HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 04-APR-06 2GL5 TITLE CRYSTAL STRUCTURE OF PUTATIVE DEHYDRATASE FROM SALMONELLA THYPHIMURIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE DEHYDRATASE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_TAXID: 99287; SOURCE 4 STRAIN: LT2; SOURCE 5 GENE: STM2273; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEHYDRATASE, STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, PSI, KEYWDS 2 NYSGXRC, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS KEYWDS 3 STRUCTURAL GENOMICS, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,J.M.SAUDER,M.DICKEY,J.M.ADAMS,S.OZYURT,S.R.WASSERMAN, AUTHOR 2 J.GERLT,S.C.ALMO,S.K.BURLEY,NEW YORK SGX RESEARCH CENTER FOR AUTHOR 3 STRUCTURAL GENOMICS (NYSGXRC) REVDAT 9 30-AUG-23 2GL5 1 REMARK REVDAT 8 20-OCT-21 2GL5 1 SEQADV REVDAT 7 03-FEB-21 2GL5 1 AUTHOR REMARK SEQADV LINK REVDAT 6 14-NOV-18 2GL5 1 AUTHOR REVDAT 5 18-OCT-17 2GL5 1 REMARK REVDAT 4 13-JUL-11 2GL5 1 VERSN REVDAT 3 24-FEB-09 2GL5 1 VERSN REVDAT 2 06-MAR-07 2GL5 1 REMARK REVDAT 1 18-APR-06 2GL5 0 JRNL AUTH Y.PATSKOVSKY,J.M.SAUDER,M.DICKEY,J.M.ADAMS,S.OZYURT, JRNL AUTH 2 S.R.WASSERMAN,J.GERLT,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE DEHYDRATASE FROM SALMONELLA JRNL TITL 2 THYPHIMURIUM LT2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 99412 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3096 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7234 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1860 REMARK 3 BIN FREE R VALUE SET COUNT : 244 REMARK 3 BIN FREE R VALUE : 0.2610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6256 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 624 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 8.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.094 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.093 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.060 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.619 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6491 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8815 ; 1.216 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 830 ; 6.396 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 303 ;36.087 ;24.653 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1115 ;14.157 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;19.232 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 967 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4960 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3379 ; 0.188 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4497 ; 0.312 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 1076 ; 0.209 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 120 ; 0.149 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 98 ; 0.208 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4098 ; 2.174 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6458 ; 2.732 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2700 ; 3.531 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2342 ; 4.879 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 2 A 400 4 REMARK 3 1 B 2 B 400 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 3117 ; 0.24 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 3117 ; 0.96 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2GL5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037254. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM, TRUNCATE REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA, TRUNCATE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 119062 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.520 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : 0.07400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.15700 REMARK 200 R SYM FOR SHELL (I) : 0.13500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1MUC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES, PH 7.0, 25% PEG MME550, REMARK 280 50MM MGCL2, 10% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 58.48600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.48600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 58.04750 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 58.48600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.48600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.04750 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 58.48600 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 58.48600 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 58.04750 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 58.48600 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 58.48600 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 58.04750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 43360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 83660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -187.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 GLU A 401 REMARK 465 GLY A 402 REMARK 465 HIS A 403 REMARK 465 HIS A 404 REMARK 465 HIS A 405 REMARK 465 HIS A 406 REMARK 465 HIS A 407 REMARK 465 HIS A 408 REMARK 465 MET B -1 REMARK 465 GLU B 401 REMARK 465 GLY B 402 REMARK 465 HIS B 403 REMARK 465 HIS B 404 REMARK 465 HIS B 405 REMARK 465 HIS B 406 REMARK 465 HIS B 407 REMARK 465 HIS B 408 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR A 317 OE2 GLU B 287 3555 2.15 REMARK 500 OE2 GLU A 287 OH TYR B 317 3555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 24 77.00 -154.62 REMARK 500 PHE A 84 -60.72 68.10 REMARK 500 GLN A 134 55.63 74.83 REMARK 500 VAL A 147 -51.27 -121.34 REMARK 500 ARG A 243 77.55 55.02 REMARK 500 THR A 278 167.22 67.12 REMARK 500 LEU A 300 -39.23 -132.26 REMARK 500 ASP B 17 88.90 -155.98 REMARK 500 MET B 20 38.06 -99.33 REMARK 500 ASN B 24 75.04 -150.22 REMARK 500 PHE B 84 -61.90 68.06 REMARK 500 GLN B 134 55.05 76.51 REMARK 500 ARG B 243 72.27 58.02 REMARK 500 THR B 278 165.14 67.71 REMARK 500 LEU B 300 -38.88 -130.25 REMARK 500 CYS B 326 77.43 -153.