HEADER RNA BINDING PROTEIN 12-APR-06 2GO9 TITLE RRM DOMAINS 1 AND 2 OF PRP24 FROM S. CEREVISIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: U4/U6 SNRNA-ASSOCIATED SPLICING FACTOR PRP24; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: (RRM DOMAINS 1 AND 2); COMPND 5 SYNONYM: U4/U6 SNRNP PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: PRP24; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET21B; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRS313-PRP24(12) KEYWDS BETA-ALPHA-BETA, RRM, RBD, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR N.J.REITER,D.H.LEE,M.TONELLI,S.K.KWAN,D.A.BROW,S.E.BUTCHER REVDAT 5 29-MAY-24 2GO9 1 REMARK REVDAT 4 09-MAR-22 2GO9 1 REMARK SEQADV REVDAT 3 24-FEB-09 2GO9 1 VERSN REVDAT 2 03-APR-07 2GO9 1 JRNL REVDAT 1 27-FEB-07 2GO9 0 JRNL AUTH E.BAE,N.J.REITER,C.A.BINGMAN,S.S.KWAN,D.LEE,G.N.PHILLIPS, JRNL AUTH 2 S.E.BUTCHER,D.A.BROW JRNL TITL STRUCTURE AND INTERACTIONS OF THE FIRST THREE RNA JRNL TITL 2 RECOGNITION MOTIFS OF SPLICING FACTOR PRP24. JRNL REF J.MOL.BIOL. V. 367 1447 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17320109 JRNL DOI 10.1016/J.JMB.2007.01.078 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1.4 REMARK 3 AUTHORS : P.GUNTERT ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GO9 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037355. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.1 M KCL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.3-0.8 MM PROTEIN, 50 MM K(PO)4 REMARK 210 (PH 6.5), 100 MM KCL, 2 MM DTT REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; 3D_13C_ REMARK 210 AROMATIC_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1.4 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 35 HG SER A 110 1.57 REMARK 500 HG1 THR A 82 OD1 ASP A 128 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 VAL A 21 CA - CB - CG2 ANGL. DEV. = 9.3 DEGREES REMARK 500 7 ARG A 45 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 2 89.43 134.72 REMARK 500 1 ASN A 11 -62.66 94.64 REMARK 500 1 LEU A 12 86.52 35.55 REMARK 500 1 SER A 39 76.41 -107.53 REMARK 500 1 GLU A 72 108.82 -56.48 REMARK 500 1 GLU A 80 6.85 -63.25 REMARK 500 1 THR A 86 -59.99 -123.97 REMARK 500 1 ASN A 87 23.94 -76.24 REMARK 500 1 TYR A 92 89.37 -69.78 REMARK 500 1 ASN A 105 -82.37 -98.63 REMARK 500 1 VAL A 106 -50.14 146.33 REMARK 500 1 LEU A 109 -61.08 -96.39 REMARK 500 1 LEU A 116 -73.21 -90.53 REMARK 500 1 ARG A 117 -82.21 -112.47 REMARK 500 1 PHE A 118 -65.59 -122.64 REMARK 500 1 ASN A 119 -33.74 -160.19 REMARK 500 1 THR A 120 44.67 -81.83 REMARK 500 1 SER A 131 14.08 -68.84 REMARK 500 1 PRO A 159 40.28 -73.39 REMARK 500 1 LEU A 160 -27.85 -148.15 REMARK 500 2 THR A 5 30.06 -81.09 REMARK 500 2 ASN A 11 -62.71 80.46 REMARK 500 2 LEU A 12 159.62 62.15 REMARK 500 2 SER A 39 58.66 -151.27 REMARK 500 2 ASN A 87 71.62 74.02 REMARK 500 2 ASN A 105 -103.74 -134.64 REMARK 500 2 VAL A 106 -52.43 163.34 REMARK 500 2 LEU A 116 14.13 -69.26 REMARK 500 2 ARG A 122 29.16 -160.55 REMARK 500 2 ARG A 123 62.50 39.49 REMARK 500 2 SER A 131 16.28 -64.56 REMARK 500 2 SER A 157 -177.25 -172.25 REMARK 500 2 LEU A 160 -9.99 -156.78 REMARK 500 3 ARG A 2 -78.95 -119.21 REMARK 500 3 LEU A 4 77.41 -118.37 REMARK 500 3 ASN A 11 -61.64 72.76 REMARK 500 3 LEU A 12 160.68 60.92 REMARK 500 3 ALA A 52 -9.76 59.16 REMARK 500 3 HIS A 65 31.18 -81.11 REMARK 500 3 GLN A 70 23.10 -140.89 