HEADER HYDROLASE 13-APR-06 2GOK TITLE CRYSTAL STRUCTURE OF THE IMIDAZOLONEPROPIONASE FROM AGROBACTERIUM TITLE 2 TUMEFACIENS AT 1.87 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMIDAZOLONEPROPIONASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: IMIDAZOLONE-5-PROPIONATE HYDROLASE; COMPND 5 EC: 3.5.2.7; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS STR.; SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 STRAIN: C58; SOURCE 5 GENE: HUTI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS 9252B, IMIDAZOLONEPROPIONASE, PROTEIN STRUCTURE INITIATIVE II (PSI- KEYWDS 2 II), HISTIDINE METABOLISM, STRUCTURAL GENOMICS, NEW YORK SGX KEYWDS 3 RESEARCH CENTER FOR STRUCTURAL GENOMICS, NYSGXRC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.TYAGI,D.KUMARAN,S.SWAMINATHAN,S.K.BURLEY,NEW YORK SGX RESEARCH AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 6 14-FEB-24 2GOK 1 REMARK REVDAT 5 03-FEB-21 2GOK 1 AUTHOR JRNL REMARK SEQADV REVDAT 5 2 1 LINK REVDAT 4 13-JUL-11 2GOK 1 VERSN REVDAT 3 24-FEB-09 2GOK 1 VERSN REVDAT 2 22-JUL-08 2GOK 1 JRNL REVDAT 1 25-APR-06 2GOK 0 JRNL AUTH R.TYAGI,D.KUMARAN,S.K.BURLEY,S.SWAMINATHAN JRNL TITL X-RAY STRUCTURE OF IMIDAZOLONEPROPIONASE FROM AGROBACTERIUM JRNL TITL 2 TUMEFACIENS AT 1.87 A RESOLUTION. JRNL REF PROTEINS V. 69 652 2007 JRNL REFN ISSN 0887-3585 JRNL PMID 17640072 JRNL DOI 10.1002/PROT.21559 REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2358226.410 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 68837 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3475 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.87 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.99 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 10149 REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 535 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.013 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6042 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 496 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.48000 REMARK 3 B22 (A**2) : 6.91000 REMARK 3 B33 (A**2) : -1.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.54000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM SIGMAA (A) : 0.24 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.24 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.730 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.210 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.740 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.100 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.110 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 49.28 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : GOL.PAR REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : GOL.