HEADER PHOTOSYNTHESIS 07-APR-06 2GMR TITLE PHOTOSYNTHETIC REACTION CENTER MUTANT FROM RHODOBACTER SPHAEROIDES TITLE 2 WITH ASP L210 REPLACED WITH ASN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOTOSYNTHETIC REACTION CENTER PROTEIN L CHAIN; COMPND 3 CHAIN: L; COMPND 4 SYNONYM: PHOTOSYNTHETIC REACTION CENTER L SUBUNIT; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PHOTOSYNTHETIC REACTION CENTER PROTEIN M CHAIN; COMPND 9 CHAIN: M; COMPND 10 SYNONYM: PHOTOSYNTHETIC REACTION CENTER M SUBUNIT; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: PHOTOSYNTHETIC REACTION CENTER PROTEIN H CHAIN; COMPND 14 CHAIN: H; COMPND 15 SYNONYM: PHOTOSYNTHETIC REACTION CENTER H SUBUNIT; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOBACTER SPHAEROIDES; SOURCE 3 ORGANISM_TAXID: 1063; SOURCE 4 GENE: PUFL; SOURCE 5 EXPRESSION_SYSTEM: RHODOBACTER SPHAEROIDES; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 1063; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: MBBB L210DN; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: RHODOBACTER SPHAEROIDES; SOURCE 10 ORGANISM_TAXID: 1063; SOURCE 11 GENE: PUFM; SOURCE 12 EXPRESSION_SYSTEM: RHODOBACTER SPHAEROIDES; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 1063; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: MBBB L210DN; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: RHODOBACTER SPHAEROIDES; SOURCE 17 ORGANISM_TAXID: 1063; SOURCE 18 GENE: PUHA; SOURCE 19 EXPRESSION_SYSTEM: RHODOBACTER SPHAEROIDES; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 1063; SOURCE 21 EXPRESSION_SYSTEM_STRAIN: MBBB L210DN KEYWDS PHOTOSYNTHETIC REACTION CENTER, INTEGRAL MEMBRANE PROTEIN, ELECTRON KEYWDS 2 TRANSPORT, PROTON TRANSFER, L210DN, MUTANT, PHOTOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR J.M.STACHNIK,S.HERMES,K.GERWERT,E.HOFMANN REVDAT 6 30-AUG-23 2GMR 1 REMARK REVDAT 5 20-OCT-21 2GMR 1 REMARK SEQADV LINK REVDAT 4 24-JAN-18 2GMR 1 AUTHOR REMARK REVDAT 3 13-JUL-11 2GMR 1 VERSN REVDAT 2 24-FEB-09 2GMR 1 VERSN REVDAT 1 21-NOV-06 2GMR 0 JRNL AUTH S.HERMES,J.M.STACHNIK,D.ONIDAS,A.REMY,E.HOFMANN,K.GERWERT JRNL TITL PROTON UPTAKE IN THE REACTION CENTER MUTANT L210DN FROM JRNL TITL 2 RHODOBACTER SPHAEROIDES VIA PROTONATED WATER MOLECULES. JRNL REF BIOCHEMISTRY V. 45 13741 2006 JRNL REFN ISSN 0006-2960 JRNL PMID 17105193 JRNL DOI 10.1021/BI060742Q REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MLF REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 50281 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2514 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6478 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 628 REMARK 3 SOLVENT ATOMS : 180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -9.86000 REMARK 3 B22 (A**2) : 25.46000 REMARK 3 B33 (A**2) : -15.