HEADER METAL BINDING PROTEIN 05-APR-06 2GLZ TITLE CRYSTAL STRUCTURE OF A FORMYLMETHANOFURAN DEHYDROGENASE SUBUNIT E-LIKE TITLE 2 PROTEIN (DHAF_2992) FROM DESULFITOBACTERIUM HAFNIENSE DCB-2 AT 1.45 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIMILAR TO FORMYLMETHANOFURAN DEHYDROGENASE SUBUNIT E; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFITOBACTERIUM HAFNIENSE; SOURCE 3 ORGANISM_TAXID: 272564; SOURCE 4 STRAIN: DCB-2; SOURCE 5 GENE: ZP_01368882.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 8 25-JAN-23 2GLZ 1 REMARK SEQADV LINK REVDAT 7 24-OCT-12 2GLZ 1 JRNL REVDAT 6 13-JUL-11 2GLZ 1 VERSN REVDAT 5 23-MAR-11 2GLZ 1 HEADER TITLE KEYWDS REVDAT 4 03-NOV-10 2GLZ 1 JRNL REVDAT 3 24-FEB-09 2GLZ 1 VERSN REVDAT 2 03-OCT-06 2GLZ 1 TITLE SOURCE KEYWDS JRNL REVDAT 2 2 1 REMARK REVDAT 1 18-APR-06 2GLZ 0 JRNL AUTH H.L.AXELROD,D.DAS,P.ABDUBEK,T.ASTAKHOVA,C.BAKOLITSA, JRNL AUTH 2 D.CARLTON,C.CHEN,H.J.CHIU,T.CLAYTON,M.C.DELLER,L.DUAN, JRNL AUTH 3 K.ELLROTT,C.L.FARR,J.FEUERHELM,J.C.GRANT,A.GRZECHNIK, JRNL AUTH 4 G.W.HAN,L.JAROSZEWSKI,K.K.JIN,H.E.KLOCK,M.W.KNUTH,P.KOZBIAL, JRNL AUTH 5 S.S.KRISHNA,A.KUMAR,W.W.LAM,D.MARCIANO,D.MCMULLAN, JRNL AUTH 6 M.D.MILLER,A.T.MORSE,E.NIGOGHOSSIAN,A.NOPAKUN,L.OKACH, JRNL AUTH 7 C.PUCKETT,R.REYES,N.SEFCOVIC,H.J.TIEN,C.B.TRAME, JRNL AUTH 8 H.VAN DEN BEDEM,D.WEEKES,T.WOOTEN,Q.XU,K.O.HODGSON,J.WOOLEY, JRNL AUTH 9 M.A.ELSLIGER,A.M.DEACON,A.GODZIK,S.A.LESLEY,I.A.WILSON JRNL TITL STRUCTURES OF THREE MEMBERS OF PFAM PF02663 (FMDE) JRNL TITL 2 IMPLICATED IN MICROBIAL METHANOGENESIS REVEAL A CONSERVED JRNL TITL 3 ALPHA+BETA CORE DOMAIN AND AN AUXILIARY C-TERMINAL JRNL TITL 4 TREBLE-CLEF ZINC FINGER. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 66 1335 2010 JRNL REFN ESSN 1744-3091 JRNL PMID 20944230 JRNL DOI 10.1107/S1744309110020166 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 71126 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3593 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4921 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 260 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2335 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 428 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 18.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.49000 REMARK 3 B22 (A**2) : -1.50000 REMARK 3 B33 (A**2) : -0.99000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.058 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.061 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.050 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.688 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2570 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2381 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3478 ; 1.546 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5541 ; 0.807 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 329 ; 5.829 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 115 ;38.092 ;23.565 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 436 ;12.204 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;14.776 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 388 