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 699 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 222 OE1 REMARK 620 2 GLU A 248 OE2 89.9 REMARK 620 3 GLU A 274 OE2 174.7 88.6 REMARK 620 4 HOH A 960 O 91.7 87.5 93.3 REMARK 620 5 HOH A 961 O 87.7 104.2 87.7 168.2 REMARK 620 6 HOH A 962 O 94.1 169.1 88.3 82.2 86.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 700 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 222 OE1 REMARK 620 2 GLU B 248 OE2 88.4 REMARK 620 3 GLU B 274 OE2 175.9 90.6 REMARK 620 4 HOH B 981 O 93.9 171.1 87.7 REMARK 620 5 HOH B 982 O 88.7 99.2 87.6 89.5 REMARK 620 6 HOH B 983 O 90.7 90.0 93.3 81.4 170.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 699 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 701 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-9270A RELATED DB: TARGETDB DBREF 2GL5 A 2 400 UNP Q8ZNH1 Q8ZNH1_SALTY 2 400 DBREF 2GL5 B 2 400 UNP Q8ZNH1 Q8ZNH1_SALTY 2 400 SEQADV 2GL5 MET A -1 UNP Q8ZNH1 CLONING ARTIFACT SEQADV 2GL5 SER A 0 UNP Q8ZNH1 CLONING ARTIFACT SEQADV 2GL5 LEU A 1 UNP Q8ZNH1 CLONING ARTIFACT SEQADV 2GL5 ASN A 143 UNP Q8ZNH1 ARG 143 ENGINEERED MUTATION SEQADV 2GL5 GLU A 401 UNP Q8ZNH1 CLONING ARTIFACT SEQADV 2GL5 GLY A 402 UNP Q8ZNH1 CLONING ARTIFACT SEQADV 2GL5 HIS A 403 UNP Q8ZNH1 EXPRESSION TAG SEQADV 2GL5 HIS A 404 UNP Q8ZNH1 EXPRESSION TAG SEQADV 2GL5 HIS A 405 UNP Q8ZNH1 EXPRESSION TAG SEQADV 2GL5 HIS A 406 UNP Q8ZNH1 EXPRESSION TAG SEQADV 2GL5 HIS A 407 UNP Q8ZNH1 EXPRESSION TAG SEQADV 2GL5 HIS A 408 UNP Q8ZNH1 EXPRESSION TAG SEQADV 2GL5 MET B -1 UNP Q8ZNH1 CLONING ARTIFACT SEQADV 2GL5 SER B 0 UNP Q8ZNH1 CLONING ARTIFACT SEQADV 2GL5 LEU B 1 UNP Q8ZNH1 CLONING ARTIFACT SEQADV 2GL5 ASN B 143 UNP Q8ZNH1 ARG 143 ENGINEERED MUTATION SEQADV 2GL5 GLU B 401 UNP Q8ZNH1 CLONING ARTIFACT SEQADV 2GL5 GLY B 402 UNP Q8ZNH1 CLONING ARTIFACT SEQADV 2GL5 HIS B 403 UNP Q8ZNH1 EXPRESSION TAG SEQADV 2GL5 HIS B 404 UNP Q8ZNH1 EXPRESSION TAG SEQADV 2GL5 HIS B 405 UNP Q8ZNH1 EXPRESSION TAG SEQADV 2GL5 HIS B 406 UNP Q8ZNH1 EXPRESSION TAG SEQADV 2GL5 HIS B 407 UNP Q8ZNH1 EXPRESSION TAG SEQADV 2GL5 HIS B 408 UNP Q8ZNH1 EXPRESSION TAG SEQRES 1 A 410 MET SER LEU LYS ILE THR SER ILE GLU VAL PHE ASP CYS SEQRES 2 A 410 GLU LEU LYS LYS ARG ASP GLN THR MET SER SER TYR ASN SEQRES 3 A 410 PRO VAL LEU ILE ARG VAL ASN THR ASP SER GLY LEU SER SEQRES 4 A 410 GLY ILE GLY GLU VAL GLY LEU ALA TYR GLY ALA GLY ALA SEQRES 5 A 410 LYS ALA GLY VAL GLY ILE ILE ARG ASP LEU ALA PRO LEU SEQRES 6 A 410 ILE VAL GLY GLU ASP PRO LEU ASN ILE GLU LYS ILE TRP SEQRES 7 A 410 GLU PHE PHE PHE ARG LYS THR PHE TRP GLY MET GLY