REMARK 500 3 GLU A 80 56.73 -91.71 REMARK 500 3 CYS A 81 20.22 -78.79 REMARK 500 3 VAL A 106 -24.10 67.32 REMARK 500 3 PRO A 114 -167.54 -77.06 REMARK 500 3 SER A 115 34.62 -148.94 REMARK 500 3 LEU A 116 14.24 -66.15 REMARK 500 3 THR A 120 99.37 -49.00 REMARK 500 3 SER A 121 -59.43 -120.69 REMARK 500 3 SER A 131 14.50 -63.37 REMARK 500 3 SER A 157 -152.05 55.43 REMARK 500 REMARK 500 THIS ENTRY HAS 162 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 108 LEU A 109 9 144.65 REMARK 500 THR A 154 LYS A 155 9 148.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 22 0.08 SIDE CHAIN REMARK 500 1 TYR A 92 0.08 SIDE CHAIN REMARK 500 1 ARG A 123 0.10 SIDE CHAIN REMARK 500 2 ARG A 2 0.08 SIDE CHAIN REMARK 500 2 ARG A 45 0.08 SIDE CHAIN REMARK 500 2 TYR A 54 0.10 SIDE CHAIN REMARK 500 2 ARG A 112 0.10 SIDE CHAIN REMARK 500 2 ARG A 136 0.09 SIDE CHAIN REMARK 500 2 TYR A 137 0.10 SIDE CHAIN REMARK 500 3 ARG A 45 0.09 SIDE CHAIN REMARK 500 3 TYR A 54 0.10 SIDE CHAIN REMARK 500 3 ARG A 117 0.10 SIDE CHAIN REMARK 500 3 ARG A 136 0.10 SIDE CHAIN REMARK 500 4 TYR A 54 0.11 SIDE CHAIN REMARK 500 4 ARG A 122 0.16 SIDE CHAIN REMARK 500 5 TYR A 24 0.08 SIDE CHAIN REMARK 500 5 ARG A 98 0.09 SIDE CHAIN REMARK 500 6 TYR A 16 0.07 SIDE CHAIN REMARK 500 6 TYR A 24 0.10 SIDE CHAIN REMARK 500 6 ARG A 95 0.08 SIDE CHAIN REMARK 500 7 ARG A 45 0.10 SIDE CHAIN REMARK 500 7 TYR A 54 0.11 SIDE CHAIN REMARK 500 8 ARG A 53 0.08 SIDE CHAIN REMARK 500 8 ARG A 136 0.09 SIDE CHAIN REMARK 500 9 ARG A 45 0.08 SIDE CHAIN REMARK 500 9 ARG A 53 0.09 SIDE CHAIN REMARK 500 10 ARG A 2 0.11 SIDE CHAIN REMARK 500 10 TYR A 16 0.08 SIDE CHAIN REMARK 500 10 ARG A 98 0.16 SIDE CHAIN REMARK 500 10 ARG A 112 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 2GO9 A 2 161 UNP P49960 PRP24_YEAST 38 197 SEQADV 2GO9 MET A 1 UNP P49960 INITIATING METHIONINE SEQRES 1 A 161 MET ARG GLU LEU THR THR VAL LEU VAL LYS ASN LEU PRO SEQRES 2 A 161 LYS SER TYR ASN GLN ASN LYS VAL TYR LYS TYR PHE LYS SEQRES 3 A 161 HIS CYS GLY PRO ILE ILE HIS VAL ASP VAL ALA ASP SER SEQRES 4 A 161 LEU LYS LYS ASN PHE ARG PHE ALA ARG ILE GLU PHE ALA SEQRES 5 A 161 ARG TYR ASP GLY ALA LEU ALA ALA ILE THR LYS THR HIS SEQRES 6 A 161 LYS VAL VAL GLY GLN ASN GLU ILE ILE VAL SER HIS LEU SEQRES 7 A 161 THR GLU CYS THR LEU TRP MET THR ASN PHE PRO PRO SER SEQRES 8 A 161 TYR THR GLN ARG ASN ILE ARG ASP LEU LEU GLN ASP ILE SEQRES 9 A 161 ASN VAL VAL ALA LEU SER ILE ARG LEU PRO SER LEU ARG SEQRES 10 A 161 PHE ASN THR SER ARG ARG PHE ALA TYR ILE ASP VAL THR SEQRES 11 A 161 SER LYS GLU ASP ALA ARG TYR CYS VAL GLU LYS LEU ASN SEQRES 12 A 161 GLY LEU LYS ILE GLU GLY TYR THR LEU VAL THR LYS VAL SEQRES 13 A 161 SER ASN PRO LEU GLU HELIX 1 1 PRO A 13 TYR A 16 5 4 HELIX 2 2 ASN A 17 GLY A 29 1 13 HELIX 3 3 ARG A 53 LYS A 63 1 11 HELIX 4 4 THR A 93 ASN A 105 1 13 HELIX 5 5 SER A 131 ASN A 143 1 13 SHEET 1 A 4 HIS A 33 ALA A 37 0 SHEET 2 A 4 ARG A 45 GLU A 50 -1 O PHE A 46 N ALA A 37 SHEET 3 A 4 THR A 6 ASN A 11 -1 N VAL A 7 O ILE A 49 SHEET 4 A 4 ILE A 74 HIS A 77 -1 O SER A 76 N LEU A 8 SHEET 1 B 4 SER A 110 ARG A 112 0 SHEET 2 B 4 ALA A 125 ASP A 128 -1 O TYR A 126 N ARG A 112 SHEET 3 B 4 THR A 82 MET A 85 -1 N LEU A 83 O ILE A 127 SHEET 4 B 4 THR A 154 VAL A 156 -1 O LYS A 155 N TRP A 84 SHEET 1 C 2 LYS A 146 ILE A 147 0 SHEET 2 C 2 TYR A 150 THR A 151 -1 O TYR A 150 N ILE A 147 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1