HEADER TRANSLATION/RNA 30-MAR-06 2GJE TITLE STRUCTURE OF A GUIDERNA-BINDING PROTEIN COMPLEX BOUND TO A GRNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: GUIDE RNA 40-MER; COMPND 3 CHAIN: R; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RNA TETRAMER; COMPND 7 CHAIN: S; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: MITOCHONDRIAL RNA-BINDING PROTEIN 2; COMPND 11 CHAIN: A; COMPND 12 SYNONYM: MRP2, GUIDE RNA-BINDING PROTEIN; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 4; COMPND 15 MOLECULE: MITOCHONDRIAL RNA-BINDING PROTEIN 1; COMPND 16 CHAIN: D; COMPND 17 SYNONYM: MRP1; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI; SOURCE 7 ORGANISM_TAXID: 185431; SOURCE 8 STRAIN: TREU927; SOURCE 9 GENE: MRP1; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID, COEXPRESSION; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PETDUET-1; SOURCE 15 MOL_ID: 4; SOURCE 16 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI; SOURCE 17 ORGANISM_TAXID: 185431; SOURCE 18 STRAIN: TREU927; SOURCE 19 GENE: MRP2; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 21 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 22 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 23 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID, COEXPRESSION; SOURCE 24 EXPRESSION_SYSTEM_PLASMID: PETDUET-1 KEYWDS GUIDE RNA; KRNA EDITING; RNA BINDING PROTEIN, TRANSLATION-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.A.SCHUMACHER,E.KARAMOOZ,A.ZIKOVA,L.TRANTIREK,J.LUKES REVDAT 3 13-JUL-11 2GJE 1 VERSN REVDAT 2 24-FEB-09 2GJE 1 VERSN REVDAT 1 05-SEP-06 2GJE 0 JRNL AUTH M.A.SCHUMACHER,E.KARAMOOZ,A.ZIKOVA,L.TRANTIREK,J.LUKES JRNL TITL CRYSTAL STRUCTURES OF T. BRUCEI MRP1/MRP2 GUIDE-RNA BINDING JRNL TITL 2 COMPLEX REVEAL RNA MATCHMAKING MECHANISM. JRNL REF CELL(CAMBRIDGE,MASS.) V. 126 701 2006 JRNL REFN ISSN 0092-8674 JRNL PMID 16923390 JRNL DOI 10.1016/J.CELL.2006.06.047 REMARK 2 REMARK 2 RESOLUTION. 3.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 6089525.040 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.8 REMARK 3 NUMBER OF REFLECTIONS : 8111 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.282 REMARK 3 FREE R VALUE : 0.300 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.500 REMARK 3 FREE R VALUE TEST SET COUNT : 606 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.012 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.37 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.58 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 67.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 913 REMARK 3 BIN R VALUE (WORKING SET) : 0.3240 REMARK 3 BIN FREE R VALUE : 0.3800 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 58 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2391 REMARK 3 NUCLEIC ACID ATOMS : 377 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 1 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 82.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 11.71000 REMARK 3 B22 (A**2) : 11.71000 REMARK 3 B33 (A**2) : -23.41000 REMARK 3 B12 (A**2) : 3.64000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM SIGMAA (A) : 0.59 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.52 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.65 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : 2.40 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.48 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.27 REMARK 3 BSOL : 53.76 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GJE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-APR-06. REMARK 100 THE RCSB ID CODE IS RCSB037191. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.989 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ADSC REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8126 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.370 REMARK 200 RESOLUTION RANGE LOW (A) : 81.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, HEPES, ISOPROPANOL, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 280K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.10000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.20000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.65000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 67.75000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 13.55000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 27.10000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 54.20000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 67.75000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 40.65000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 13.55000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MRP1/MRP2 FORM A HETEROTETRAMER WITH PSEUDO C4 SYMMETRY ++ REMARK 300 RNA SINGLE STRAND REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: R, S, A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 A R 1 REMARK 465 A R 2 REMARK 465 A R 3 REMARK 465 U R 4 REMARK 465 A R 5 REMARK 465 C R 6 REMARK 465 G R 7 REMARK 465 A R 8 REMARK 465 U R 9 REMARK 465 G R 10 REMARK 465 G R 24 REMARK 465 U R 25 REMARK 465 A R 26 REMARK 465 U R 27 REMARK 465 A R 28 REMARK 465 G R 29 REMARK 465 U R 30 REMARK 465 U R 31 REMARK 465 A R 32 REMARK 465 G R 33 REMARK 465 U R 34 REMARK 465 G R 35 REMARK 465 U R 36 REMARK 465 A R 37 REMARK 465 U R 38 REMARK 465 A R 39 REMARK 465 GLU A 30 REMARK 465 ALA A 31 REMARK 465 ALA A 32 REMARK 465 SER A 33 REMARK 465 SER A 34 REMARK 465 SER A 35 REMARK 465 ASP A 36 REMARK 465 ALA A 37 REMARK 465 ASP A 38 REMARK 465 GLY A 39 REMARK 465 LYS A 40 REMARK 465 GLU A 41 REMARK 465 VAL A 42 REMARK 465 GLY A 43 REMARK 465 SER A 44 REMARK 465 SER A 45 REMARK 465 GLY A 46 REMARK 465 GLU A 47 REMARK 465 GLY A 48 REMARK 465 ASN A 49 REMARK 465 ARG A 50 REMARK 465 ALA A 51 REMARK 465 THR A 52 REMARK 465 GLY A 53 REMARK 465 GLY A 54 REMARK 465 LYS A 55 REMARK 465 TRP A 56 REMARK 465 ARG A 57 REMARK 465 ARG A 58 REMARK 465 PRO A 59 REMARK 465 SER A 60 REMARK 465 LEU A 61 REMARK 465 ALA A 62 REMARK 465 GLN A 63 REMARK 465 GLN A 64 REMARK 465 ALA A 176 REMARK 465 GLN A 177 REMARK 465 GLN A 178 REMARK 465 LYS A 179 REMARK 465 GLN A 180 REMARK 465 GLN A 181 REMARK 465 VAL A 182 REMARK 465 ALA A 183 REMARK 465 GLY A 184 REMARK 465 GLU A 185 REMARK 465 GLU A 186 REMARK 465 GLY A 187 REMARK 465 THR A 222 REMARK 465 SER A 223 REMARK 465 VAL A 224 REMARK 465 ALA D 20 REMARK 465 SER D 21 REMARK 465 THR D 22 REMARK 465 PHE D 23 REMARK 465 SER D 24 REMARK 465 GLY D 25 REMARK 465 VAL D 26 REMARK 465 THR D 174 REMARK 465 ARG D 175 REMARK 465 ALA D 176 REMARK 465 ALA D 177 REMARK 465 GLU D 178 REMARK 465 GLY D 179 REMARK 465 GLY D 180 REMARK 465 GLU D 181 REMARK 465 LYS D 182 REMARK 465 ILE D 183 REMARK 465 ALA D 184 REMARK 465 ALA D 185 REMARK 465 THR D 186 REMARK 465 SER D 187 REMARK 465 SER D 188 REMARK 465 ALA D 189 REMARK 465 GLU D 190 REMARK 465 GLY D 191 REMARK 465 GLY D 192 REMARK 465 ALA D 193 REMARK 465 ARG D 194 REMARK 465 ARG D 195 REMARK 465 LYS D 196 REMARK 465 ARG