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2834 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 509 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 502 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2431 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1216 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1477 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 305 ; 0.158 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.126 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 5 ; 0.072 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 49 ; 0.177 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 28 ; 0.126 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1590 ; 1.864 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 618 ; 0.503 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2526 ; 2.660 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1084 ; 4.323 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 940 ; 5.661 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 151 REMARK 3 ORIGIN FOR THE GROUP (A): 32.8780 11.8770 20.7120 REMARK 3 T TENSOR REMARK 3 T11: -0.2175 T22: -0.1534 REMARK 3 T33: -0.1194 T12: -0.0050 REMARK 3 T13: 0.0019 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 1.0424 L22: 1.2012 REMARK 3 L33: 1.5542 L12: -0.1940 REMARK 3 L13: -0.4747 L23: -0.1441 REMARK 3 S TENSOR REMARK 3 S11: -0.0072 S12: -0.0403 S13: 0.0882 REMARK 3 S21: -0.0099 S22: 0.0242 S23: -0.0250 REMARK 3 S31: -0.1092 S32: 0.0394 S33: -0.0170 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 151 REMARK 3 ORIGIN FOR THE GROUP (A): 34.6490 -12.2390 28.2110 REMARK 3 T TENSOR REMARK 3 T11: -0.2293 T22: -0.1484 REMARK 3 T33: -0.1306 T12: -0.0097 REMARK 3 T13: -0.0026 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 0.8938 L22: 1.6310 REMARK 3 L33: 1.6951 L12: 0.2253 REMARK 3 L13: 0.2856 L23: 0.0699 REMARK 3 S TENSOR REMARK 3 S11: -0.0429 S12: 0.0703 S13: -0.0403 REMARK 3 S21: -0.0393 S22: 0.0677 S23: -0.0395 REMARK 3 S31: 0.0651 S32: 0.0468 S33: -0.0248 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1). HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2). A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. 3). X-RAY ANOMALOUS SCATTERING MEASUREMENTS REMARK 3 INDICATE EITHER A ZINC OR A NICKEL CATION ION IS COORDINATED IN REMARK 3 AN TETRAHEDERAL COMPLEX TO THE SIDECHAINS OF HIS-15, HIS-17, CYS- REMARK 3 19, AND CYS-55. THE RELATIVE OCCUPANCIES OF THE THE METAL IONS REMARK 3 WERE ESTIMATED FROM THE RATIO OF THEIR ANOMALOUS DIFFERENCE MAP REMARK 3 PEAK HEIGHTS. THE TOTAL OCCUPANCY OF THE ZN AND NI CATIONS WAS REMARK 3 REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING OBSERVED REMARK 3 AT THIS SITE. 4). SEVERAL MOLECULES OF THE CRYOPROTECTANT, REMARK 3 ETHYLENE GLYCOL, WERE MODELED INTO THE STRUCTURE. 5). UNKNOWN REMARK 3 DIFFERENCE DENSITY, BETWEEN THE SIDECHAINS OF ASN 64 AND PHE 87 REMARK 3 ON BOTH SUBUNITS, IN THE ASYMMETRIC UNIT HAS NOT BEEN MODELED. 6) REMARK 3 . ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 4 REMARK 4 2GLZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037279. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.97905 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71200 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 29.894 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : 0.07100 REMARK 200 FOR THE DATA SET : 5.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.72900 REMARK 200 R SYM FOR SHELL (I) : 0.72900 REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL2, 20.0% PEG-3350, NO BUFFER, REMARK 280 PH 5.8, VAPOR DIFFUSION, SITTING DROP, NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.21250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.35550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.39550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.35550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.21250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.39550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -84.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 CYS A 2 REMARK 465 VAL A 152 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 CYS B 2 REMARK 465 VAL B 3 REMARK 465 VAL B 152 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 3 CG1 CG2 REMARK 470 GLU A 4 CD OE1 OE2 REMARK 470 ASP A 43 CG OD1 OD2 REMARK 470 HIS A 111 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 113 CB CG OD1 OD2 REMARK 470 ARG A 117 CD NE CZ NH1 NH2 REMARK 470 GLU A 118 CD OE1 OE2 REMARK 470 ARG A 119 CZ NH1 NH2 REMARK 470 ILE A 151 CG1 CG2 CD1 REMARK 470 GLU B 4 CG CD OE1 OE2 REMARK 470 ASP B 43 OD1 OD2 REMARK 470 HIS B 111 CG ND1 CD2 CE1 NE2 REMARK 470 ASP B 113 CB CG OD1 OD2 REMARK 470 ARG B 117 CD NE CZ NH1 NH2 REMARK 470 ILE B 151 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 56 -37.51 -38.16 REMARK 500 ASP A 113 54.92 -109.16 REMARK 500 ASP B 113 60.84 -114.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 15 NE2 REMARK 620 2 HIS A 17 NE2 95.9 REMARK 620 3 CYS A 19 SG 116.7 109.3 REMARK 620 4 CYS A 55 SG 96.8 129.7 107.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 201 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 15 NE2 REMARK 620 2 HIS A 17 NE2 87.4 REMARK 620 3 CYS A 19 SG 96.6 94.0 REMARK 620 4 CYS A 55 SG 102.2 155.2 107.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 15 NE2 REMARK 620 2 HIS B 17 NE2 91.5 REMARK 620 3 CYS B 19 SG 117.2 106.7 REMARK 620 4 CYS B 55 SG 98.5 127.7 113.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 201 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 15 NE2 REMARK 620 2 HIS B 17 NE2 100.3 REMARK 620 3 CYS B 19 SG 99.7 108.4 REMARK 620 4 CYS B 55 SG 90.9 149.2 97.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 207 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 361000 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG: REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV REMARK 999 PROTEASE LEAVING ONLY GLYCINE (0) FOLLOWED BY THE REMARK 999 TARGET SEQUENCE. DBREF 2GLZ A 1 152 GB 68208641 ZP_00560742 1 152 DBREF 2GLZ B 1 152 GB 68208641 ZP_00560742 1 152 SEQADV 2GLZ GLY A 0 GB 68208641 EXPRESSION TAG SEQADV 2GLZ MSE A 1 GB 68208641 MET 1 MODIFIED RESIDUE SEQADV 2GLZ MSE A 36 GB 68208641 MET 36 MODIFIED RESIDUE