HEADER METAL BINDING PROTEIN 16-APR-06 2GP3 TITLE CRYSTAL STRUCTURE OF THE CATALYTIC CORE DOMAIN OF JMJD2A COMPND MOL_ID: 1; COMPND 2 MOLECULE: JUMONJI DOMAIN-CONTAINING PROTEIN 2A; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: JMJD2A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX 4T2 KEYWDS BETA BARREL, ZINC FINGER, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Z.CHEN,J.ZANG,J.WHETSTINE,X.HONG,F.DAVRAZOU,T.G.KUTATELADZE, AUTHOR 2 M.SIMPSON,S.DAI,J.HAGMAN,Y.SHI,G.ZHANG REVDAT 5 14-FEB-24 2GP3 1 REMARK LINK REVDAT 4 27-NOV-13 2GP3 1 HET HETATM HETNAM REMARK REVDAT 4 2 1 VERSN REVDAT 3 13-OCT-09 2GP3 1 TITLE REVDAT 2 20-MAY-08 2GP3 1 JRNL VERSN REVDAT 1 23-MAY-06 2GP3 0 JRNL AUTH Z.CHEN,J.ZANG,J.WHETSTINE,X.HONG,F.DAVRAZOU,T.G.KUTATELADZE, JRNL AUTH 2 M.SIMPSON,Q.MAO,C.H.PAN,S.DAI,J.HAGMAN,K.HANSEN,Y.SHI, JRNL AUTH 3 G.ZHANG JRNL TITL STRUCTURAL INSIGHTS INTO HISTONE DEMETHYLATION BY JMJD2 JRNL TITL 2 FAMILY MEMBERS JRNL REF CELL(CAMBRIDGE,MASS.) V. 125 691 2006 JRNL REFN ISSN 0092-8674 JRNL PMID 16677698 JRNL DOI 10.1016/J.CELL.2006.04.024 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 33706 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1360 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.38 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3401 REMARK 3 BIN FREE R VALUE : 0.3422 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 38 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5653 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 103 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.390 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GP3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037385. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 0.9793, 0.9600 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33706 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 50.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG8000, 200 MM MGCL2, 100 MM REMARK 280 TRIS, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 50.43350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 74.77000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 50.43350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 74.77000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 GLU B 4 REMARK 465 SER B 5 REMARK 465 GLU B 6 REMARK 465 THR B 7 REMARK 465 LEU B 8 REMARK 465 ASN B 9 REMARK 465 GLU B 349 REMARK 465 ALA B 350 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN A 9 N SER A 11 2.07 REMARK 500 O SER A 3 N SER A 5 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG1 THR A 76 O THR B 126 4545 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 10 C - N - CA ANGL. DEV. = 9.