJ2 SER D -1 UNP Q91LD0 EXPRESSION TAG SEQADV 2GJ2 HIS D 0 UNP Q91LD0 EXPRESSION TAG SEQRES 1 A 85 GLY SER HIS MET ALA THR PHE GLN THR ASP ALA ASP PHE SEQRES 2 A 85 LEU LEU VAL GLY ASP ASP THR SER ARG TYR GLU GLU VAL SEQRES 3 A 85 MET LYS THR PHE ASP THR VAL GLU ALA VAL ARG LYS SER SEQRES 4 A 85 ASP LEU ASP ASP ARG VAL TYR MET VAL CYS LEU LYS GLN SEQRES 5 A 85 GLY SER THR PHE VAL LEU ASN GLY GLY ILE GLU GLU LEU SEQRES 6 A 85 ARG LEU LEU THR GLY ASP SER THR LEU GLU ILE GLN PRO SEQRES 7 A 85 MET ILE VAL PRO THR THR GLU SEQRES 1 B 85 GLY SER HIS MET ALA THR PHE GLN THR ASP ALA ASP PHE SEQRES 2 B 85 LEU LEU VAL GLY ASP ASP THR SER ARG TYR GLU GLU VAL SEQRES 3 B 85 MET LYS THR PHE ASP THR VAL GLU ALA VAL ARG LYS SER SEQRES 4 B 85 ASP LEU ASP ASP ARG VAL TYR MET VAL CYS LEU LYS GLN SEQRES 5 B 85 GLY SER THR PHE VAL LEU ASN GLY GLY ILE GLU GLU LEU SEQRES 6 B 85 ARG LEU LEU THR GLY ASP SER THR LEU GLU ILE GLN PRO SEQRES 7 B 85 MET ILE VAL PRO THR THR GLU SEQRES 1 C 85 GLY SER HIS MET ALA THR PHE GLN THR ASP ALA ASP PHE SEQRES 2 C 85 LEU LEU VAL GLY ASP ASP THR SER ARG TYR GLU GLU VAL SEQRES 3 C 85 MET LYS THR PHE ASP THR VAL GLU ALA VAL ARG LYS SER SEQRES 4 C 85 ASP LEU ASP ASP ARG VAL TYR MET VAL CYS LEU LYS GLN SEQRES 5 C 85 GLY SER THR PHE VAL LEU ASN GLY GLY ILE GLU GLU LEU SEQRES 6 C 85 ARG LEU LEU THR GLY ASP SER THR LEU GLU ILE GLN PRO SEQRES 7 C 85 MET ILE VAL PRO THR THR GLU SEQRES 1 D 85 GLY SER HIS MET ALA THR PHE GLN THR ASP ALA ASP PHE SEQRES 2 D 85 LEU LEU VAL GLY ASP ASP THR SER ARG TYR GLU GLU VAL SEQRES 3 D 85 MET LYS THR PHE ASP THR VAL GLU ALA VAL ARG LYS SER SEQRES 4 D 85 ASP LEU ASP ASP ARG VAL TYR MET VAL CYS LEU LYS GLN SEQRES 5 D 85 GLY SER THR PHE VAL LEU ASN GLY GLY ILE GLU GLU LEU SEQRES 6 D 85 ARG LEU LEU THR GLY ASP SER THR LEU GLU ILE GLN PRO SEQRES 7 D 85 MET ILE VAL PRO THR THR GLU HET CD A 201 1 HET CD A 203 1 HET CD B 202 1 HET CD B 205 1 HET CD C 206 1 HET CD C 208 1 HET CD D 204 1 HET CD D 207 1 HETNAM CD CADMIUM ION FORMUL 5 CD 8(CD 2+) FORMUL 13 HOH *125(H2 O) HELIX 1 1 ARG A 19 LYS A 25 1 7 HELIX 2 2 GLY A 58 GLY A 67 1 10 HELIX 3 3 ARG B 19 LYS B 25 1 7 HELIX 4 4 GLY B 57 GLY B 67 1 11 HELIX 5 5 ASP C 16 SER C 18 5 3 HELIX 6 6 ARG C 19 THR C 26 1 8 HELIX 7 7 GLY C 58 GLY C 67 1 10 HELIX 8 8 ARG D 19 LYS D 25 1 7 HELIX 9 9 GLY D 58 GLY D 67 1 10 SHEET 1 A 2 PHE A 4 THR A 6 0 SHEET 2 A 2 PHE A 53 LEU A 55 -1 O LEU A 55 N PHE A 4 SHEET 1 B 4 VAL A 30 LYS A 35 0 SHEET 2 B 4 VAL A 42 LEU A 47 -1 O MET A 44 