GLY SEQRES 8 A 410 GLY ASN VAL PHE TYR ALA GLY MET SER ALA ILE ASP ILE SEQRES 9 A 410 ALA LEU TRP ASP ILE LYS GLY LYS TYR LEU GLY VAL PRO SEQRES 10 A 410 VAL TYR GLN LEU LEU GLY GLY LYS THR ASN GLU LYS LEU SEQRES 11 A 410 ARG THR TYR ALA SER GLN LEU GLN PHE GLY TRP GLY ASP SEQRES 12 A 410 LYS ASN HIS ILE LEU VAL THR PRO GLU GLU TYR ALA GLU SEQRES 13 A 410 ALA ALA ARG ALA ALA LEU ASP ASP GLY TYR ASP ALA ILE SEQRES 14 A 410 LYS VAL ASP PRO LEU GLU ILE ASP ARG ASN GLY ASP ASP SEQRES 15 A 410 CYS VAL PHE GLN ASN ARG ASN ARG ASN TYR SER GLY LEU SEQRES 16 A 410 LEU LEU ALA ASP GLN LEU LYS MET GLY GLU ALA ARG ILE SEQRES 17 A 410 ALA ALA MET ARG GLU ALA MET GLY ASP ASP ALA ASP ILE SEQRES 18 A 410 ILE VAL GLU ILE HIS SER LEU LEU GLY THR ASN SER ALA SEQRES 19 A 410 ILE GLN PHE ALA LYS ALA ILE GLU LYS TYR ARG ILE PHE SEQRES 20 A 410 LEU TYR GLU GLU PRO ILE HIS PRO LEU ASN SER ASP ASN SEQRES 21 A 410 MET GLN LYS VAL SER ARG SER THR THR ILE PRO ILE ALA SEQRES 22 A 410 THR GLY GLU ARG SER TYR THR ARG TRP GLY TYR ARG GLU SEQRES 23 A 410 LEU LEU GLU LYS GLN SER ILE ALA VAL ALA GLN PRO ASP SEQRES 24 A 410 LEU CYS LEU CYS GLY GLY ILE THR GLU GLY LYS LYS ILE SEQRES 25 A 410 CYS ASP TYR ALA ASN ILE TYR ASP THR THR VAL GLN VAL SEQRES 26 A 410 HIS VAL CYS GLY GLY PRO VAL SER THR VAL ALA ALA LEU SEQRES 27 A 410 HIS MET GLU THR ALA ILE PRO ASN PHE ILE ILE HIS GLU SEQRES 28 A 410 HIS HIS THR ASN ALA MET LYS ALA SER ILE ARG GLU LEU SEQRES 29 A 410 CYS THR HIS ASP TYR GLN PRO GLU ASN GLY TYR TYR VAL SEQRES 30 A 410 ALA PRO GLU GLN PRO GLY LEU GLY GLN GLU LEU ASN ASP SEQRES 31 A 410 GLU VAL VAL LYS GLU TYR LEU ALA TYR VAL ILE LYS GLU SEQRES 32 A 410 GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 410 MET SER LEU LYS ILE THR SER ILE GLU VAL PHE ASP CYS SEQRES 2 B 410 GLU LEU LYS LYS ARG ASP GLN THR MET SER SER TYR ASN SEQRES 3 B 410 PRO VAL LEU ILE ARG VAL ASN THR ASP SER GLY LEU SER SEQRES 4 B 410 GLY ILE GLY GLU VAL GLY LEU ALA TYR GLY ALA GLY ALA SEQRES 5 B 410 LYS ALA GLY VAL GLY ILE ILE ARG ASP LEU ALA PRO LEU SEQRES 6 B 410 ILE VAL GLY GLU ASP PRO LEU ASN ILE GLU LYS ILE TRP SEQRES 7 B 410 GLU PHE PHE PHE ARG LYS THR PHE TRP GLY MET GLY GLY SEQRES 8 B 410 GLY ASN VAL PHE TYR ALA GLY MET SER ALA ILE ASP ILE SEQRES 9 B 410 ALA LEU TRP ASP ILE LYS GLY LYS TYR LEU GLY VAL PRO SEQRES 10 B 410 VAL TYR GLN LEU LEU GLY GLY LYS THR ASN GLU LYS LEU SEQRES 11 B 410 ARG THR TYR ALA SER GLN LEU GLN PHE GLY TRP GLY ASP SEQRES 12 B 410 LYS ASN HIS ILE LEU VAL THR PRO GLU GLU TYR ALA GLU SEQRES 13 B 410 ALA ALA ARG ALA ALA LEU ASP ASP GLY TYR ASP ALA ILE SEQRES 14 B 410 LYS VAL ASP PRO LEU GLU ILE ASP ARG ASN GLY ASP ASP SEQRES 15 B 410 CYS VAL PHE GLN ASN ARG ASN ARG ASN TYR SER GLY LEU SEQRES 16 B 410 LEU LEU ALA ASP GLN LEU LYS MET GLY GLU ALA ARG ILE SEQRES 17 B 410 ALA ALA MET ARG GLU ALA MET GLY ASP ASP ALA ASP ILE SEQRES 18 B 410 ILE VAL GLU ILE HIS