D 197 REMARK 465 SER D 198 REMARK 465 VAL D 199 REMARK 465 SER D 200 REMARK 465 ASP D 201 REMARK 465 THR D 202 REMARK 465 SER D 203 REMARK 465 ARG D 204 REMARK 465 TYR D 205 REMARK 465 HIS D 206 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 U R 11 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 U R 20 O6 G S 44 1.99 REMARK 500 OP2 C R 18 NZ LYS A 117 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG D 67 NH2 ARG D 67 8556 1.89 REMARK 500 NH1 ARG D 67 NH1 ARG D 67 8556 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 C R 19 O5' - P - OP1 ANGL. DEV. = -14.0 DEGREES REMARK 500 C R 19 O5' - P - OP2 ANGL. DEV. = -19.4 DEGREES REMARK 500 C R 19 O3' - P - O5' ANGL. DEV. = 14.5 DEGREES REMARK 500 C R 19 O3' - P - OP2 ANGL. DEV. = -40.0 DEGREES REMARK 500 C R 19 O3' - P - OP1 ANGL. DEV. = -35.6 DEGREES REMARK 500 U S 40 O4' - C1' - N1 ANGL. DEV. = 6.0 DEGREES REMARK 500 LEU A 71 CB - CG - CD2 ANGL. DEV. = -11.0 DEGREES REMARK 500 SER D 28 N - CA - C ANGL. DEV. = -19.2 DEGREES REMARK 500 PRO D 66 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 69 -70.25 -79.21 REMARK 500 GLN A 70 4.47 -63.34 REMARK 500 ASN A 81 84.09 -152.55 REMARK 500 ILE A 85 11.13 -59.74 REMARK 500 ARG A 87 27.09 -150.29 REMARK 500 ASP A 97 82.73 44.36 REMARK 500 LYS A 144 152.74 172.46 REMARK 500 ALA A 161 -90.11 -45.94 REMARK 500 THR A 173 -162.47 -103.33 REMARK 500 ARG A 174 117.76 -179.99 REMARK 500 VAL A 199 -24.04 -39.10 REMARK 500 SER D 28 51.98 -179.64 REMARK 500 PRO D 62 -169.29 -75.68 REMARK 500 PRO D 66 166.88 -47.76 REMARK 500 PRO D 71 -15.75 -46.41 REMARK 500 ASP D 73 98.43 -69.41 REMARK 500 ALA D 80 17.14 -67.59 REMARK 500 GLN D 137 21.56 -155.91 REMARK 500 MSE D 139 108.89 -50.94 REMARK 500 SER D 143 115.09 -166.21 REMARK 500 ASN D 148 -133.31 30.05 REMARK 500 HIS D 149 -3.13 -53.99 REMARK 500 VAL D 152 -72.54 -52.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 GLN A 70 23.1 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GIA RELATED DB: PDB REMARK 900 RELATED ID: 2GID RELATED DB: PDB DBREF 2GJE A 30 224 UNP Q952G2 Q952G2_9TRYP 30 224 DBREF 2GJE D 20 206 UNP P90629 P90629_9TRYP 20 206 DBREF 2GJE R 1 39 PDB 2GJE 2GJE 1 39 DBREF 2GJE S 40 44 PDB 2GJE 2GJE 40 44 SEQADV 2GJE MSE A 110 UNP Q952G2 MET 110 MODIFIED RESIDUE SEQADV 2GJE MSE A 125 UNP Q952G2 MET 125 MODIFIED RESIDUE SEQADV 2GJE MSE A 204 UNP Q952G2 MET 204 MODIFIED RESIDUE SEQADV 2GJE GLU D 43 UNP P90629 LEU 43 CONFLICT SEQADV 2GJE MSE D 46 UNP P90629 MET 46 MODIFIED RESIDUE SEQADV 2GJE MSE D 109 UNP P90629 MET 109 MODIFIED RESIDUE SEQADV 2GJE MSE D 139 UNP P90629 MET 139 MODIFIED RESIDUE SEQRES 1 R 39 A A A U A C G A U G U A A SEQRES 2 R 39 A U A A C C U G U A G U A SEQRES 3 R 39 U A G U U A G U G U A U A SEQRES 1 S 5 U A G U G SEQRES 1 A 195 GLU ALA ALA SER SER SER ASP ALA ASP GLY LYS GLU VAL SEQRES 2 A 195 GLY SER SER GLY GLU GLY ASN ARG ALA THR GLY GLY LYS SEQRES 3 A 195 TRP ARG ARG PRO SER LEU ALA GLN GLN ARG ALA ARG ARG SEQRES 4 A 195 ALA GLN LEU PRO PRO ALA PHE ASP VAL VAL HIS TRP ASN SEQRES 5 A 195 ASP GLU ASP ILE SER ARG GLY HIS LEU LEU ARG VAL LEU SEQRES 6 A 195 HIS ARG ASP THR PHE VAL VAL LEU ASP TYR HIS ARG GLN SEQRES 7 A 195 ALA ARG MSE LEU THR GLU GLU GLY ASN LYS ALA GLU ARG SEQRES 8 A 195 VAL VAL SER VAL MSE LEU PRO ALA VAL TYR THR ALA ARG SEQRES 9 A 195 PHE LEU ALA VAL LEU GLU GLY ARG SER GLU LYS VAL GLU SEQRES 10 A 195 VAL HIS SER ARG TYR THR ASN ALA THR PHE THR PRO ASN SEQRES 11 A 195 PRO ALA ALA PRO TYR THR PHE THR LEU LYS CYS THR SER SEQRES 12 