SEQADV 2GLZ MSE A 82 GB 68208641 MET 82 MODIFIED RESIDUE SEQADV 2GLZ GLY B 0 GB 68208641 EXPRESSION TAG SEQADV 2GLZ MSE B 1 GB 68208641 MET 1 MODIFIED RESIDUE SEQADV 2GLZ MSE B 36 GB 68208641 MET 36 MODIFIED RESIDUE SEQADV 2GLZ MSE B 82 GB 68208641 MET 82 MODIFIED RESIDUE SEQRES 1 A 153 GLY MSE CYS VAL GLU LYS THR PRO TRP GLU LEU VAL ILE SEQRES 2 A 153 ASP PHE HIS GLY HIS THR CYS PRO ASP ILE ALA LEU GLY SEQRES 3 A 153 TYR ARG ILE ALA GLN LEU ALA GLN ARG GLU MSE GLY ILE SEQRES 4 A 153 ARG PRO ALA PRO ASP SER GLU CYS LEU VAL LYS ALA TYR SEQRES 5 A 153 THR GLN SER CYS ALA LEU ASP ALA ILE GLN VAL LEU ASN SEQRES 6 A 153 LYS ALA THR ILE GLY ARG HIS ALA LEU ILE ILE GLU GLU SEQRES 7 A 153 THR HIS ARG TYR MSE TYR GLN PHE HIS PHE THR GLY THR SEQRES 8 A 153 GLN ASP ILE HIS GLN PHE THR VAL SER PRO ALA VAL LEU SEQRES 9 A 153 ASP HIS LEU GLU THR LEU ARG HIS PRO ASP LEU SER PRO SEQRES 10 A 153 ARG GLU ARG GLN ASN LYS VAL LEU GLU GLY VAL GLN TYR SEQRES 11 A 153 VAL LEU THR LEU GLU GLU SER ALA PHE CYS HIS TYR ASP SEQRES 12 A 153 LYS ILE PRO GLY GLN LEU SER LYS ILE VAL SEQRES 1 B 153 GLY MSE CYS VAL GLU LYS THR PRO TRP GLU LEU VAL ILE SEQRES 2 B 153 ASP PHE HIS GLY HIS THR CYS PRO ASP ILE ALA LEU GLY SEQRES 3 B 153 TYR ARG ILE ALA GLN LEU ALA GLN ARG GLU MSE GLY ILE SEQRES 4 B 153 ARG PRO ALA PRO ASP SER GLU CYS LEU VAL LYS ALA TYR SEQRES 5 B 153 THR GLN SER CYS ALA LEU ASP ALA ILE GLN VAL LEU ASN SEQRES 6 B 153 LYS ALA THR ILE GLY ARG HIS ALA LEU ILE ILE GLU GLU SEQRES 7 B 153 THR HIS ARG TYR MSE TYR GLN PHE HIS PHE THR GLY THR SEQRES 8 B 153 GLN ASP ILE HIS GLN PHE THR VAL SER PRO ALA VAL LEU SEQRES 9 B 153 ASP HIS LEU GLU THR LEU ARG HIS PRO ASP LEU SER PRO SEQRES 10 B 153 ARG GLU ARG GLN ASN LYS VAL LEU GLU GLY VAL GLN TYR SEQRES 11 B 153 VAL LEU THR LEU GLU GLU SER ALA PHE CYS HIS TYR ASP SEQRES 12 B 153 LYS ILE PRO GLY GLN LEU SER LYS ILE VAL MODRES 2GLZ MSE A 36 MET SELENOMETHIONINE MODRES 2GLZ MSE A 82 MET SELENOMETHIONINE MODRES 2GLZ MSE B 36 MET SELENOMETHIONINE MODRES 2GLZ MSE B 82 MET SELENOMETHIONINE HET MSE A 36 8 HET MSE A 82 13 HET MSE B 36 8 HET MSE B 82 13 HET ZN A 200 1 HET NI A 201 1 HET EDO A 202 4 HET EDO A 203 4 HET EDO A 204 4 HET EDO A 205 4 HET EDO A 206 4 HET EDO A 207 4 HET ZN B 200 1 HET NI B 201 1 HET EDO B 202 4 HET EDO B 203 4 HET EDO B 204 4 HET EDO B 205 4 HET EDO B 206 4 HET EDO B 207 4 HET EDO B 208 4 HET EDO B 209 4 HET EDO B 210 4 HET EDO B 211 4 HET EDO B 212 4 HET EDO B 213 4 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM NI NICKEL (II) ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 ZN 2(ZN 2+) FORMUL 4 NI 2(NI 2+) FORMUL 5 EDO 18(C2 H6 O2) FORMUL 25 HOH *428(H2 O) HELIX 1 1 THR A 6 GLY A 16 1 11 HELIX 2 2 CYS A 19 GLY A 37 1 19 HELIX 3 3 ALA A 56 ASN A 64 1 9 HELIX 4 4 SER A 99 LEU A 109 1 11 HELIX 5 5 SER A 115 LEU A 133 1 19 HELIX 6 6 GLU A 134 PHE A 138 1 5 HELIX 7 7 THR B 6 GLY B 16 1 11 HELIX 8 8 CYS B 19 GLY B 37 1 19 HELIX 9 9 CYS B 55 ASN B 64 1 10 HELIX 10 10 SER B 99 LEU B 109 1 11 HELIX 11 11 SER B 115 LEU B 133 1 19 HELIX 12 12 GLU B 134 PHE B 138 1 5 SHEET 1 A 5 LEU A 73 ILE A 75 0 SHEET 2 A 5 CYS A 46 ALA A 50 1 N ALA A 50 O ILE A 74 SHEET 