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM SIGMAA (A) : 0.40 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.47 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 3.890 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.150 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.890 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.610 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.360 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.31 REMARK 3 BSOL : 53.33 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : PAR_JS12.RCV REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : TOP_JS19.RCV REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GMR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037305. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-SEP-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50281 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 38.433 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.4900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.33400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.350 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1AIG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 4000, 100MM TRIS-CL, 750MM REMARK 280 NACL, 3% 1,2,3-HEPTANETRIOLE, 0.12% LDAO, PH 8.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 301.0K, PH 8.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.42500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.82000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 67.36000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.82000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.42500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 67.36000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS A TRIMER REMARK 300 CHAINS L, M, H REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 34810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -239.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, M, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY L 281 REMARK 465 ALA M 1 REMARK 465 GLU M 2 REMARK 465 TYR M 3 REMARK 465 HIS M 301 REMARK 465 GLY M 302 REMARK 465 MET M 303 REMARK 465 ALA M 304 REMARK 465 PRO M 305 REMARK 465 LEU M 306 REMARK 465 ASN M 307 REMARK 465 MET H 1 REMARK 465 VAL H 2 REMARK 465 GLY H 3 REMARK 465 VAL H 4 REMARK 465 THR H 5 REMARK 465 ALA H 6 REMARK 465 PHE H 7 REMARK 465 GLY H 8 REMARK 465 ASN H 9 REMARK 465 PHE H 10 REMARK 465 TYR H 259 REMARK 465 ALA H 260 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER M 190 O GLY M 194 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER L 4 -13.66 -49.40 REMARK 500 VAL L 31 -78.36 -98.93 REMARK 500 SER L 65 115.49 -163.87 REMARK 500 LEU L 80 -23.22 -39.36 REMARK 500 LEU L 133 -68.66 -122.34 REMARK 500 ASN M 5 31.41 -145.15 REMARK 500 PRO M 15 139.95 -39.98 REMARK 500 GLU M 22 -133.55 47.22 REMARK 500 LEU M 26 -19.61 -48.22 REMARK 500 SER M 30 -166.22 -79.79 REMARK 500 TRP M 80 17.82 52.22 REMARK 500 GLU M 100 -31.53 -39.66 REMARK 500 PHE M 162 -71.91 -127.43 REMARK 500 ASP M 240 81.39 -154.65 REMARK 500 ARG M 241 125.09 -36.07 REMARK 500 GLU H 45 -15.96 -48.25 REMARK 500 PRO H 61 156.50 -45.00 REMARK 500 GLU H 79 114.75 -35.96 REMARK 500 ASP H 82 -79.02 71.99 REMARK 500 PRO H 111 0.06 -67.19 REMARK 500 ASP H 119 50.07 -90.11 REMARK 500 ASP H 166 162.38 173.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 U10 L 306 REMARK 615 U10 M 311 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BCL L 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS L 153 NE2 REMARK 620 2 BCL L 304 NA 94.4 REMARK 620 3 BCL L 304 NB 105.3 89.9 REMARK 620 4 BCL L 304 NC 92.0 172.6 91.8 REMARK 620 5 BCL L 304 ND 87.4 88.9 167.2 87.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BCL L 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS L 173 NE2 REMARK 620 2 BCL L 302 NA 86.1 REMARK 620 3 BCL L 302 NB 86.7 89.8 REMARK 620 4 BCL L 302 NC 101.0 172.7 92.1 REMARK 620 5 BCL L 302 ND 98.9 89.4 174.3 88.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 M 308 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS L 190 NE2 REMARK 620 2 HIS L 230 NE2 94.4 REMARK 620 3 HIS M 219 NE2 122.6 85.3 REMARK 620 4 GLU M 234 OE1 93.3 84.6 143.3 REMARK 620 5 GLU M 234 OE2 149.1 90.3 88.1 56.8 REMARK 620 6 HIS M 266 NE2 88.4 168.1 103.0 83.6 81.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BCL L 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS M 182 NE2 REMARK 620 2 BCL L 301 NA 91.0 REMARK 620 3 BCL L 301 NB 101.4 88.5 REMARK 620 4 BCL L 301 NC 97.4 171.5 91.6 REMARK 620 5 BCL L 301 ND 91.4 90.2 167.1 87.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BCL M 309 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS M 202 NE2 REMARK 620 2 BCL M 309 NA 99.8 REMARK 620 3 BCL M 309 NB 94.5 88.6 REMARK 620 4 BCL M 309 NC 93.4 166.8 90.8 REMARK 620 5 BCL M 309 ND 97.9 89.9 167.6 87.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 M 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCL L 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCL L 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCL M 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCL L 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BPH M 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BPH L 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE U10 M 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE U10 L 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SPN M 