A 195 THR ARG PRO ALA GLN GLN LYS GLN GLN VAL ALA GLY GLU SEQRES 13 A 195 GLU GLY ASP GLU THR PHE GLU TRP THR VAL GLU PHE ASP SEQRES 14 A 195 VAL ALA GLU SER LEU MSE LEU GLN ARG PHE LEU THR GLN SEQRES 15 A 195 ALA LEU HIS TYR ASN THR GLY PHE ALA ARG THR SER VAL SEQRES 1 D 187 ALA SER THR PHE SER GLY VAL GLN SER LEU PRO LYS PHE SEQRES 2 D 187 GLU ILE HIS ASP VAL ARG ASP ASP PRO ALA GLU GLY THR SEQRES 3 D 187 MSE THR ARG VAL ALA VAL ASP GLY LYS LEU LEU LEU ILE SEQRES 4 D 187 SER GLN TYR PRO GLN LEU GLY PRO ARG LYS VAL ASP PRO SEQRES 5 D 187 ASN ASP LEU SER PRO GLN PHE ASP ALA ASP ARG ARG ILE SEQRES 6 D 187 SER VAL ARG LEU ARG HIS VAL ASP LEU ALA TYR LEU VAL SEQRES 7 D 187 GLY VAL CYS LYS GLU ARG VAL PRO ARG HIS ARG MSE GLU SEQRES 8 D 187 THR LYS ALA TYR THR LEU ASP PHE GLU LYS SER ALA GLN SEQRES 9 D 187 GLY TYR HIS LEU HIS GLY LYS VAL HIS ARG VAL ALA SER SEQRES 10 D 187 GLN ARG MSE GLU ASP TRP SER VAL LYS PHE ASP ASN HIS SEQRES 11 D 187 PHE ALA VAL THR LEU GLU HIS PHE LEU GLU SER ALA LEU SEQRES 12 D 187 ASP GLU SER PHE GLY PHE ARG GLN HIS TYR ALA THR ARG SEQRES 13 D 187 ALA ALA GLU GLY GLY GLU LYS ILE ALA ALA THR SER SER SEQRES 14 D 187 ALA GLU GLY GLY ALA ARG ARG LYS ARG SER VAL SER ASP SEQRES 15 D 187 THR SER ARG TYR HIS MODRES 2GJE MSE A 110 MET SELENOMETHIONINE MODRES 2GJE MSE A 125 MET SELENOMETHIONINE MODRES 2GJE MSE A 204 MET SELENOMETHIONINE MODRES 2GJE MSE D 46 MET SELENOMETHIONINE MODRES 2GJE MSE D 109 MET SELENOMETHIONINE MODRES 2GJE MSE D 139 MET SELENOMETHIONINE HET MSE A 110 8 HET MSE A 125 8 HET MSE A 204 8 HET MSE D 46 8 HET MSE D 109 8 HET MSE D 139 8 HETNAM MSE SELENOMETHIONINE FORMUL 3 MSE 6(C5 H11 N O2 SE) FORMUL 5 HOH *(H2 O) HELIX 1 1 ARG A 65 LEU A 71 1 7 HELIX 2 2 ASP A 84 ARG A 87 5 4 HELIX 3 3 VAL A 129 GLU A 139 1 11 HELIX 4 4 ASP A 198 THR A 217 1 20 HELIX 5 5 ASP D 40 GLU D 43 5 4 HELIX 6 6 ARG D 89 LYS D 101 1 13 HELIX 7 7 ASN D 148 SER D 165 1 18 HELIX 8 8 GLY D 167 ALA D 173 1 7 SHEET 1 A 4 ALA A 74 HIS A 79 0 SHEET 2 A 4 HIS A 89 HIS A 95 -1 O VAL A 93 N PHE A 75 SHEET 3 A 4 PHE A 99 GLN A 107 -1 O VAL A 101 N LEU A 94 SHEET 4 A 4 ALA A 118 PRO A 127 -1 O VAL A 124 N LEU A 102 SHEET 1 B 4 VAL A 145 SER A 149 0 SHEET 2 B 4 THR A 152 PRO A 158 -1 O THR A 152 N SER A 149 SHEET 3 B 4 PHE A 166 SER A 172 -1 O THR A 171 N ASN A 153 SHEET 4 B 4 PHE A 191 PHE A 197 -1 O PHE A 191 N SER A 172 SHEET 1 C 4 LYS D 31 ASP D 36 0 SHEET 2 C 4 THR D 45 ASP D 52 -1 O THR D 45 N ASP D 36 SHEET 3 C 4 LEU D 55 PRO D 62 -1 O SER D 59 N ARG D 48 SHEET 4 C 4 ILE D 84 ARG D 87 -1 O ILE D 84 N GLN D 60 SHEET 1 D 4 ARG D 106 GLU D 110 0 SHEET 2 D 4 THR D 115 SER D 121 -1 O PHE D 118 N HIS D 107 SHEET 3 D 4 GLY D 124 VAL D 131 -1 O GLY D 124 N SER D 121 SHEET 4 D 4 GLU D 140 ASP D 147 -1 O PHE D 146 N TYR D 125 LINK C ARG A 109 N MSE A 110 1555 1555 1.33 LINK C MSE A 110 N LEU A 111 1555 1555 1.34 LINK C VAL A 124 N MSE A 125 1555 1555 1.33 LINK C MSE A 125 N LEU A 126 1555 1555 1.32 LINK C LEU A 203 N MSE A 204 1555 1555 1.32 LINK C MSE A 204 N LEU A 205 1555 1555 1.33 LINK C THR D 45 N MSE D 46 1555 1555 1.32 LINK C MSE D 46 N THR D 47 1555 1555 1.33 LINK C ARG D 108 N MSE D 109 1555 1555 1.33 LINK C MSE D 109 N GLU D 110 1555 1555 1.33 LINK C ARG D 138 N MSE D 139 1555 1555 1.33 LINK C MSE D 139 N GLU D 140 1555 1555 1.33 CRYST1 157.600 157.600 81.300 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006345 0.003663 0.000000 0.00000 SCALE2 0.000000 0.007327 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012300 0.00000