HEADER LYASE 09-APR-06 2GN6 TITLE CRYSTAL STRUCTURE OF UDP-GLCNAC INVERTING 4,6-DEHYDRATASE IN COMPLEX TITLE 2 WITH NADP AND UDP-GLCNAC COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-GLCNAC C6 DEHYDRATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FLAA1 PROTEIN; COMPND 5 EC: 4.2.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 210; SOURCE 4 GENE: HP0840; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET23 DERIVATIVE KEYWDS ROSSMANN FOLD, TYK TRIAD, SDR, ENZYME, DEHYDRATASE, UDP-GLCNAC, NADP, KEYWDS 2 LYASE EXPDTA X-RAY DIFFRACTION AUTHOR N.ISHIYAMA,C.CREUZENET,J.S.LAM,A.M.BERGHUIS REVDAT 6 30-AUG-23 2GN6 1 REMARK SEQADV REVDAT 5 18-OCT-17 2GN6 1 REMARK REVDAT 4 13-JUL-11 2GN6 1 VERSN REVDAT 3 24-FEB-09 2GN6 1 VERSN REVDAT 2 05-SEP-06 2GN6 1 JRNL REVDAT 1 09-MAY-06 2GN6 0 JRNL AUTH N.ISHIYAMA,C.CREUZENET,W.L.MILLER,M.DEMENDI,E.M.ANDERSON, JRNL AUTH 2 G.HARAUZ,J.S.LAM,A.M.BERGHUIS JRNL TITL STRUCTURAL STUDIES OF FLAA1 FROM HELICOBACTER PYLORI REVEAL JRNL TITL 2 THE MECHANISM FOR INVERTING 4,6-DEHYDRATASE ACTIVITY. JRNL REF J.BIOL.CHEM. V. 281 24489 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16651261 JRNL DOI 10.1074/JBC.M602393200 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 19888 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1970 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 39 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 399 REMARK 3 BIN R VALUE (WORKING SET) : 0.2780 REMARK 3 BIN FREE R VALUE : 0.3830 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 44 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5163 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 186 REMARK 3 SOLVENT ATOMS : 168 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.07800 REMARK 3 B22 (A**2) : -0.07800 REMARK 3 B33 (A**2) : 0.15600 REMARK 3 B12 (A**2) : -5.15700 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM SIGMAA (A) : 0.28 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.278 ; 1.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.242 ; 1.500 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.890 ; 1.500 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.708 ; 2.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 51.29 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : NAP_NI.PAR REMARK 3 PARAMETER FILE 3 : UD1_NI.PAR REMARK 3 PARAMETER FILE 4 : CNS_TOPPAR:WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : MES_NI.PAR REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GN6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037318. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-01 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9803 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20342 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.29500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1SB8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% (V/V) PEG-200, 100 MM MES, 5% REMARK 280 (V/W) PEG-3000, 4% (V/V) ACETONE, PH 6, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.98900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 53.98900 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.98900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HEXAMER GENERATED FROM THE TWO REMARK 300 PROTOMERS IN THE ASYMMETRIC UNIT BY THE OPERATIONS:(-Y,X-Y,Z) AND (- REMARK 300 X+Y,-X,Z) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 54.92300 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 95.12943 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -54.92300 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 95.12943 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 54.92300 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 95.12943 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 MET A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 ASN A 3 REMARK 465 HIS A 4 REMARK 465 MET B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 MET B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 ASN B 3 REMARK 465 HIS B 4 REMARK 465 GLN B 5 REMARK 465 ASN B 6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 6 82.47 30.59 REMARK 500 ASN A 35 40.88 -102.84 REMARK 500 PHE A 56 53.40 -116.83 REMARK 500 ASN A 57 72.69 -67.92 REMARK 500 ALA A 89 165.90 177.07 REMARK 500 SER A 130 -149.50 -110.10 REMARK 500 THR A 131 149.77 -174.03 REMARK 500 ASN A 157 31.45 -72.02 REMARK 500 LYS A 159 83.15 -153.92 REMARK 500 SER A 161 39.90 -77.86 REMARK 500 SER A 162 92.19 172.72 REMARK 500 VAL A 175 115.69 -39.60 REMARK 500 ARG A 178 67.45 -51.16 REMARK 500 SER A 180 -152.09 -95.28 REMARK 500 PRO A 183 17.97 -63.49 REMARK 500 ASN A 191 51.96 -115.63 REMARK 500 LYS A 192 72.14 47.79 REMARK 500 ALA A 193 93.82 -63.49 REMARK 500 GLU A 195 135.41 -179.70 REMARK 500 THR A 199 -126.96 -137.44 REMARK 500 ALA A 245 -37.91 -168.30 REMARK 500 ALA A 247 46.37 162.75 REMARK 500 ASP A 271 4.56 -66.09 REMARK 500 ASP A 281 16.68 -144.64 REMARK 500 LYS A 308 -162.84 -64.04 REMARK 500 PRO A 311 -10.10 -49.58 REMARK 500 HIS A 318 -9.67 -52.84 REMARK 500 ASN A 319 85.76 -169.24 REMARK 500 PRO A 326 0.77 -59.84 REMARK 500 PHE B 56 57.55 -115.93 REMARK 500 ALA B 89 162.39 179.79 REMARK 500 HIS B 92 107.14 -59.12 REMARK 500 SER B 130 -152.01 -100.83 REMARK 500 ARG B 178 101.30 -50.10 REMARK 500 SER B 180 -150.78 -114.76 REMARK 500 PHE B 185 18.95 -69.88 REMARK 500 ASN B 191 10.10 -62.56 REMARK 500 LYS B 192 13.67 53.57 REMARK 500 GLU B 195 103.77 -172.86 REMARK 500 ASP B 200 125.01 -175.99 REMARK 500 MET B 203 131.79 -34.10 REMARK 500 MET B 239 0.11 -66.44 REMARK 500 ALA B 247 67.20 175.58 REMARK 500 THR B 250 143.64 164.23 REMARK 500 ILE B 254 91.48 -56.69 REMARK 500 PRO B 259 103.93 -49.14 REMARK 500 ASN B 319 65.84 -107.15 REMARK 500 PRO B 326 -16.68 -48.