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CLOSE CONTACTS WITH FE IONS IN REMARK REMARK 3 500 ARE DUE TO METAL COORDINATION. REMARK 4 REMARK 4 2GOK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037366. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-06; 01-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; NSLS REMARK 200 BEAMLINE : 31-ID; X12C REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.979; 1.009 REMARK 200 MONOCHROMATOR : SI III CHANNEL; NULL REMARK 200 OPTICS : NULL; MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM; ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CBASS REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69172 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.870 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08900 REMARK 200 FOR THE DATA SET : 6.8500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.55000 REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXD, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL2, 0.1M BIS-TRIS, 25% PEG REMARK 280 3350, PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 70.37700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.81500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 70.37700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.81500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 503 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LEU A 3 REMARK 465 PRO A 4 REMARK 465 GLY A 5 REMARK 465 ASN A 6 REMARK 465 ASN A 7 REMARK 465 SER A 8 REMARK 465 ALA A 9 REMARK 465 LYS A 10 REMARK 465 GLY A 11 REMARK 465 THR A 12 REMARK 465 ALA A 13 REMARK 465 THR A 14 REMARK 465 GLY A 15 REMARK 465 ASN A 16 REMARK 465 PRO A 421 REMARK 465 GLU A 422 REMARK 465 GLY A 423 REMARK 465 HIS A 424 REMARK 465 HIS A 425 REMARK 465 HIS A 426 REMARK 465 HIS A 427 REMARK 465 HIS A 428 REMARK 465 HIS A 429 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LEU B 3 REMARK 465 PRO B 4 REMARK 465 GLY B 5 REMARK 465 ASN B 6 REMARK 465 ASN B 7 REMARK 465 SER B 8 REMARK 465 ALA B 9 REMARK 465 LYS B 10 REMARK 465 GLY B 11 REMARK 465 THR B 12 REMARK 465 ALA B 13 REMARK 465 THR B 14 REMARK 465 GLY B 15 REMARK 465 ASN B 16 REMARK 465 PRO B 421 REMARK 465 GLU B 422 REMARK 465 GLY B 423 REMARK 465 HIS B 424 REMARK 465 HIS B 425 REMARK 465 HIS B 426 REMARK 465 HIS B 