SER LEU LEU GLY THR ASN SER ALA SEQRES 19 B 410 ILE GLN PHE ALA LYS ALA ILE GLU LYS TYR ARG ILE PHE SEQRES 20 B 410 LEU TYR GLU GLU PRO ILE HIS PRO LEU ASN SER ASP ASN SEQRES 21 B 410 MET GLN LYS VAL SER ARG SER THR THR ILE PRO ILE ALA SEQRES 22 B 410 THR GLY GLU ARG SER TYR THR ARG TRP GLY TYR ARG GLU SEQRES 23 B 410 LEU LEU GLU LYS GLN SER ILE ALA VAL ALA GLN PRO ASP SEQRES 24 B 410 LEU CYS LEU CYS GLY GLY ILE THR GLU GLY LYS LYS ILE SEQRES 25 B 410 CYS ASP TYR ALA ASN ILE TYR ASP THR THR VAL GLN VAL SEQRES 26 B 410 HIS VAL CYS GLY GLY PRO VAL SER THR VAL ALA ALA LEU SEQRES 27 B 410 HIS MET GLU THR ALA ILE PRO ASN PHE ILE ILE HIS GLU SEQRES 28 B 410 HIS HIS THR ASN ALA MET LYS ALA SER ILE ARG GLU LEU SEQRES 29 B 410 CYS THR HIS ASP TYR GLN PRO GLU ASN GLY TYR TYR VAL SEQRES 30 B 410 ALA PRO GLU GLN PRO GLY LEU GLY GLN GLU LEU ASN ASP SEQRES 31 B 410 GLU VAL VAL LYS GLU TYR LEU ALA TYR VAL ILE LYS GLU SEQRES 32 B 410 GLY HIS HIS HIS HIS HIS HIS HET MG A 699 1 HET MG B 700 1 HET GOL B 701 6 HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MG 2(MG 2+) FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *624(H2 O) HELIX 1 1 GLU A 12 ARG A 16 5 5 HELIX 2 2 ASP A 17 SER A 21 5 5 HELIX 3 3 GLY A 49 ALA A 61 1 13 HELIX 4 4 PRO A 62 ILE A 64 5 3 HELIX 5 5 ASN A 71 LYS A 82 1 12 HELIX 6 6 PHE A 84 GLY A 88 5 5 HELIX 7 7 GLY A 90 GLY A 113 1 24 HELIX 8 8 PRO A 115 LEU A 120 1 6 HELIX 9 9 LEU A 135 GLY A 138 5 4 HELIX 10 10 THR A 148 ASP A 162 1 15 HELIX 11 11 ASN A 187 GLY A 192 5 6 HELIX 12 12 LEU A 195 GLY A 214 1 20 HELIX 13 13 GLY A 228 GLU A 240 1 13 HELIX 14 14 ASN A 255 THR A 266 1 12 HELIX 15 15 ARG A 279 LYS A 288 1 10 HELIX 16 16 GLY A 302 ILE A 316 1 15 HELIX 17 17 GLY A 328 ILE A 342 1 15 HELIX 18 18 LYS A 356 GLU A 361 1 6 HELIX 19 19 ASN A 387 LYS A 392 1 6 HELIX 20 20 GLU B 12 ARG B 16 5 5 HELIX 21 21 ASP B 17 SER B 21 5 5 HELIX 22 22 GLY B 49 ALA B 61 1 13 HELIX 23 23 PRO B 62 ILE B 64 5 3 HELIX 24 24 ASN B 71 LYS B 82 1 12 HELIX 25 25 PHE B 84 GLY B 88 5 5 HELIX 26 26 GLY B 90 GLY B 113 1 24 HELIX 27 27 PRO B 115 LEU B 120 1 6 HELIX 28 28 LEU B 135 GLY B 138 5 4 HELIX 29 29 THR B 148 ASP B 162 1 15 HELIX 30 30 ASN B 187 GLY B 192 5 6 HELIX 31 31 LEU B 195 GLY B 214 1 20 HELIX 32 32 GLY B 228 GLU B 240 1 13 HELIX 33 33 LYS B 241 ARG B 243 5 3 HELIX 34 34 ASN B 255 SER B 265 1 11 HELIX 35 35 TYR B 277 LYS B 288 1 12 HELIX 36 36 GLY B 302 ILE B 316 1 15 HELIX 37 37 GLY B 328 ILE B 342 1 15 HELIX 38 38 LYS B 356 GLU B 361 1 6 HELIX 39 39 ASN B 387 LYS B 392 1 6 SHEET 1 A 4 SER A 37 VAL A 42 0 SHEET 2 A 4 VAL A 26 THR A 32 -1 N VAL A 30 O GLY A 38 SHEET 3 A 4 ILE A 3 ASP A 10 -1 N PHE A 9 O LEU A 27 SHEET 4 A 4 LEU A 395 ILE A 399 -1 O ALA A 396 N VAL A 8 SHEET 1 B 8 THR A 320 VAL A 321 0 SHEET 2 B 8 VAL A 293 ALA A 294 1 N ALA A 294 O THR A 320 SHEET 3 B 8 ILE A 270 THR A 272 1 N THR A 272 O VAL A 293 SHEET 4 B 8 