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 UD1 A 335 REMARK 615 UD1 B 335 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 334 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UD1 A 335 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP B 334 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UD1 B 335 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES B 336 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GN4 RELATED DB: PDB DBREF 2GN6 A 1 333 UNP O25511 O25511_HELPY 1 333 DBREF 2GN6 B 1 333 UNP O25511 O25511_HELPY 1 333 SEQADV 2GN6 MET A -10 UNP O25511 CLONING ARTIFACT SEQADV 2GN6 HIS A -9 UNP O25511 EXPRESSION TAG SEQADV 2GN6 HIS A -8 UNP O25511 EXPRESSION TAG SEQADV 2GN6 HIS A -7 UNP O25511 EXPRESSION TAG SEQADV 2GN6 HIS A -6 UNP O25511 EXPRESSION TAG SEQADV 2GN6 HIS A -5 UNP O25511 EXPRESSION TAG SEQADV 2GN6 HIS A -4 UNP O25511 EXPRESSION TAG SEQADV 2GN6 GLY A -3 UNP O25511 CLONING ARTIFACT SEQADV 2GN6 SER A -2 UNP O25511 CLONING ARTIFACT SEQADV 2GN6 MET A -1 UNP O25511 CLONING ARTIFACT SEQADV 2GN6 SER A 0 UNP O25511 CLONING ARTIFACT SEQADV 2GN6 MET B -10 UNP O25511 CLONING ARTIFACT SEQADV 2GN6 HIS B -9 UNP O25511 EXPRESSION TAG SEQADV 2GN6 HIS B -8 UNP O25511 EXPRESSION TAG SEQADV 2GN6 HIS B -7 UNP O25511 EXPRESSION TAG SEQADV 2GN6 HIS B -6 UNP O25511 EXPRESSION TAG SEQADV 2GN6 HIS B -5 UNP O25511 EXPRESSION TAG SEQADV 2GN6 HIS B -4 UNP O25511 EXPRESSION TAG SEQADV 2GN6 GLY B -3 UNP O25511 CLONING ARTIFACT SEQADV 2GN6 SER B -2 UNP O25511 CLONING ARTIFACT SEQADV 2GN6 MET B -1 UNP O25511 CLONING ARTIFACT SEQADV 2GN6 SER B 0 UNP O25511 CLONING ARTIFACT SEQRES 1 A 344 MET HIS HIS HIS HIS HIS HIS GLY SER MET SER MET PRO SEQRES 2 A 344 ASN HIS GLN ASN MET LEU ASP ASN GLN THR ILE LEU ILE SEQRES 3 A 344 THR GLY GLY THR GLY SER PHE GLY LYS CYS PHE VAL ARG SEQRES 4 A 344 LYS VAL LEU ASP THR THR ASN ALA LYS LYS ILE ILE VAL SEQRES 5 A 344 TYR SER ARG ASP GLU LEU LYS GLN SER GLU MET ALA MET SEQRES 6 A 344 GLU PHE ASN ASP PRO ARG MET ARG PHE PHE ILE GLY ASP SEQRES 7 A 344 VAL ARG ASP LEU GLU ARG LEU ASN TYR ALA LEU GLU GLY SEQRES 8 A 344 VAL ASP ILE CYS ILE HIS ALA ALA ALA LEU LYS HIS VAL SEQRES 9 A 344 PRO ILE ALA GLU TYR ASN PRO LEU GLU CYS ILE LYS THR SEQRES 10 A 344 ASN ILE MET GLY ALA SER ASN VAL ILE ASN ALA CYS LEU SEQRES 11 A 344 LYS ASN ALA ILE SER GLN VAL ILE ALA LEU SER THR ASP SEQRES 12 A 344 LYS ALA ALA ASN PRO ILE ASN LEU TYR GLY ALA THR LYS SEQRES 13 A 344 LEU CYS SER ASP LYS LEU PHE VAL SER ALA ASN ASN PHE SEQRES 14 A 344 LYS GLY SER SER GLN THR GLN PHE SER VAL VAL ARG TYR SEQRES 15 A 344 GLY ASN VAL VAL GLY SER ARG GLY SER VAL VAL PRO PHE SEQRES 16 A 344 PHE LYS LYS LEU VAL GLN ASN LYS ALA SER GLU ILE PRO SEQRES 17 A 344 ILE THR ASP ILE ARG MET THR ARG PHE TRP ILE THR LEU SEQRES 18 A 344 ASP GLU GLY VAL SER PHE VAL LEU LYS SER LEU LYS ARG SEQRES 19 A 344 MET HIS GLY GLY GLU ILE PHE VAL PRO LYS ILE PRO SER SEQRES 20 A 344 MET LYS MET THR ASP LEU ALA LYS ALA LEU ALA PRO ASN SEQRES 21 A 344 THR PRO THR LYS ILE ILE GLY ILE ARG PRO GLY GLU LYS SEQRES 22 A 344 LEU HIS GLU VAL MET ILE PRO LYS ASP GLU SER HIS LEU SEQRES 23 A 344 ALA LEU GLU PHE GLU ASP PHE PHE ILE ILE GLN PRO THR SEQRES 24 A 344 ILE SER PHE GLN THR PRO LYS ASP TYR THR LEU THR LYS SEQRES 25 A 344 LEU