N ARG A 34 SHEET 3 B 4 PHE A 10 VAL A 13 -1 N LEU A 12 O TYR A 43 SHEET 4 B 4 GLU A 72 PRO A 75 -1 O GLN A 74 N LEU A 11 SHEET 1 C 2 PHE B 4 THR B 6 0 SHEET 2 C 2 PHE B 53 LEU B 55 -1 O LEU B 55 N PHE B 4 SHEET 1 D 4 VAL B 30 LYS B 35 0 SHEET 2 D 4 VAL B 42 LEU B 47 -1 O CYS B 46 N ALA B 32 SHEET 3 D 4 PHE B 10 VAL B 13 -1 N LEU B 12 O TYR B 43 SHEET 4 D 4 GLU B 72 PRO B 75 -1 O GLU B 72 N VAL B 13 SHEET 1 E 2 PHE C 4 THR C 6 0 SHEET 2 E 2 PHE C 53 LEU C 55 -1 O LEU C 55 N PHE C 4 SHEET 1 F 4 VAL C 30 LYS C 35 0 SHEET 2 F 4 VAL C 42 LEU C 47 -1 O MET C 44 N ARG C 34 SHEET 3 F 4 PHE C 10 VAL C 13 -1 N PHE C 10 O VAL C 45 SHEET 4 F 4 GLU C 72 PRO C 75 -1 O GLU C 72 N VAL C 13 SHEET 1 G 2 PHE D 4 THR D 6 0 SHEET 2 G 2 PHE D 53 LEU D 55 -1 O LEU D 55 N PHE D 4 SHEET 1 H 4 VAL D 30 LYS D 35 0 SHEET 2 H 4 VAL D 42 LEU D 47 -1 O CYS D 46 N ALA D 32 SHEET 3 H 4 PHE D 10 VAL D 13 -1 N PHE D 10 O VAL D 45 SHEET 4 H 4 GLU D 72 PRO D 75 -1 O GLU D 72 N VAL D 13 LINK OD1 ASP A 9 CD CD A 201 1555 1555 2.38 LINK OD2 ASP A 9 CD CD A 201 1555 1555 2.29 LINK OE1 GLU A 31 CD CD A 203 1555 1555 1.93 LINK OE2 GLU A 31 CD CD D 204 1555 1555 1.89 LINK CD CD A 201 O HOH A 228 1555 1555 2.17 LINK CD CD A 201 OE2 GLU D 31 1555 1555 2.09 LINK CD CD A 203 OE1 GLU D 31 1555 1555 1.89 LINK CD CD A 203 O HOH D 239 1555 1555 2.22 LINK O HOH A 230 CD CD D 204 1555 1555 1.95 LINK OD2 ASP B 9 CD CD B 205 1555 1555 2.35 LINK OE1 GLU B 31 CD CD B 202 1555 1555 2.25 LINK OE2 GLU B 31 CD CD C 206 1555 1555 2.05 LINK CD CD B 202 OE1 GLU C 31 1555 1555 2.31 LINK CD CD B 205 OE2 GLU C 31 1555 1555 2.06 LINK OD2 ASP C 9 CD CD C 206 1555 1555 2.43 LINK OE1 GLU C 60 CD CD C 208 1555 1555 1.57 LINK OD2 ASP D 9 CD CD D 204 1555 1555 2.31 LINK SG CYS D 46 CD CD D 204 1555 1555 1.77 LINK OE1 GLU D 72 CD CD D 207 1555 1555 2.43 SITE 1 AC1 5 ASP A 9 CYS A 46 CD A 203 HOH A 228 SITE 2 AC1 5 GLU D 31 SITE 1 AC2 6 GLU B 31 CYS B 46 CD B 205 GLU C 31 SITE 2 AC2 6 CYS C 46 CD C 206 SITE 1 AC3 7 GLU A 31 CYS A 46 CD A 201 GLU D 31 SITE 2 AC3 7 CYS D 46 CD D 204 HOH D 239 SITE 1 AC4 5 GLU A 31 CD A 203 HOH A 230 ASP D 9 SITE 2 AC4 5 CYS D 46 SITE 1 AC5 4 ASP B 9 CYS B 46 CD B 202 GLU C 31 SITE 1 AC6 4 GLU B 31 CD B 202 ASP C 9 CYS C 46 SITE 1 AC7 1 GLU D 72 SITE 1 AC8 1 GLU C 60 CRYST1 74.133 78.205 78.979 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013489 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012787 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012662 0.00000