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA M 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA M 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA L 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA H 261 DBREF 2GMR L 1 281 UNP Q3J1A5 RCEL_RHOS4 1 281 DBREF 2GMR M 1 307 UNP P0C0Y9 RCEM_RHOSH 1 307 DBREF 2GMR H 1 260 UNP P0C0Y7 RCEH_RHOSH 1 260 SEQADV 2GMR ASN L 210 UNP Q3J1A5 ASP 210 ENGINEERED MUTATION SEQRES 1 L 281 ALA LEU LEU SER PHE GLU ARG LYS TYR ARG VAL PRO GLY SEQRES 2 L 281 GLY THR LEU VAL GLY GLY ASN LEU PHE ASP PHE TRP VAL SEQRES 3 L 281 GLY PRO PHE TYR VAL GLY PHE PHE GLY VAL ALA THR PHE SEQRES 4 L 281 PHE PHE ALA ALA LEU GLY ILE ILE LEU ILE ALA TRP SER SEQRES 5 L 281 ALA VAL LEU GLN GLY THR TRP ASN PRO GLN LEU ILE SER SEQRES 6 L 281 VAL TYR PRO PRO ALA LEU GLU TYR GLY LEU GLY GLY ALA SEQRES 7 L 281 PRO LEU ALA LYS GLY GLY LEU TRP GLN ILE ILE THR ILE SEQRES 8 L 281 CYS ALA THR GLY ALA PHE VAL SER TRP ALA LEU ARG GLU SEQRES 9 L 281 VAL GLU ILE CYS ARG LYS LEU GLY ILE GLY TYR HIS ILE SEQRES 10 L 281 PRO PHE ALA PHE ALA PHE ALA ILE LEU ALA TYR LEU THR SEQRES 11 L 281 LEU VAL LEU PHE ARG PRO VAL MET MET GLY ALA TRP GLY SEQRES 12 L 281 TYR ALA PHE PRO TYR GLY ILE TRP THR HIS LEU ASP TRP SEQRES 13 L 281 VAL SER ASN THR GLY TYR THR TYR GLY ASN PHE HIS TYR SEQRES 14 L 281 ASN PRO ALA HIS MET ILE ALA ILE SER PHE PHE PHE THR SEQRES 15 L 281 ASN ALA LEU ALA LEU ALA LEU HIS GLY ALA LEU VAL LEU SEQRES 16 L 281 SER ALA ALA ASN PRO GLU LYS GLY LYS GLU MET ARG THR SEQRES 17 L 281 PRO ASN HIS GLU ASP THR PHE PHE ARG ASP LEU VAL GLY SEQRES 18 L 281 TYR SER ILE GLY THR LEU GLY ILE HIS ARG LEU GLY LEU SEQRES 19 L 281 LEU LEU SER LEU SER ALA VAL PHE PHE SER ALA LEU CYS SEQRES 20 L 281 MET ILE ILE THR GLY THR ILE TRP PHE ASP GLN TRP VAL SEQRES 21 L 281 ASP TRP TRP GLN TRP TRP VAL LYS LEU PRO TRP TRP ALA SEQRES 22 L 281 ASN ILE PRO GLY GLY ILE ASN GLY SEQRES 1 M 307 ALA GLU TYR GLN ASN ILE PHE SER GLN VAL GLN VAL ARG SEQRES 2 M 307 GLY PRO ALA ASP LEU GLY MET THR GLU ASP VAL ASN LEU SEQRES 3 M 307 ALA ASN ARG SER GLY VAL GLY PRO PHE SER THR LEU LEU SEQRES 4 M 307 GLY TRP PHE GLY ASN ALA GLN LEU GLY PRO ILE TYR LEU SEQRES 5 M 307 GLY SER LEU GLY VAL LEU SER LEU PHE SER GLY LEU MET SEQRES 6 M 307 TRP PHE PHE THR ILE GLY ILE TRP PHE TRP TYR GLN ALA SEQRES 7 M 307 GLY TRP ASN PRO ALA VAL PHE LEU ARG ASP LEU PHE PHE SEQRES 8 M 307 PHE SER LEU GLU PRO PRO ALA PRO GLU TYR GLY LEU SER SEQRES 9 M 307 PHE ALA ALA PRO LEU LYS GLU GLY GLY LEU TRP LEU ILE SEQRES 10 M 307 ALA SER PHE PHE MET PHE VAL ALA VAL TRP SER TRP TRP SEQRES 11 M 307 GLY ARG THR TYR LEU ARG ALA GLN ALA LEU GLY MET GLY SEQRES 12 M 307 LYS HIS THR ALA TRP ALA PHE LEU SER ALA ILE TRP LEU SEQRES 13 M 307 TRP MET VAL LEU GLY PHE ILE ARG PRO ILE LEU MET GLY