HIS GLU LYS GLY GLN LYS VAL ALA PRO ASP PHE GLU SEQRES 26 A 344 TYR SER SER HIS ASN ASN ASN GLN TRP LEU GLU PRO ASP SEQRES 27 A 344 ASP LEU LEU LYS LEU LEU SEQRES 1 B 344 MET HIS HIS HIS HIS HIS HIS GLY SER MET SER MET PRO SEQRES 2 B 344 ASN HIS GLN ASN MET LEU ASP ASN GLN THR ILE LEU ILE SEQRES 3 B 344 THR GLY GLY THR GLY SER PHE GLY LYS CYS PHE VAL ARG SEQRES 4 B 344 LYS VAL LEU ASP THR THR ASN ALA LYS LYS ILE ILE VAL SEQRES 5 B 344 TYR SER ARG ASP GLU LEU LYS GLN SER GLU MET ALA MET SEQRES 6 B 344 GLU PHE ASN ASP PRO ARG MET ARG PHE PHE ILE GLY ASP SEQRES 7 B 344 VAL ARG ASP LEU GLU ARG LEU ASN TYR ALA LEU GLU GLY SEQRES 8 B 344 VAL ASP ILE CYS ILE HIS ALA ALA ALA LEU LYS HIS VAL SEQRES 9 B 344 PRO ILE ALA GLU TYR ASN PRO LEU GLU CYS ILE LYS THR SEQRES 10 B 344 ASN ILE MET GLY ALA SER ASN VAL ILE ASN ALA CYS LEU SEQRES 11 B 344 LYS ASN ALA ILE SER GLN VAL ILE ALA LEU SER THR ASP SEQRES 12 B 344 LYS ALA ALA ASN PRO ILE ASN LEU TYR GLY ALA THR LYS SEQRES 13 B 344 LEU CYS SER ASP LYS LEU PHE VAL SER ALA ASN ASN PHE SEQRES 14 B 344 LYS GLY SER SER GLN THR GLN PHE SER VAL VAL ARG TYR SEQRES 15 B 344 GLY ASN VAL VAL GLY SER ARG GLY SER VAL VAL PRO PHE SEQRES 16 B 344 PHE LYS LYS LEU VAL GLN ASN LYS ALA SER GLU ILE PRO SEQRES 17 B 344 ILE THR ASP ILE ARG MET THR ARG PHE TRP ILE THR LEU SEQRES 18 B 344 ASP GLU GLY VAL SER PHE VAL LEU LYS SER LEU LYS ARG SEQRES 19 B 344 MET HIS GLY GLY GLU ILE PHE VAL PRO LYS ILE PRO SER SEQRES 20 B 344 MET LYS MET THR ASP LEU ALA LYS ALA LEU ALA PRO ASN SEQRES 21 B 344 THR PRO THR LYS ILE ILE GLY ILE ARG PRO GLY GLU LYS SEQRES 22 B 344 LEU HIS GLU VAL MET ILE PRO LYS ASP GLU SER HIS LEU SEQRES 23 B 344 ALA LEU GLU PHE GLU ASP PHE PHE ILE ILE GLN PRO THR SEQRES 24 B 344 ILE SER PHE GLN THR PRO LYS ASP TYR THR LEU THR LYS SEQRES 25 B 344 LEU HIS GLU LYS GLY GLN LYS VAL ALA PRO ASP PHE GLU SEQRES 26 B 344 TYR SER SER HIS ASN ASN ASN GLN TRP LEU GLU PRO ASP SEQRES 27 B 344 ASP LEU LEU LYS LEU LEU HET NAP A 334 48 HET UD1 A 335 39 HET NAP B 334 48 HET UD1 B 335 39 HET MES B 336 12 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM UD1 URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 4 UD1 2(C17 H27 N3 O17 P2) FORMUL 7 MES C6 H13 N O4 S FORMUL 8 HOH *168(H2 O) HELIX 1 1 GLY A 20 THR A 34 1 15 HELIX 2 2 ASP A 45 PHE A 56 1 12 HELIX 3 3 ASP A 70 LEU A 78 1 9 HELIX 4 4 HIS A 92 ASN A 99 1 8 HELIX 5 5 ASN A 99 ASN A 121 1 23 HELIX 6 6 THR A 131 ALA A 135 5 5 HELIX 7 7 ASN A 139 ALA A 155 1 17 HELIX 8 8 THR A 209 MET A 224 1 16 HELIX 9 9 THR A 240 LYS A 244 5 5 HELIX 10 10 PRO A 269 SER A 273 5 5 HELIX 11 11 ASP A 327 LEU A 332 1 6 HELIX 12 12 GLY B 20 THR B 34 1 15 HELIX 13 13 ASP B 45 PHE B 56 1 12 HELIX 14 14 ASP B 70 LEU B 78 1 9 HELIX 15 15 HIS B 92 ASN B 99 1 8 HELIX 16 16 ASN B 99 ASN B 121 1 23 HELIX 17 17 THR B 131 ALA B 135 5 5 HELIX 18 18 ASN B 139 ALA B 155 1 17 HELIX 19 19 ASN B 156 PHE B 158 5 3 HELIX 20 20 PRO B 183 ASN B 191 1 9 HELIX 21 21 THR B 209 MET B 224 1 16 HELIX 22 22 THR B 240 LEU B 246 1 7 HELIX 23 