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 4 27.72 -32.73 REMARK 500 GLU A 6 34.15 -54.05 REMARK 500 ASN A 9 136.55 -36.78 REMARK 500 PRO A 10 43.32 -27.11 REMARK 500 ALA A 12 56.47 23.12 REMARK 500 LYS A 51 -50.10 -28.05 REMARK 500 GLU A 52 31.72 -75.71 REMARK 500 ILE A 62 -22.81 -165.86 REMARK 500 ASP A 63 -5.38 -56.58 REMARK 500 SER A 79 71.82 34.92 REMARK 500 LYS A 89 -135.97 -74.74 REMARK 500 ALA A 91 131.92 -15.51 REMARK 500 ASP A 104 -7.65 -48.21 REMARK 500 SER A 112 -77.51 -80.23 REMARK 500 PRO A 129 104.81 -42.56 REMARK 500 LYS A 182 -2.91 74.67 REMARK 500 MET A 192 16.98 55.33 REMARK 500 ALA A 236 53.03 -143.61 REMARK 500 ASP A 337 103.50 -31.13 REMARK 500 ASN A 338 44.27 -104.60 REMARK 500 THR A 347 -66.35 -24.93 REMARK 500 LYS B 51 -48.25 -29.66 REMARK 500 GLU B 52 33.07 -77.22 REMARK 500 ILE B 62 -23.09 -169.16 REMARK 500 ASP B 63 -1.51 -56.40 REMARK 500 SER B 79 69.30 35.21 REMARK 500 LYS B 89 -135.97 -77.04 REMARK 500 ALA B 91 133.39 -17.39 REMARK 500 ASP B 104 -6.03 -47.90 REMARK 500 SER B 112 -76.57 -79.64 REMARK 500 PRO B 129 109.06 -42.29 REMARK 500 VAL B 171 -60.09 -99.57 REMARK 500 LYS B 182 -2.28 74.52 REMARK 500 MET B 192 19.30 55.64 REMARK 500 ALA B 236 56.00 -144.05 REMARK 500 THR B 344 -19.95 102.95 REMARK 500 LEU B 345 -84.10 -3.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 402 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 188 NE2 REMARK 620 2 GLU A 190 OE1 112.2 REMARK 620 3 HIS A 276 NE2 97.7 79.5 REMARK 620 4 HOH A 521 O 96.2 151.3 102.3 REMARK 620 5 HOH A 529 O 111.3 88.1 150.9 76.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 234 SG REMARK 620 2 HIS A 240 NE2 106.0 REMARK 620 3 CYS A 306 SG 115.5 115.9 REMARK 620 4 CYS A 308 SG 113.5 90.8 112.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 B 402 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 188 NE2 REMARK 620 2 GLU B 190 OE1 110.2 REMARK 620 3 HIS B 276 NE2 93.8 77.4 REMARK 620 4 HOH B 532 O 107.9 141.8 96.9 REMARK 620 5 HOH B 535 O 100.2 93.4 165.2 83.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 234 SG REMARK 620 2 HIS B 240 NE2 107.2 REMARK 620 3 CYS B 306 SG 126.0 112.4 REMARK 620 4 CYS B 308 SG 110.4 83.7 109.