SEQRES 14 M 307 SER TRP SER GLU ALA VAL PRO TYR GLY ILE PHE SER HIS SEQRES 15 M 307 LEU ASP TRP THR ASN ASN PHE SER LEU VAL HIS GLY ASN SEQRES 16 M 307 LEU PHE TYR ASN PRO PHE HIS GLY LEU SER ILE ALA PHE SEQRES 17 M 307 LEU TYR GLY SER ALA LEU LEU PHE ALA MET HIS GLY ALA SEQRES 18 M 307 THR ILE LEU ALA VAL SER ARG PHE GLY GLY GLU ARG GLU SEQRES 19 M 307 LEU GLU GLN ILE ALA ASP ARG GLY THR ALA ALA GLU ARG SEQRES 20 M 307 ALA ALA LEU PHE TRP ARG TRP THR MET GLY PHE ASN ALA SEQRES 21 M 307 THR MET GLU GLY ILE HIS ARG TRP ALA ILE TRP MET ALA SEQRES 22 M 307 VAL LEU VAL THR LEU THR GLY GLY ILE GLY ILE LEU LEU SEQRES 23 M 307 SER GLY THR VAL VAL ASP ASN TRP TYR VAL TRP GLY GLN SEQRES 24 M 307 ASN HIS GLY MET ALA PRO LEU ASN SEQRES 1 H 260 MET VAL GLY VAL THR ALA PHE GLY ASN PHE ASP LEU ALA SEQRES 2 H 260 SER LEU ALA ILE TYR SER PHE TRP ILE PHE LEU ALA GLY SEQRES 3 H 260 LEU ILE TYR TYR LEU GLN THR GLU ASN MET ARG GLU GLY SEQRES 4 H 260 TYR PRO LEU GLU ASN GLU ASP GLY THR PRO ALA ALA ASN SEQRES 5 H 260 GLN GLY PRO PHE PRO LEU PRO LYS PRO LYS THR PHE ILE SEQRES 6 H 260 LEU PRO HIS GLY ARG GLY THR LEU THR VAL PRO GLY PRO SEQRES 7 H 260 GLU SER GLU ASP ARG PRO ILE ALA LEU ALA ARG THR ALA SEQRES 8 H 260 VAL SER GLU GLY PHE PRO HIS ALA PRO THR GLY ASP PRO SEQRES 9 H 260 MET LYS ASP GLY VAL GLY PRO ALA SER TRP VAL ALA ARG SEQRES 10 H 260 ARG ASP LEU PRO GLU LEU ASP GLY HIS GLY HIS ASN LYS SEQRES 11 H 260 ILE LYS PRO MET LYS ALA ALA ALA GLY PHE HIS VAL SER SEQRES 12 H 260 ALA GLY LYS ASN PRO ILE GLY LEU PRO VAL ARG GLY CYS SEQRES 13 H 260 ASP LEU GLU ILE ALA GLY LYS VAL VAL ASP ILE TRP VAL SEQRES 14 H 260 ASP ILE PRO GLU GLN MET ALA ARG PHE LEU GLU VAL GLU SEQRES 15 H 260 LEU LYS ASP GLY SER THR ARG LEU LEU PRO MET GLN MET SEQRES 16 H 260 VAL LYS VAL GLN SER ASN ARG VAL HIS VAL ASN ALA LEU SEQRES 17 H 260 SER SER ASP LEU PHE ALA GLY ILE PRO THR ILE LYS SER SEQRES 18 H 260 PRO THR GLU VAL THR LEU LEU GLU GLU ASP LYS ILE CYS SEQRES 19 H 260 GLY TYR VAL ALA GLY GLY LEU MET TYR ALA ALA PRO LYS SEQRES 20 H 260 ARG LYS SER VAL VAL ALA ALA MET LEU ALA GLU TYR ALA HET BCL L 301 66 HET BCL L 302 66 HET BCL L 304 66 HET BPH L 305 65 HET U10 L 306 63 HET LDA L 307 16 HET FE2 M 308 1 HET BCL M 309 66 HET BPH M 310 65 HET U10 M 311 63 HET SPN M 312 43 HET LDA M 313 16 HET LDA M 314 16 HET LDA H 261 16 HETNAM BCL BACTERIOCHLOROPHYLL A HETNAM BPH BACTERIOPHEOPHYTIN A HETNAM U10 UBIQUINONE-10 HETNAM LDA LAURYL DIMETHYLAMINE-N-OXIDE HETNAM FE2 FE (II) ION HETNAM SPN SPEROIDENONE HETSYN U10 COENZYME Q10 FORMUL 4 BCL 4(C55 H74 MG N4 O6) FORMUL 7 BPH 2(C55 H76 N4 O6) FORMUL 8 U10 2(C59 H90 O4) FORMUL 9 LDA 4(C14 H31 N O) FORMUL 10 FE2 FE 2+ FORMUL 14 SPN C41 H70 O2 FORMUL 18 HOH *180(H2 O) HELIX 1 1 GLU L 6 ARG L 10 5 5 HELIX 2 2 VAL L 31 GLY L 57 