427 REMARK 465 HIS B 428 REMARK 465 HIS B 429 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 156 -140.51 -94.50 REMARK 500 ALA A 233 -122.64 -132.93 REMARK 500 HIS A 279 -79.12 93.08 REMARK 500 LEU A 280 19.32 59.91 REMARK 500 SER A 337 69.46 -156.89 REMARK 500 THR A 365 -91.64 -134.46 REMARK 500 ASP A 393 69.37 -102.57 REMARK 500 ASN B 41 59.28 39.20 REMARK 500 PHE B 91 161.33 179.40 REMARK 500 SER B 156 -146.37 -101.44 REMARK 500 ALA B 190 49.72 -79.85 REMARK 500 ALA B 233 -114.55 -127.69 REMARK 500 HIS B 279 -79.66 90.20 REMARK 500 SER B 337 71.14 -160.05 REMARK 500 THR B 365 -90.12 -132.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 500 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 86 NE2 REMARK 620 2 HIS A 88 NE2 110.6 REMARK 620 3 HIS A 256 NE2 92.4 99.1 REMARK 620 4 ASP A 331 OD1 83.5 89.6 171.2 REMARK 620 5 HOH A 610 O 136.3 111.1 93.4 84.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 203 OD2 REMARK 620 2 ASP B 393 OD2 95.7 REMARK 620 3 HOH B 522 O 87.6 91.6 REMARK 620 4 HOH B 541 O 87.4 80.3 170.0 REMARK 620 5 HOH B 544 O 171.2 93.0 93.4 92.8 REMARK 620 6 HOH B 685 O 78.8 171.8 94.1 93.4 92.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 273 OD1 REMARK 620 2 ASN A 273 OD1 173.0 REMARK 620 3 HOH A 571 O 89.8 85.1 REMARK 620 4 HOH A 571 O 85.7 89.2 85.2 REMARK 620 5 HOH A 626 O 87.5 97.6 177.2 94.0 REMARK 620 6 HOH A 626 O 98.3 86.8 94.0 175.9 87.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 86 NE2 REMARK 620 2 HIS B 88 NE2 111.8 REMARK 620 3 HIS B 256 NE2 89.5 103.0 REMARK 620 4 ASP B 331 OD1 84.6 87.7 169.1 REMARK 620 5 HOH B 581 O 125.0 119.9 96.1 80.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-9252B RELATED DB: TARGETDB DBREF 2GOK A 4 421 UNP Q8U8Z6 HUTI_AGRT5 2 419 DBREF 2GOK B 4 421 UNP Q8U8Z6 HUTI_AGRT5 2 419 SEQADV 2GOK MET A 1 UNP Q8U8Z6 CLONING ARTIFACT SEQADV 2GOK SER A 2 UNP Q8U8Z6 CLONING ARTIFACT SEQADV 2GOK LEU A 3 UNP Q8U8Z6 CLONING ARTIFACT SEQADV 2GOK GLU A 422 UNP Q8U8Z6 CLONING ARTIFACT SEQADV 2GOK GLY A 423 UNP Q8U8Z6 CLONING ARTIFACT SEQADV 2GOK HIS A 424 UNP Q8U8Z6 EXPRESSION TAG SEQADV 2GOK HIS A 425 UNP Q8U8Z6 EXPRESSION TAG SEQADV 2GOK HIS A 426 UNP Q8U8Z6 EXPRESSION TAG SEQADV 2GOK HIS A 427 UNP Q8U8Z6 EXPRESSION TAG SEQADV 2GOK HIS A 428 UNP Q8U8Z6 EXPRESSION TAG SEQADV 2GOK HIS A 429 UNP Q8U8Z6 EXPRESSION TAG SEQADV 2GOK MET B 1 UNP Q8U8Z6 CLONING ARTIFACT SEQADV 2GOK SER B 2 UNP Q8U8Z6 CLONING ARTIFACT SEQADV 2GOK LEU B 3 UNP Q8U8Z6 CLONING ARTIFACT SEQADV 2GOK GLU B 422 UNP Q8U8Z6 CLONING ARTIFACT SEQADV 