ILE A 244 GLU A 248 1 N TYR A 247 O ALA A 271 SHEET 5 B 8 ASP A 218 GLU A 222 1 N VAL A 221 O GLU A 248 SHEET 6 B 8 ALA A 166 VAL A 169 1 N ILE A 167 O ILE A 220 SHEET 7 B 8 LEU A 128 SER A 133 1 N ALA A 132 O LYS A 168 SHEET 8 B 8 HIS A 348 HIS A 351 1 O HIS A 350 N SER A 133 SHEET 1 C 8 THR A 320 VAL A 321 0 SHEET 2 C 8 VAL A 293 ALA A 294 1 N ALA A 294 O THR A 320 SHEET 3 C 8 ILE A 270 THR A 272 1 N THR A 272 O VAL A 293 SHEET 4 C 8 ILE A 244 GLU A 248 1 N TYR A 247 O ALA A 271 SHEET 5 C 8 ASP A 218 GLU A 222 1 N VAL A 221 O GLU A 248 SHEET 6 C 8 ALA A 166 VAL A 169 1 N ILE A 167 O ILE A 220 SHEET 7 C 8 LEU A 128 SER A 133 1 N ALA A 132 O LYS A 168 SHEET 8 C 8 TYR A 373 TYR A 374 -1 O TYR A 374 N LEU A 128 SHEET 1 D 4 SER B 37 VAL B 42 0 SHEET 2 D 4 VAL B 26 THR B 32 -1 N VAL B 30 O GLY B 38 SHEET 3 D 4 ILE B 3 ASP B 10 -1 N PHE B 9 O LEU B 27 SHEET 4 D 4 LEU B 395 ILE B 399 -1 O ALA B 396 N VAL B 8 SHEET 1 E 8 THR B 320 VAL B 321 0 SHEET 2 E 8 VAL B 293 ALA B 294 1 N ALA B 294 O THR B 320 SHEET 3 E 8 ILE B 270 THR B 272 1 N THR B 272 O VAL B 293 SHEET 4 E 8 LEU B 246 GLU B 248 1 N TYR B 247 O ALA B 271 SHEET 5 E 8 ASP B 218 GLU B 222 1 N VAL B 221 O GLU B 248 SHEET 6 E 8 ALA B 166 VAL B 169 1 N ILE B 167 O ILE B 220 SHEET 7 E 8 LEU B 128 SER B 133 1 N ALA B 132 O LYS B 168 SHEET 8 E 8 HIS B 348 HIS B 351 1 O HIS B 348 N TYR B 131 SHEET 1 F 8 THR B 320 VAL B 321 0 SHEET 2 F 8 VAL B 293 ALA B 294 1 N ALA B 294 O THR B 320 SHEET 3 F 8 ILE B 270 THR B 272 1 N THR B 272 O VAL B 293 SHEET 4 F 8 LEU B 246 GLU B 248 1 N TYR B 247 O ALA B 271 SHEET 5 F 8 ASP B 218 GLU B 222 1 N VAL B 221 O GLU B 248 SHEET 6 F 8 ALA B 166 VAL B 169 1 N ILE B 167 O ILE B 220 SHEET 7 F 8 LEU B 128 SER B 133 1 N ALA B 132 O LYS B 168 SHEET 8 F 8 TYR B 373 TYR B 374 -1 O TYR B 374 N LEU B 128 LINK OE1 GLU A 222 MG MG A 699 1555 1555 2.18 LINK OE2 GLU A 248 MG MG A 699 1555 1555 2.03 LINK OE2 GLU A 274 MG MG A 699 1555 1555 2.09 LINK MG MG A 699 O HOH A 960 1555 1555 2.18 LINK MG MG A 699 O HOH A 961 1555 1555 2.05 LINK MG MG A 699 O HOH A 962 1555 1555 2.14 LINK OE1 GLU B 222 MG MG B 700 1555 1555 2.17 LINK OE2 GLU B 248 MG MG B 700 1555 1555 2.05 LINK OE2 GLU B 274 MG MG B 700 1555 1555 2.11 LINK MG MG B 700 O HOH B 981 1555 1555 2.10 LINK MG MG B 700 O HOH B 982 1555 1555 2.02 LINK MG MG B 700 O HOH B 983 1555 1555 2.24 SITE 1 AC1 6 GLU A 222 GLU A 248 GLU A 274 HOH A 960 SITE 2 AC1 6 HOH A 961 HOH A 962 SITE 1 AC2 6 GLU B 222 GLU B 248 GLU B 274 HOH B 981 SITE 2 AC2 6 HOH B 982 HOH B 983 SITE 1 AC3 11 LEU A 254 GLY B 89 GLY B 90 TYR B 94 SITE 2 AC3 11 TYR B 277 THR B 278 TRP B 280 GLY B 281 SITE 3 AC3 11 HOH B 711 HOH B 861 HOH B 937 CRYST1 116.972 116.972 116.095 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008549 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008549 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008614 0.00000