23 PRO B 269 SER B 273 5 5 HELIX 24 24 GLU B 325 LEU B 330 1 6 SHEET 1 A 9 MET A 61 ILE A 65 0 SHEET 2 A 9 LYS A 38 SER A 43 1 N VAL A 41 O ARG A 62 SHEET 3 A 9 THR A 12 THR A 16 1 N ILE A 13 O ILE A 40 SHEET 4 A 9 ILE A 83 HIS A 86 1 O ILE A 83 N LEU A 14 SHEET 5 A 9 GLN A 125 LEU A 129 1 O ILE A 127 N HIS A 86 SHEET 6 A 9 GLN A 165 VAL A 169 1 O SER A 167 N VAL A 126 SHEET 7 A 9 ILE A 229 PRO A 232 1 O PHE A 230 N VAL A 168 SHEET 8 A 9 PHE A 282 ILE A 285 -1 O PHE A 283 N VAL A 231 SHEET 9 A 9 ALA A 276 GLU A 278 -1 N LEU A 277 O ILE A 284 SHEET 1 B 3 ASN A 173 VAL A 174 0 SHEET 2 B 3 THR A 204 ILE A 208 1 O ILE A 208 N ASN A 173 SHEET 3 B 3 SER A 236 LYS A 238 -1 O MET A 237 N ARG A 205 SHEET 1 C 2 VAL A 266 ILE A 268 0 SHEET 2 C 2 TYR A 315 SER A 316 -1 O TYR A 315 N MET A 267 SHEET 1 D 9 MET B 61 ILE B 65 0 SHEET 2 D 9 LYS B 38 SER B 43 1 N VAL B 41 O PHE B 64 SHEET 3 D 9 THR B 12 THR B 16 1 N ILE B 13 O ILE B 40 SHEET 4 D 9 ILE B 83 HIS B 86 1 O ILE B 85 N LEU B 14 SHEET 5 D 9 GLN B 125 LEU B 129 1 O ILE B 127 N HIS B 86 SHEET 6 D 9 GLN B 165 VAL B 169 1 O GLN B 165 N VAL B 126 SHEET 7 D 9 ILE B 229 PRO B 232 1 O PHE B 230 N VAL B 168 SHEET 8 D 9 PHE B 282 ILE B 285 -1 O PHE B 283 N VAL B 231 SHEET 9 D 9 ALA B 276 GLU B 278 -1 N LEU B 277 O ILE B 284 SHEET 1 E 3 ASN B 173 VAL B 174 0 SHEET 2 E 3 THR B 204 ILE B 208 1 O ILE B 208 N ASN B 173 SHEET 3 E 3 SER B 236 LYS B 238 -1 O MET B 237 N ARG B 205 SHEET 1 F 2 ILE B 196 ILE B 198 0 SHEET 2 F 2 THR B 252 ILE B 254 1 O LYS B 253 N ILE B 196 SHEET 1 G 2 VAL B 266 ILE B 268 0 SHEET 2 G 2 TYR B 315 SER B 316 -1 O TYR B 315 N MET B 267 SITE 1 AC1 27 GLY A 17 THR A 19 GLY A 20 SER A 21 SITE 2 AC1 27 PHE A 22 SER A 43 ARG A 44 ASP A 45 SITE 3 AC1 27 LYS A 48 ASP A 67 VAL A 68 ALA A 87 SITE 4 AC1 27 ALA A 88 ALA A 89 LYS A 91 THR A 106 SITE 5 AC1 27 SER A 130 TYR A 141 LYS A 145 TYR A 171 SITE 6 AC1 27 GLY A 172 VAL A 174 SER A 177 ARG A 178 SITE 7 AC1 27 HOH A 336 HOH A 345 HOH A 401 SITE 1 AC2 12 LYS A 133 ASN A 173 SER A 180 VAL A 181 SITE 2 AC2 12 PRO A 197 ILE A 198 THR A 199 MET A 203 SITE 3 AC2 12 ARG A 205 MET A 239 ARG A 258 GLU A 261 SITE 1 AC3 31 GLY B 17 THR B 19 GLY B 20 SER B 21 SITE 2 AC3 31 PHE B 22 SER B 43 ARG B 44 ASP B 45 SITE 3 AC3 31 LYS B 48 GLY B 66 ASP B 67 VAL B 68 SITE 4 AC3 31 ALA B 87 ALA B 88 ALA B 89 LYS B 91 SITE 5 AC3 31 THR B 106 LEU B 129 SER B 130 TYR B 141 SITE 6 AC3 31 LYS B 145 TYR B 171 GLY B 172 VAL B 174 SITE 7 AC3 31 SER B 177 ARG B 178 HOH B 346 HOH B 347 SITE 8 AC3 31 HOH B 361 HOH B 363 HOH B 376 SITE 1 AC4 12 LYS B 133 ASN B 173 SER B 180 VAL B 181 SITE 2 AC4 12 PRO B 197 ILE B 198 THR B 199 MET B 203 SITE 3 AC4 12 ARG B 205 MET B 239 ARG B 258 GLU B 261 SITE 1 AC5 8 PRO A 100 LEU A 101 ARG B 73 TYR B 76 SITE 2 AC5 8 SER B 112 ILE B 115 ASN B 116 HOH B 378 CRYST1 109.846 109.846 107.978 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009104 0.005256 0.000000 0.00000 SCALE2 0.000000 0.010512 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009261 0.00000