2GOK GLY B 423 UNP Q8U8Z6 CLONING ARTIFACT SEQADV 2GOK HIS B 424 UNP Q8U8Z6 EXPRESSION TAG SEQADV 2GOK HIS B 425 UNP Q8U8Z6 EXPRESSION TAG SEQADV 2GOK HIS B 426 UNP Q8U8Z6 EXPRESSION TAG SEQADV 2GOK HIS B 427 UNP Q8U8Z6 EXPRESSION TAG SEQADV 2GOK HIS B 428 UNP Q8U8Z6 EXPRESSION TAG SEQADV 2GOK HIS B 429 UNP Q8U8Z6 EXPRESSION TAG SEQRES 1 A 429 MET SER LEU PRO GLY ASN ASN SER ALA LYS GLY THR ALA SEQRES 2 A 429 THR GLY ASN ALA THR ALA LEU TRP ARG ASN ALA GLN LEU SEQRES 3 A 429 ALA THR LEU ASN PRO ALA MET ASP GLY ILE GLY ALA VAL SEQRES 4 A 429 GLU ASN ALA VAL ILE ALA VAL ARG ASN GLY ARG ILE ALA SEQRES 5 A 429 PHE ALA GLY PRO GLU SER ASP LEU PRO ASP ASP LEU SER SEQRES 6 A 429 THR ALA ASP GLU THR THR ASP CYS GLY GLY ARG TRP ILE SEQRES 7 A 429 THR PRO ALA LEU ILE ASP CYS HIS THR HIS LEU VAL PHE SEQRES 8 A 429 GLY GLY ASN ARG ALA MET GLU PHE GLU MET ARG LEU ASN SEQRES 9 A 429 GLY ALA THR TYR GLU GLU ILE ALA LYS ALA GLY GLY GLY SEQRES 10 A 429 ILE VAL SER SER VAL ARG ASP THR ARG ALA LEU SER ASP SEQRES 11 A 429 GLU VAL LEU VAL ALA GLN ALA LEU PRO ARG LEU ASP THR SEQRES 12 A 429 LEU LEU SER GLU GLY VAL SER THR ILE GLU ILE LYS SER SEQRES 13 A 429 GLY TYR GLY LEU ASP ILE GLU THR GLU LEU LYS MET LEU SEQRES 14 A 429 ARG VAL ALA ARG ARG LEU GLU THR LEU ARG PRO VAL ARG SEQRES 15 A 429 ILE VAL THR SER TYR LEU ALA ALA HIS ALA THR PRO ALA SEQRES 16 A 429 ASP TYR LYS GLY ARG ASN ALA ASP TYR ILE THR ASP VAL SEQRES 17 A 429 VAL LEU PRO GLY LEU GLU LYS ALA HIS ALA GLU GLY LEU SEQRES 18 A 429 ALA ASP ALA VAL ASP GLY PHE CYS GLU GLY ILE ALA PHE SEQRES 19 A 429 SER VAL LYS GLU ILE ASP ARG VAL PHE ALA ALA ALA GLN SEQRES 20 A 429 GLN ARG GLY LEU PRO VAL LYS LEU HIS ALA GLU GLN LEU SEQRES 21 A 429 SER ASN LEU GLY GLY ALA GLU LEU ALA ALA SER TYR ASN SEQRES 22 A 429 ALA LEU SER ALA ASP HIS LEU GLU TYR LEU ASP GLU THR SEQRES 23 A 429 GLY ALA LYS ALA LEU ALA LYS ALA GLY THR VAL ALA VAL SEQRES 24 A 429 LEU LEU PRO GLY ALA PHE TYR ALA LEU ARG GLU LYS GLN SEQRES 25 A 429 LEU PRO PRO VAL GLN ALA LEU ARG ASP ALA GLY ALA GLU SEQRES 26 A 429 ILE ALA LEU ALA THR ASP CYS ASN PRO GLY THR SER PRO SEQRES 27 A 429 LEU THR SER LEU LEU LEU THR MET ASN MET GLY ALA THR SEQRES 28 A 429 LEU PHE ARG MET THR VAL GLU GLU CYS LEU THR ALA THR SEQRES 29 A 429 THR ARG ASN ALA ALA LYS ALA LEU GLY LEU LEU ALA GLU SEQRES 30 A 429 THR GLY THR LEU GLU ALA GLY LYS SER ALA ASP PHE ALA SEQRES 31 A 429 ILE TRP ASP ILE GLU ARG PRO ALA GLU LEU VAL TYR ARG SEQRES 32 A 429 ILE GLY PHE ASN PRO LEU HIS ALA ARG ILE PHE LYS GLY SEQRES 33 A 429 GLN LYS VAL SER PRO