1 27 HELIX 3 3 ALA L 70 GLY L 74 5 5 HELIX 4 4 GLY L 83 GLY L 112 1 30 HELIX 5 5 TYR L 115 LEU L 133 1 19 HELIX 6 6 LEU L 133 MET L 139 1 7 HELIX 7 7 GLY L 140 ALA L 145 5 6 HELIX 8 8 TRP L 151 THR L 163 1 13 HELIX 9 9 TYR L 164 GLY L 165 5 2 HELIX 10 10 ASN L 166 TYR L 169 5 4 HELIX 11 11 ASN L 170 ASN L 199 1 30 HELIX 12 12 THR L 208 GLY L 221 1 14 HELIX 13 13 GLY L 225 ILE L 250 1 26 HELIX 14 14 GLN L 258 TRP L 262 5 5 HELIX 15 15 TRP L 263 LYS L 268 1 6 HELIX 16 16 ASN M 25 ARG M 29 5 5 HELIX 17 17 LEU M 38 PHE M 42 5 5 HELIX 18 18 GLY M 53 GLN M 77 1 25 HELIX 19 19 ASN M 81 ASP M 88 1 8 HELIX 20 20 ALA M 98 GLY M 102 5 5 HELIX 21 21 PRO M 108 GLU M 111 5 4 HELIX 22 22 GLY M 112 GLY M 141 1 30 HELIX 23 23 LYS M 144 PHE M 162 1 19 HELIX 24 24 PHE M 162 MET M 168 1 7 HELIX 25 25 SER M 170 ALA M 174 5 5 HELIX 26 26 GLY M 178 HIS M 193 1 16 HELIX 27 27 ASN M 195 TYR M 198 5 4 HELIX 28 28 ASN M 199 VAL M 226 1 28 HELIX 29 29 SER M 227 GLY M 230 5 4 HELIX 30 30 ARG M 233 ASP M 240 1 8 HELIX 31 31 GLY M 242 GLY M 257 1 16 HELIX 32 32 GLU M 263 LEU M 286 1 24 HELIX 33 33 ASN M 293 ASN M 300 1 8 HELIX 34 34 ASP H 11 ASN H 35 1 25 HELIX 35 35 ASP H 103 GLY H 108 1 6 HELIX 36 36 VAL H 109 SER H 113 5 5 HELIX 37 37 LYS H 135 ALA H 137 5 3 HELIX 38 38 GLN H 194 VAL H 196 5 3 HELIX 39 39 SER H 209 PHE H 213 5 5 HELIX 40 40 THR H 226 GLY H 239 1 14 HELIX 41 41 GLY H 239 ALA H 244 1 6 HELIX 42 42 ALA H 245 ARG H 248 5 4 HELIX 43 43 SER H 250 LEU H 256 1 7 SHEET 1 A 2 TRP L 25 VAL L 26 0 SHEET 2 A 2 PHE L 29 TYR L 30 -1 O PHE L 29 N VAL L 26 SHEET 1 B 2 GLN M 11 ARG M 13 0 SHEET 2 B 2 HIS H 141 ALA H 144 -1 O HIS H 141 N ARG M 13 SHEET 1 C 2 LYS H 62 ILE H 65 0 SHEET 2 C 2 THR H 72 VAL H 75 -1 O LEU H 73 N PHE H 64 SHEET 1 D 2 LEU H 87 ARG H 89 0 SHEET 2 D 2 HIS H 98 PRO H 100 -1 O ALA H 99 N ALA H 88 SHEET 1 E 4 ILE H 131 PRO H 133 0 SHEET 2 E 4 ILE H 160 ASP H 170 -1 O VAL H 169 N LYS H 132 SHEET 3 E 4 MET H 175 GLU H 182 -1 O MET H 175 N ASP H 170 SHEET 4 E 4 THR H 188 PRO H 192 -1 O ARG H 189 N VAL H 181 SHEET 1 F 5 ILE H 131 PRO H 133 0 SHEET 2 F 5 ILE H 160 ASP H 170 -1 O VAL H 169 N LYS H 132 SHEET 3 F 5 PRO H 152 ARG H 154 -1 N VAL H 153 O GLY H 162 SHEET 4 F 5 VAL H 203 HIS H 204 1 O VAL H 203 N ARG H 154 SHEET 5 F 5 LYS H 197 VAL H 198 -1 N LYS H 197 O HIS H 204 LINK NE2 HIS L 153 MG BCL L 304 1555 1555 2.47 LINK NE2 HIS L 173 MG BCL L 302 1555 1555 2.48 LINK NE2 HIS L 190 FE FE2 M 308 1555 1555 2.08 LINK NE2 HIS L 230 FE FE2 M 308 1555 1555 2.30 LINK MG BCL L 301 NE2 HIS M 182 1555 1555 2.50 LINK NE2 HIS M 202 MG BCL M 309 1555 1555 2.49 LINK NE2 HIS M 219 FE FE2 M 308 1555 1555 2.11 LINK OE1 GLU M 234 FE FE2 M 308 1555 1555 2.38 LINK OE2 GLU M 234 FE FE2 M 308 1555 1555 2.25 LINK NE2 HIS M 266 FE FE2 M 308 1555 1555 