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 B 402 DBREF 2GP3 A 2 350 UNP O75164 JHD3A_HUMAN 2 350 DBREF 2GP3 B 2 350 UNP O75164 JHD3A_HUMAN 2 350 SEQRES 1 A 349 ALA SER GLU SER GLU THR LEU ASN PRO SER ALA ARG ILE SEQRES 2 A 349 MET THR PHE TYR PRO THR MET GLU GLU PHE ARG ASN PHE SEQRES 3 A 349 SER ARG TYR ILE ALA TYR ILE GLU SER GLN GLY ALA HIS SEQRES 4 A 349 ARG ALA GLY LEU ALA LYS VAL VAL PRO PRO LYS GLU TRP SEQRES 5 A 349 LYS PRO ARG ALA SER TYR ASP ASP ILE ASP ASP LEU VAL SEQRES 6 A 349 ILE PRO ALA PRO ILE GLN GLN LEU VAL THR GLY GLN SER SEQRES 7 A 349 GLY LEU PHE THR GLN TYR ASN ILE GLN LYS LYS ALA MET SEQRES 8 A 349 THR VAL ARG GLU PHE ARG LYS ILE ALA ASN SER ASP LYS SEQRES 9 A 349 TYR CYS THR PRO ARG TYR SER GLU PHE GLU GLU LEU GLU SEQRES 10 A 349 ARG LYS TYR TRP LYS ASN LEU THR PHE ASN PRO PRO ILE SEQRES 11 A 349 TYR GLY ALA ASP VAL ASN GLY THR LEU TYR GLU LYS HIS SEQRES 12 A 349 VAL ASP GLU TRP ASN ILE GLY ARG LEU ARG THR ILE LEU SEQRES 13 A 349 ASP LEU VAL GLU LYS GLU SER GLY ILE THR ILE GLU GLY SEQRES 14 A 349 VAL ASN THR PRO TYR LEU TYR PHE GLY MET TRP LYS THR SEQRES 15 A 349 SER PHE ALA TRP HIS THR GLU ASP MET ASP LEU TYR SER SEQRES 16 A 349 ILE ASN TYR LEU HIS PHE GLY GLU PRO LYS SER TRP TYR SEQRES 17 A 349 SER VAL PRO PRO GLU HIS GLY LYS ARG LEU GLU ARG LEU SEQRES 18 A 349 ALA LYS GLY PHE PHE PRO GLY SER ALA GLN SER CYS GLU SEQRES 19 A 349 ALA PHE LEU ARG HIS LYS MET THR LEU ILE SER PRO LEU SEQRES 20 A 349 MET LEU LYS LYS TYR GLY ILE PRO PHE ASP LYS VAL THR SEQRES 21 A 349 GLN GLU ALA GLY GLU PHE MET ILE THR PHE PRO TYR GLY SEQRES 22 A 349 TYR HIS ALA GLY PHE ASN HIS GLY PHE ASN CYS ALA GLU SEQRES 23 A 349 SER THR ASN PHE ALA THR ARG ARG TRP ILE GLU TYR GLY SEQRES 24 A 349 LYS GLN ALA VAL LEU CYS SER CYS ARG LYS ASP MET VAL SEQRES 25 A 349 LYS ILE SER MET ASP VAL PHE VAL ARG LYS PHE GLN PRO SEQRES 26 A 349 GLU ARG TYR LYS LEU TRP LYS ALA GLY LYS ASP ASN THR SEQRES 27 A 349 VAL ILE ASP HIS THR LEU PRO THR PRO GLU ALA SEQRES 1 B 349 ALA SER GLU SER GLU THR LEU ASN PRO SER ALA ARG ILE SEQRES 2 B 349 MET THR PHE TYR PRO THR MET GLU GLU PHE ARG ASN PHE SEQRES 3 B 349 SER ARG TYR ILE ALA TYR ILE GLU SER GLN GLY ALA HIS SEQRES 4 B 349 ARG ALA GLY LEU ALA LYS VAL VAL PRO PRO LYS GLU TRP SEQRES 5 B 349 LYS PRO ARG ALA SER TYR ASP ASP ILE ASP ASP LEU VAL SEQRES 6 B 349 ILE PRO ALA PRO ILE GLN GLN LEU VAL THR GLY GLN SER SEQRES 7 B 349 GLY LEU PHE THR GLN TYR ASN ILE GLN LYS LYS ALA MET SEQRES 8 B 349 THR VAL ARG GLU PHE ARG LYS ILE ALA ASN SER ASP LYS SEQRES 9 B 349 TYR CYS THR PRO ARG TYR SER GLU PHE GLU GLU LEU GLU SEQRES 10 B 349 ARG LYS TYR TRP LYS ASN LEU THR PHE ASN PRO PRO ILE SEQRES 11 B 349 TYR GLY ALA ASP VAL ASN GLY THR LEU TYR GLU LYS HIS SEQRES 12 B 349 VAL ASP GLU TRP ASN ILE GLY ARG LEU ARG THR ILE LEU SEQRES 13 B 349 ASP LEU VAL GLU LYS GLU SER GLY ILE THR ILE GLU GLY SEQRES 14 B 349 VAL ASN THR