GLU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 429 MET SER LEU PRO GLY ASN ASN SER ALA LYS GLY THR ALA SEQRES 2 B 429 THR GLY ASN ALA THR ALA LEU TRP ARG ASN ALA GLN LEU SEQRES 3 B 429 ALA THR LEU ASN PRO ALA MET ASP GLY ILE GLY ALA VAL SEQRES 4 B 429 GLU ASN ALA VAL ILE ALA VAL ARG ASN GLY ARG ILE ALA SEQRES 5 B 429 PHE ALA GLY PRO GLU SER ASP LEU PRO ASP ASP LEU SER SEQRES 6 B 429 THR ALA ASP GLU THR THR ASP CYS GLY GLY ARG TRP ILE SEQRES 7 B 429 THR PRO ALA LEU ILE ASP CYS HIS THR HIS LEU VAL PHE SEQRES 8 B 429 GLY GLY ASN ARG ALA MET GLU PHE GLU MET ARG LEU ASN SEQRES 9 B 429 GLY ALA THR TYR GLU GLU ILE ALA LYS ALA GLY GLY GLY SEQRES 10 B 429 ILE VAL SER SER VAL ARG ASP THR ARG ALA LEU SER ASP SEQRES 11 B 429 GLU VAL LEU VAL ALA GLN ALA LEU PRO ARG LEU ASP THR SEQRES 12 B 429 LEU LEU SER GLU GLY VAL SER THR ILE GLU ILE LYS SER SEQRES 13 B 429 GLY TYR GLY LEU ASP ILE GLU THR GLU LEU LYS MET LEU SEQRES 14 B 429 ARG VAL ALA ARG ARG LEU GLU THR LEU ARG PRO VAL ARG SEQRES 15 B 429 ILE VAL THR SER TYR LEU ALA ALA HIS ALA THR PRO ALA SEQRES 16 B 429 ASP TYR LYS GLY ARG ASN ALA ASP TYR ILE THR ASP VAL SEQRES 17 B 429 VAL LEU PRO GLY LEU GLU LYS ALA HIS ALA GLU GLY LEU SEQRES 18 B 429 ALA ASP ALA VAL ASP GLY PHE CYS GLU GLY ILE ALA PHE SEQRES 19 B 429 SER VAL LYS GLU ILE ASP ARG VAL PHE ALA ALA ALA GLN SEQRES 20 B 429 GLN ARG GLY LEU PRO VAL LYS LEU HIS ALA GLU GLN LEU SEQRES 21 B 429 SER ASN LEU GLY GLY ALA GLU LEU ALA ALA SER TYR ASN SEQRES 22 B 429 ALA LEU SER ALA ASP HIS LEU GLU TYR LEU ASP GLU THR SEQRES 23 B 429 GLY ALA LYS ALA LEU ALA LYS ALA GLY THR VAL ALA VAL SEQRES 24 B 429 LEU LEU PRO GLY ALA PHE TYR ALA LEU ARG GLU LYS GLN SEQRES 25 B 429 LEU PRO PRO VAL GLN ALA LEU ARG ASP ALA GLY ALA GLU SEQRES 26 B 429 ILE ALA LEU ALA THR ASP CYS ASN PRO GLY THR SER PRO SEQRES 27 B 429 LEU THR SER LEU LEU LEU THR MET ASN MET GLY ALA THR SEQRES 28 B 429 LEU PHE ARG MET THR VAL GLU GLU CYS LEU THR ALA THR SEQRES 29 B 429 THR ARG ASN ALA ALA LYS ALA LEU GLY LEU LEU ALA GLU SEQRES 30 B 429 THR GLY THR LEU GLU ALA GLY LYS SER ALA ASP PHE ALA SEQRES 31 B 429 ILE TRP ASP ILE GLU ARG PRO ALA GLU LEU VAL TYR ARG SEQRES 32 B 429 ILE GLY PHE ASN PRO LEU HIS ALA ARG ILE PHE LYS GLY SEQRES 33 B 429 GLN LYS VAL SER PRO GLU GLY HIS HIS HIS HIS HIS HIS HET FE A 500 1 HET MG A 503 1 HET FE B 501 1 HET MG B 502 1 HET CL B 504 1 HET GOL B 505 6 HETNAM FE FE (III) ION HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 FE 2(FE 3+) FORMUL 4 MG 2(MG 2+) FORMUL 7 CL CL 1- FORMUL 8 GOL C3 H8 O3 FORMUL 9 