3 A 5 MSE A 82 PHE A 87 -1 O HIS A 86 N LEU A 47 SHEET 4 A 5 ASP A 92 VAL A 98 -1 O PHE A 96 N TYR A 83 SHEET 5 A 5 CYS A 139 PRO A 145 -1 O ASP A 142 N GLN A 95 SHEET 1 B 5 LEU B 73 ILE B 75 0 SHEET 2 B 5 CYS B 46 ALA B 50 1 N VAL B 48 O ILE B 74 SHEET 3 B 5 MSE B 82 PHE B 87 -1 O HIS B 86 N LEU B 47 SHEET 4 B 5 ASP B 92 VAL B 98 -1 O PHE B 96 N TYR B 83 SHEET 5 B 5 CYS B 139 PRO B 145 -1 O ILE B 144 N ILE B 93 LINK C GLU A 35 N MSE A 36 1555 1555 1.33 LINK C MSE A 36 N GLY A 37 1555 1555 1.33 LINK C TYR A 81 N MSE A 82 1555 1555 1.33 LINK C MSE A 82 N TYR A 83 1555 1555 1.33 LINK C AGLU B 35 N MSE B 36 1555 1555 1.32 LINK C BGLU B 35 N MSE B 36 1555 1555 1.33 LINK C MSE B 36 N GLY B 37 1555 1555 1.33 LINK C TYR B 81 N MSE B 82 1555 1555 1.33 LINK C MSE B 82 N TYR B 83 1555 1555 1.33 LINK NE2 HIS A 15 ZN A ZN A 200 1555 1555 2.09 LINK NE2 HIS A 15 NI B NI A 201 1555 1555 2.31 LINK NE2 HIS A 17 ZN A ZN A 200 1555 1555 1.98 LINK NE2 HIS A 17 NI B NI A 201 1555 1555 2.05 LINK SG CYS A 19 ZN A ZN A 200 1555 1555 2.27 LINK SG CYS A 19 NI B NI A 201 1555 1555 2.66 LINK SG CYS A 55 ZN A ZN A 200 1555 1555 2.42 LINK SG CYS A 55 NI B NI A 201 1555 1555 2.02 LINK NE2 HIS B 15 ZN A ZN B 200 1555 1555 2.09 LINK NE2 HIS B 15 NI B NI B 201 1555 1555 2.23 LINK NE2 HIS B 17 ZN A ZN B 200 1555 1555 2.24 LINK NE2 HIS B 17 NI B NI B 201 1555 1555 1.79 LINK SG CYS B 19 ZN A ZN B 200 1555 1555 2.25 LINK SG CYS B 19 NI B NI B 201 1555 1555 2.61 LINK SG CYS B 55 ZN A ZN B 200 1555 1555 2.26 LINK SG CYS B 55 NI B NI B 201 1555 1555 2.39 SITE 1 AC1 4 HIS A 15 HIS A 17 CYS A 19 CYS A 55 SITE 1 AC2 4 HIS A 15 HIS A 17 CYS A 19 CYS A 55 SITE 1 AC3 4 HIS B 15 HIS B 17 CYS B 19 CYS B 55 SITE 1 AC4 4 HIS B 15 HIS B 17 CYS B 19 CYS B 55 SITE 1 AC5 5 HIS A 17 GLU B 45 ARG B 70 LYS B 150 SITE 2 AC5 5 HOH B 226 SITE 1 AC6 4 CYS A 19 PRO A 20 HOH A 313 HOH A 314 SITE 1 AC7 5 TRP A 8 THR A 18 HOH A 293 HOH A 325 SITE 2 AC7 5 GLN B 128 SITE 1 AC8 5 ARG B 34 GLU B 35 GLU B 135 TYR B 141 SITE 2 AC8 5 HOH B 243 SITE 1 AC9 6 ASP B 21 LEU B 24 TYR B 81 LEU B 106 SITE 2 AC9 6 ARG B 110 HOH B 335 SITE 1 BC1 3 LYS A 49 ILE A 75 GLU A 76 SITE 1 BC2 7 ILE A 38 ARG A 39 PRO A 40 EDO A 207 SITE 2 BC2 7 HOH A 361 GLN B 147 HOH B 397 SITE 1 BC3 5 ILE A 38 HOH A 407 EDO B 208 EDO B 209 SITE 2 BC3 5 HOH B 397 SITE 1 BC4 6 GLY B 146 GLN B 147 EDO B 209 HOH B 292 SITE 2 BC4 6 HOH B 397 HOH B 415 SITE 1 BC5 6 ILE A 38 EDO B 206 EDO B 209 HOH B 248 SITE 2 BC5 6 HOH B 277 HOH B 337 SITE 1 BC6 5 PRO B 145 GLY B 146 EDO B 206 EDO B 207 SITE 2 BC6 5 EDO B 208 SITE 1 BC7 2 SER B 136 HOH B 235 SITE 1 BC8 5 ARG A 70 LYS A 150 HOH A 236 HIS B 17 SITE 2 BC8 5 CYS B 55 SITE 1 BC9 5 TYR B 129 LEU B 133 HOH B 262 HOH B 280 SITE 2 BC9 5 HOH B 423 SITE 1 CC1 3 HOH A 237 THR B 88 GLY B 89 SITE 1 CC2 3 ASN B 121 GLU B 125 HOH B 411 SITE 1 CC3 2 ASP A 142 LYS A 143 SITE 1 CC4 6 ARG A 39 PRO A 40 ALA A 41 PRO A 42 SITE 2 CC4 6 HOH A 307 EDO B 205 CRYST1 46.425 84.791 100.711 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021540 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011790 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009930 0.00000