PRO TYR LEU TYR PHE GLY MET TRP LYS THR SEQRES 15 B 349 SER PHE ALA TRP HIS THR GLU ASP MET ASP LEU TYR SER SEQRES 16 B 349 ILE ASN TYR LEU HIS PHE GLY GLU PRO LYS SER TRP TYR SEQRES 17 B 349 SER VAL PRO PRO GLU HIS GLY LYS ARG LEU GLU ARG LEU SEQRES 18 B 349 ALA LYS GLY PHE PHE PRO GLY SER ALA GLN SER CYS GLU SEQRES 19 B 349 ALA PHE LEU ARG HIS LYS MET THR LEU ILE SER PRO LEU SEQRES 20 B 349 MET LEU LYS LYS TYR GLY ILE PRO PHE ASP LYS VAL THR SEQRES 21 B 349 GLN GLU ALA GLY GLU PHE MET ILE THR PHE PRO TYR GLY SEQRES 22 B 349 TYR HIS ALA GLY PHE ASN HIS GLY PHE ASN CYS ALA GLU SEQRES 23 B 349 SER THR ASN PHE ALA THR ARG ARG TRP ILE GLU TYR GLY SEQRES 24 B 349 LYS GLN ALA VAL LEU CYS SER CYS ARG LYS ASP MET VAL SEQRES 25 B 349 LYS ILE SER MET ASP VAL PHE VAL ARG LYS PHE GLN PRO SEQRES 26 B 349 GLU ARG TYR LYS LEU TRP LYS ALA GLY LYS ASP ASN THR SEQRES 27 B 349 VAL ILE ASP HIS THR LEU PRO THR PRO GLU ALA HET ZN A 401 1 HET FE2 A 402 1 HET ZN B 401 1 HET FE2 B 402 1 HETNAM ZN ZINC ION HETNAM FE2 FE (II) ION FORMUL 3 ZN 2(ZN 2+) FORMUL 4 FE2 2(FE 2+) FORMUL 7 HOH *103(H2 O) HELIX 1 1 SER A 5 ASN A 9 5 5 HELIX 2 2 THR A 20 ASN A 26 1 7 HELIX 3 3 ASN A 26 GLN A 37 1 12 HELIX 4 4 GLY A 38 ALA A 42 5 5 HELIX 5 5 VAL A 94 SER A 103 1 10 HELIX 6 6 GLU A 113 LEU A 125 1 13 HELIX 7 7 LEU A 157 GLY A 165 1 9 HELIX 8 8 GLU A 190 LEU A 194 5 5 HELIX 9 9 PRO A 212 GLU A 214 5 3 HELIX 10 10 HIS A 215 PHE A 227 1 13 HELIX 11 11 PHE A 227 CYS A 234 1 8 HELIX 12 12 ALA A 236 LYS A 241 5 6 HELIX 13 13 SER A 246 TYR A 253 1 8 HELIX 14 14 ARG A 295 ALA A 303 1 9 HELIX 15 15 MET A 317 GLN A 325 1 9 HELIX 16 16 ARG A 328 ALA A 334 1 7 HELIX 17 17 THR B 20 ASN B 26 1 7 HELIX 18 18 ASN B 26 GLN B 37 1 12 HELIX 19 19 GLY B 38 ALA B 42 5 5 HELIX 20 20 VAL B 94 SER B 103 1 10 HELIX 21 21 GLU B 113 LEU B 125 1 13 HELIX 22 22 LEU B 157 GLY B 165 1 9 HELIX 23 23 GLU B 190 LEU B 194 5 5 HELIX 24 24 PRO B 212 GLU B 214 5 3 HELIX 25 25 HIS B 215 PHE B 227 1 13 HELIX 26 26 PHE B 227 CYS B 234 1 8 HELIX 27 27 ALA B 236 LYS B 241 5 6 HELIX 28 28 SER B 246 TYR B 253 1 8 HELIX 29 29 ARG B 295 ALA B 303 1 9 HELIX 30 30 MET B 317 GLN B 325 1 9 HELIX 31 31 ARG B 328 ALA B 334 1 7 SHEET 1 A10 MET A 15 PHE A 17 0 SHEET 2 A10 LEU A 44 VAL A 47 1 O LYS A 46 N MET A 15 SHEET 3 A10 PHE A 267 THR A 270 -1 O PHE A 267 N VAL A 47 SHEET 4 A10 TYR A 195 GLY A 203 -1 N ASN A 198 O MET A 268 SHEET 5 A10 ASN A 284 PHE A 291 -1 O GLU A 287 N TYR A 199 SHEET 6 A10 TYR A 175 PHE A 178 -1 N TYR A 177 O ALA A 286 SHEET 7 A10 ILE A 131 ASN A 137 -1 N GLY A 133 O PHE A 178 SHEET 8 A10 ILE A 71 GLN A 78 -1 N ILE A 71 O TYR A 132 SHEET 9 A10 LEU A 81 GLN A 88 -1 O TYR A 85 N LEU A 74 SHEET 10 A10 THR A 243 ILE A 245 -1 O LEU A 244 N PHE A 82 SHEET 1 B 2 VAL A 66 ILE A 67 0 SHEET 2 B 2 MET A 92 THR A 93 -1 O MET A 92 N ILE A 67 SHEET 1 C 4 SER A 184 HIS A 188 0 SHEET 2 C 4 TYR A 275 ASN A 280 -1 O GLY A 278 N PHE A 185 SHEET 3 C 4 LYS A 206 VAL A 211 -1 N TYR A 209 O ALA A 277 SHEET 4 C 4 ASP A 258 GLN A 262 -1 O VAL A 260 N TRP A 208 SHEET 1 D10 MET B 15 PHE B 17 0 SHEET 2 D10 LEU B 44 VAL B 47 1 O LYS B 46 N MET B 15 SHEET 3 D10 PHE B 267 THR B 270 -1 O ILE B 269 N ALA B 45 SHEET 4 D10 TYR B 195 GLY B 203 -1 N SER B 196 O THR B 270 SHEET 5 D10 ASN B 284 PHE B 291 -1 O GLU B 287 N TYR B 199 SHEET 6 D10 TYR B 175 PHE B 178 -1 N TYR B 177 O ALA B 286 SHEET 7 D10 ILE B 131 ASN B 137 -1 N GLY B 133 O PHE B 178 SHEET 8 D10 ILE B 71 GLN B 78 -1 N ILE B 71 O TYR B 132 SHEET 9 D10 LEU B 81 GLN B 88 -1 O TYR B 85 N LEU B 74 SHEET 10 D10 THR B 243 ILE B 245 -1 O LEU B 244 N PHE B 82 SHEET 1 E 2 VAL B 66 ILE B 67 0 SHEET 2 E 2 MET B 92 THR B 93 -1 O MET B 92 N ILE B 67 SHEET 1 F 4 SER B 184 HIS B 188 0 SHEET 2 F 4 TYR B 275 ASN B 280 -1 O GLY B 278 N PHE B 185 SHEET 3 F 4 LYS B 206 VAL B 211 -1 N TYR B 209 O ALA B 277 SHEET 4 F 4 ASP B 258 GLN B 262 -1 O VAL B 260 N TRP B 208 LINK NE2 HIS A 188 FE FE2 A 402 1555 1555 2.24 LINK OE1 GLU A 190 FE FE2 A 402 1555 1555 2.09 LINK SG CYS A 234 ZN ZN A 401 1555 1555 2.34 LINK NE2 HIS A 240 ZN ZN A 401 1555 1555 2.09 LINK NE2 HIS A 276 FE FE2 A 402 1555 1555 2.15 LINK SG CYS A 306 ZN ZN A 401 1555 1555 2.18 LINK SG CYS A 308 ZN ZN A 401 1555 1555 2.38 LINK FE FE2 A 402 O HOH A 521 1555 1555 2.49 LINK FE FE2 A 402 O HOH A 529 1555 1555 2.67 LINK NE2 HIS B 188 FE FE2 B 402 1555 1555 2.20 LINK OE1 GLU B 190 FE FE2 B 402 1555 1555 2.13 LINK SG CYS B 234 ZN ZN B 401 1555 1555 2.22 LINK NE2 HIS B 240 ZN ZN B 401 1555 1555 2.22 LINK NE2 HIS B 276 FE FE2 B 402 1555 1555 2.26 LINK SG CYS B 306 ZN ZN B 401 1555 1555 2.26 LINK SG CYS B 308 ZN ZN B 401 1555 1555 2.43 LINK FE FE2 B 402 O HOH B 532 1555 1555 2.34 LINK FE FE2 B 402 O HOH B 535 1555 1555 2.47 SITE 1 AC1 4 CYS A 234 HIS A 240 CYS A 306 CYS A 308 SITE 1 AC2 5 HIS A 188 GLU A 190 HIS A 276 HOH A 521 SITE 2 AC2 5 HOH A 529 SITE 1 AC3 4 CYS B 234 HIS B 240 CYS B 306 CYS B 308 SITE 1 AC4 5 HIS B 188 GLU B 190 HIS B 276 HOH B 532 SITE 2 AC4 5 HOH B 535 CRYST1 100.867 149.540 56.815 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009914 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006687 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017601 0.00000