2.22 CISPEP 1 GLY M 48 PRO M 49 0 -0.02 CISPEP 2 TYR H 40 PRO H 41 0 -0.21 CISPEP 3 VAL H 75 PRO H 76 0 -0.02 SITE 1 AC1 5 HIS L 190 HIS L 230 HIS M 219 GLU M 234 SITE 2 AC1 5 HIS M 266 SITE 1 AC2 16 HIS L 168 MET L 174 ILE L 177 SER L 178 SITE 2 AC2 16 THR L 182 LEU L 185 BCL L 302 HOH L 330 SITE 3 AC2 16 TRP M 66 ILE M 179 HIS M 182 LEU M 183 SITE 4 AC2 16 THR M 186 BCL M 309 BPH M 310 SPN M 312 SITE 1 AC3 24 PHE L 97 ALA L 124 ILE L 125 ALA L 127 SITE 2 AC3 24 LEU L 131 VAL L 157 THR L 160 TYR L 162 SITE 3 AC3 24 ASN L 166 PHE L 167 HIS L 168 HIS L 173 SITE 4 AC3 24 ALA L 176 ILE L 177 PHE L 180 SER L 244 SITE 5 AC3 24 ALA L 245 CYS L 247 MET L 248 BCL L 301 SITE 6 AC3 24 BCL L 304 BPH L 305 TYR M 210 BCL M 309 SITE 1 AC4 22 VAL L 157 TYR L 162 PHE L 181 BCL L 301 SITE 2 AC4 22 BCL L 302 ALA M 153 LEU M 156 TRP M 157 SITE 3 AC4 22 LEU M 160 THR M 186 ASN M 187 PHE M 189 SITE 4 AC4 22 SER M 190 LEU M 196 PHE M 197 HIS M 202 SITE 5 AC4 22 SER M 205 ILE M 206 TYR M 210 GLY M 280 SITE 6 AC4 22 ILE M 284 BPH M 310 SITE 1 AC5 15 TYR L 128 LEU L 131 PHE L 146 ILE L 150 SITE 2 AC5 15 HIS L 153 LEU L 154 BCL L 302 BPH L 305 SITE 3 AC5 15 PHE M 197 GLY M 203 ILE M 206 ALA M 207 SITE 4 AC5 15 TYR M 210 LDA M 313 HOH M 327 SITE 1 AC6 17 PHE L 181 LEU L 185 LEU L 189 BCL L 301 SITE 2 AC6 17 LEU M 60 GLY M 63 PHE M 68 VAL M 126 SITE 3 AC6 17 TRP M 129 THR M 146 ALA M 149 PHE M 150 SITE 4 AC6 17 ALA M 153 ALA M 273 THR M 277 BCL M 309 SITE 5 AC6 17 SPN M 312 SITE 1 AC7 20 PHE L 97 TRP L 100 GLU L 104 ILE L 117 SITE 2 AC7 20 ALA L 120 PHE L 121 ALA L 124 TYR L 128 SITE 3 AC7 20 PHE L 146 TYR L 148 GLY L 149 VAL L 241 SITE 4 AC7 20 BCL L 302 BCL L 304 TYR M 210 ALA M 213 SITE 5 AC7 20 LEU M 214 TRP M 252 MET M 256 U10 M 311 SITE 1 AC8 17 GLY L 35 THR L 38 PHE L 39 BPH L 305 SITE 2 AC8 17 MET M 218 HIS M 219 THR M 222 ALA M 248 SITE 3 AC8 17 ALA M 249 TRP M 252 MET M 256 ASN M 259 SITE 4 AC8 17 ALA M 260 ILE M 265 TRP M 268 MET M 272 SITE 5 AC8 17 LDA M 314 SITE 1 AC9 9 SER L 178 PHE L 179 LEU L 189 HIS L 190 SITE 2 AC9 9 LEU L 193 PHE L 216 SER L 223 ILE L 224 SITE 3 AC9 9 HOH L 322 SITE 1 BC1 15 BCL L 301 PHE M 67 PHE M 68 ILE M 70 SITE 2 BC1 15 GLY M 71 TRP M 75 SER M 119 PHE M 120 SITE 3 BC1 15 MET M 122 TRP M 157 PHE M 162 TYR M 177 SITE 4 BC1 15 ILE M 179 HIS M 182 BPH M 310 SITE 1 BC2 4 BCL L 304 PRO M 200 PHE M 208 LDA M 314 SITE 1 BC3 7 TYR H 40 LEU H 42 LDA H 261 ARG M 253 SITE 2 BC3 7 PHE M 258 U10 M 311 LDA M 313 SITE 1 BC4 4 VAL L 220 GLY L 221 SER M 30 VAL M 32 SITE 1 BC5 3 ALA H 25 ILE H 28 LDA M 314 CRYST1 76.850 134.720 141.640 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013012 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007423 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007060 0.00000