HOH *496(H2 O) HELIX 1 1 PRO A 61 SER A 65 5 5 HELIX 2 2 ARG A 95 ASN A 104 1 10 HELIX 3 3 THR A 107 ALA A 114 1 8 HELIX 4 4 GLY A 117 LEU A 128 1 12 HELIX 5 5 SER A 129 SER A 146 1 18 HELIX 6 6 ASP A 161 GLU A 176 1 16 HELIX 7 7 PRO A 194 LYS A 198 5 5 HELIX 8 8 ARG A 200 VAL A 208 1 9 HELIX 9 9 VAL A 208 GLU A 219 1 12 HELIX 10 10 SER A 235 ARG A 249 1 15 HELIX 11 11 GLY A 264 TYR A 272 1 9 HELIX 12 12 ASP A 284 GLY A 295 1 12 HELIX 13 13 LEU A 301 LEU A 308 1 8 HELIX 14 14 PRO A 315 GLY A 323 1 9 HELIX 15 15 SER A 341 ARG A 354 1 14 HELIX 16 16 THR A 356 THR A 364 1 9 HELIX 17 17 THR A 365 LEU A 372 1 8 HELIX 18 18 ALA A 398 ARG A 403 1 6 HELIX 19 19 SER B 58 LEU B 60 5 3 HELIX 20 20 PRO B 61 SER B 65 5 5 HELIX 21 21 ARG B 95 ASN B 104 1 10 HELIX 22 22 THR B 107 ALA B 114 1 8 HELIX 23 23 GLY B 117 ALA B 127 1 11 HELIX 24 24 SER B 129 SER B 146 1 18 HELIX 25 25 ASP B 161 THR B 177 1 17 HELIX 26 26 PRO B 194 LYS B 198 5 5 HELIX 27 27 ARG B 200 VAL B 208 1 9 HELIX 28 28 VAL B 208 GLU B 219 1 12 HELIX 29 29 SER B 235 ARG B 249 1 15 HELIX 30 30 GLY B 264 TYR B 272 1 9 HELIX 31 31 ASP B 284 GLY B 295 1 12 HELIX 32 32 LEU B 301 LEU B 308 1 8 HELIX 33 33 PRO B 315 GLY B 323 1 9 HELIX 34 34 SER B 341 ARG B 354 1 14 HELIX 35 35 THR B 356 THR B 364 1 9 HELIX 36 36 THR B 365 LEU B 372 1 8 HELIX 37 37 ALA B 398 ARG B 403 1 6 SHEET 1 A 4 ARG A 50 PRO A 56 0 SHEET 2 A 4 ALA A 38 ARG A 47 -1 N ALA A 45 O ALA A 52 SHEET 3 A 4 THR A 18 ALA A 27 -1 N ALA A 24 O ALA A 42 SHEET 4 A 4 GLU A 69 ASP A 72 1 O THR A 71 N ARG A 22 SHEET 1 B 7 ARG A 50 PRO A 56 0 SHEET 2 B 7 ALA A 38 ARG A 47 -1 N ALA A 45 O ALA A 52 SHEET 3 B 7 THR A 18 ALA A 27 -1 N ALA A 24 O ALA A 42 SHEET 4 B 7 TRP A 77 PRO A 80 1 O ILE A 78 N GLN A 25 SHEET 5 B 7 PHE A 389 TRP A 392 -1 O TRP A 392 N TRP A 77 SHEET 6 B 7 LEU A 409 PHE A 414 -1 O HIS A 410 N ILE A 391 SHEET 7 B 7 GLN A 417 LYS A 418 -1 O GLN A 417 N PHE A 414 SHEET 1 C 4 LEU A 82 THR A 87 0 SHEET 2 C 4 VAL A 149 LYS A 155 1 O GLU A 153 N ASP A 84 SHEET 3 C 4 ARG A 182 TYR A 187 1 O ARG A 182 N SER A 150 SHEET 4 C 4 ALA A 224 VAL A 225 1 O ALA A 224 N TYR A 187 SHEET 1 D 5 PHE A 228 CYS A 229 0 SHEET 2 D 5 LYS A 254 ALA A 257 1 O HIS A 256 N CYS A 229 SHEET 3 D 5 SER A 276 HIS A 279 1 O ASP A 278 N LEU A 255 SHEET 4 D 5 VAL A 297 LEU A 300 1 O VAL A 299 N ALA A 277 SHEET 5 D 5 ILE A 326 LEU A 328 1 O ALA A 327 N ALA A 298 SHEET 1 E 4 ARG B 50 PRO B 56 0 SHEET 2 E 4 ALA B 38 ARG B 47 -1 N ALA B 45 O ALA B 52 SHEET 3 E 4 THR B 18 ALA B 27 -1 N ALA B 24 O ALA B 42 SHEET 4 E 4 GLU B 69 ASP B 72 1 O GLU B 69 N LEU B 20 SHEET 1 F 7 ARG B 50 PRO B 56 0 SHEET 2 F 7 ALA B 38 ARG B 47 -1 N ALA B 45 O ALA B 52 SHEET 3 F 7 THR B 18 ALA B 27 -1 N ALA B 24 O ALA B 42 SHEET 4 F 7 TRP B 77 PRO B 80 1 O ILE B 78 N ALA B 27 SHEET 5 F 7 PHE B 389 TRP B 392 -1 O TRP B 392 N TRP B 77 SHEET 6 F 7 LEU B 409 PHE B 414 -1 O HIS B 410 N ILE B 391 SHEET 7 F 7 GLN B 417 LYS B 418 -1 O GLN B 417 N PHE B 414 SHEET 1 G 4 LEU B 82 ASP B 84 0 SHEET 2 G 4 VAL B 149 LYS B 155 1 O GLU B 153 N ASP B 84 SHEET 3 G 4 ARG B 182 TYR B 187 1 O ARG B 182 N SER B 150 SHEET 4 G 4 ALA B 224 VAL B 225 1 O ALA B 224 N TYR B 187 SHEET 1 H 5 PHE B 228 CYS B 229 0 SHEET 2 H 5 LYS B 254 ALA B 257 1 O HIS B 256 N CYS B 229 SHEET 3 H 5 SER B 276 HIS B 279 1 O ASP B 278 N LEU B 255 SHEET 4 H 5 VAL B 297 LEU B 300 1 O VAL B 299 N HIS B 279 SHEET 5 H 5 ILE B 326 LEU B 328 1 O ALA B 327 N LEU B 300 LINK NE2 HIS A 86 FE FE A 500 1555 1555 2.04 LINK NE2 HIS A 88 FE FE A 500 1555 1555 2.18 LINK OD2 ASP A 203 MG MG B 502 4546 1555 2.07 LINK NE2 HIS A 256 FE FE A 500 1555 1555 2.42 LINK OD1 ASN A 273 MG MG A 503 1555 1555 1.83 LINK OD1 ASN A 273 MG MG A 503 2656 1555 1.85 LINK OD1 ASP A 331 FE FE A 500 1555 1555 2.35 LINK FE FE A 500 O HOH A 610 1555 1555 2.05 LINK MG MG A 503 O HOH A 571 1555 1555 2.21 LINK MG MG A 503 O HOH A 571 1555 2656 2.21 LINK MG MG A 503 O HOH A 626 1555 1555 2.07 LINK MG MG A 503 O HOH A 626 1555 2656 2.07 LINK NE2 HIS B 86 FE FE B 501 1555 1555 2.10 LINK NE2 HIS B 88 FE FE B 501 1555 1555 2.10 LINK NE2 HIS B 256 FE FE B 501 1555 1555 2.39 LINK OD1 ASP B 331 FE FE B 501 1555 1555 2.33 LINK OD2 ASP B 393 MG MG B 502 1555 1555 2.20 LINK FE FE B 501 O HOH B 581 1555 1555 2.09 LINK MG MG B 502 O HOH B 522 1555 1555 2.16 LINK MG MG B 502 O HOH B 541 1555 1555 2.06 LINK MG MG B 502 O HOH B 544 1555 1555 2.22 LINK MG MG B 502 O HOH B 685 1555 1555 2.07 SITE 1 AC1 5 HIS A 86 HIS A 88 HIS A 256 ASP A 331 SITE 2 AC1 5 HOH A 610 SITE 1 AC2 5 HIS B 86 HIS B 88 HIS B 256 ASP B 331 SITE 2 AC2 5 HOH B 581 SITE 1 AC3 6 ASP A 203 ASP B 393 HOH B 522 HOH B 541 SITE 2 AC3 6 HOH B 544 HOH B 685 SITE 1 AC4 3 ASN A 273 HOH A 571 HOH A 626 SITE 1 AC5 3 ARG A 200 ASP A 203 HOH B 685 SITE 1 AC6 9 ASN A 94 PRO A 334 PRO A 338 THR A 340 SITE 2 AC6 9 TYR B 402 ARG B 403 HOH B 514 HOH B 516 SITE 3 AC6 9 HOH B 518 CRYST1 140.754 63.630 103.716 90.00 111.93 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007105 0.000000 0.002860 0.00000 SCALE2 0.000000 0.015716 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010394 0.00000